View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3711_high_18 (Length: 275)

Name: NF3711_high_18
Description: NF3711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3711_high_18
NF3711_high_18
[»] chr3 (1 HSPs)
chr3 (18-266)||(35537683-35537931)
[»] chr7 (3 HSPs)
chr7 (62-245)||(28172907-28173093)
chr7 (30-129)||(23054014-23054113)
chr7 (223-259)||(23053882-23053918)
[»] chr6 (3 HSPs)
chr6 (30-123)||(15967948-15968041)
chr6 (18-130)||(26180415-26180527)
chr6 (211-255)||(26206515-26206559)
[»] scaffold0026 (1 HSPs)
scaffold0026 (53-130)||(68101-68178)
[»] chr4 (1 HSPs)
chr4 (211-255)||(20676217-20676261)
[»] chr8 (1 HSPs)
chr8 (53-108)||(24794741-24794796)


Alignment Details
Target: chr3 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 18 - 266
Target Start/End: Original strand, 35537683 - 35537931
Alignment:
Q  18 caatatagagatccaaatacaaaattggcacctgtcccactttacaattcagaattgatgaagcctcaaccaaccaggactcagaaatattgaccccaac 117  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||    
T  35537683 caatagagagatccaaatacaaaattggcacctgtcccactttacaattcaaaattgatgatgcctcaaccaaccaggactcagaaatattgaccccaac 35537782  T
Q  118 cagcatacttttaaagtttaccttcagcccagacatccccccaaacagtaacaacaccacccgcatagcacgaatatcggcctaactcttgacacctaac 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35537783 cagcatacttttaaagtttaccttcagcccagacatccccccaaacagtaacaacaccacccgcatagcacgaatatcggcctaactcttgacacctaac 35537882  T
Q  218 aaaaaagtgtcatcagcaaattgaaggtgtgaaacaaccatagtattat 266  Q
    || |||||||| |||||||||||||||||||||||||||||||||||||    
T  35537883 aacaaagtgtcgtcagcaaattgaaggtgtgaaacaaccatagtattat 35537931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 61; Significance: 3e-26; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 62 - 245
Target Start/End: Complemental strand, 28173093 - 28172907
Alignment:
Q  62 caattcagaattgatgaagcctcaaccaaccaggactcagaaatattgaccccaaccagcatactttta---aagtttaccttcagcccagacatccccc 158  Q
    |||||||||||||| |  ||||| |||| ||| |||||||||||||  |||||||||||||||||||||   || || || ||||  ||||||||| ||     
T  28173093 caattcagaattgaggttgcctctaccagccaagactcagaaatatccaccccaaccagcatacttttatgaaaattgactttcaaaccagacatcacct 28172994  T
Q  159 caaacagtaacaacaccacccgcatagcacgaatatcggcctaactcttgacacctaacaaaaaagtgtcatcagcaaattgaaggt 245  Q
    |||||| ||| |||||| ||||||| || |||| || |||||||||||||||||| | ||| |||| ||||||| |||| |||||||    
T  28172993 caaacaataataacaccgcccgcatggctcgaacattggcctaactcttgacacccagcaacaaagcgtcatcaacaaactgaaggt 28172907  T

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Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 30 - 129
Target Start/End: Complemental strand, 23054113 - 23054014
Alignment:
Q  30 ccaaatacaaaattggcacctgtcccactttacaattcagaattgatgaagcctcaaccaaccaggactcagaaatattgaccccaaccagcatactttt 129  Q
    ||||||||||||  ||||| | ||||||||||||||||| ||| ||||  || |||||||| || || ||||||||||| |||| |||||||| ||||||    
T  23054113 ccaaatacaaaaacggcacatatcccactttacaattcaaaatggatgctgcttcaaccaaacaagagtcagaaatattaaccctaaccagcaaactttt 23054014  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 223 - 259
Target Start/End: Complemental strand, 23053918 - 23053882
Alignment:
Q  223 agtgtcatcagcaaattgaaggtgtgaaacaaccata 259  Q
    ||||||||||||||||||||| || ||||||||||||    
T  23053918 agtgtcatcagcaaattgaagatgggaaacaaccata 23053882  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 30 - 123
Target Start/End: Complemental strand, 15968041 - 15967948
Alignment:
Q  30 ccaaatacaaaattggcacctgtcccactttacaattcagaattgatgaagcctcaaccaaccaggactcagaaatattgaccccaaccagcat 123  Q
    ||||||||||||  ||||| ||||||||||||||||||| ||| ||||  ||  |||| ||||| |  ||||||||||| ||||||||||||||    
T  15968041 ccaaatacaaaaacggcacatgtcccactttacaattcaaaatggatgctgctccaacaaaccatgggtcagaaatattaaccccaaccagcat 15967948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 18 - 130
Target Start/End: Original strand, 26180415 - 26180527
Alignment:
Q  18 caatatagagatccaaatacaaaattggcacctgtcccactttacaattcagaattgatgaagcctcaaccaaccaggactcagaaatattgaccccaac 117  Q
    ||||| ||||| |||| | ||| | ||||||||  ||||||||||| |||| |||   ||  ||||||||||||||||| ||||| ||||| || |||||    
T  26180415 caatagagagacccaagttcaagaatggcaccttccccactttacagttcaaaatatttgttgcctcaaccaaccaggagtcagagatatttacaccaac 26180514  T
Q  118 cagcatactttta 130  Q
    |||||||||||||    
T  26180515 cagcatactttta 26180527  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 211 - 255
Target Start/End: Original strand, 26206515 - 26206559
Alignment:
Q  211 acctaacaaaaaagtgtcatcagcaaattgaaggtgtgaaacaac 255  Q
    ||||||||| |||||||||||||||||||| ||||| || |||||    
T  26206515 acctaacaacaaagtgtcatcagcaaattggaggtgagatacaac 26206559  T

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Target: scaffold0026 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 53 - 130
Target Start/End: Original strand, 68101 - 68178
Alignment:
Q  53 cccactttacaattcagaattgatgaagcctcaaccaaccaggactcagaaatattgaccccaaccagcatactttta 130  Q
    ||||| |||||||||||||| ||||   ||||  ||||||| ||||| || ||||| |||||||||||||||||||||    
T  68101 cccaccttacaattcagaatagatgctacctccgccaaccaagactcggagatattaaccccaaccagcatactttta 68178  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 211 - 255
Target Start/End: Original strand, 20676217 - 20676261
Alignment:
Q  211 acctaacaaaaaagtgtcatcagcaaattgaaggtgtgaaacaac 255  Q
    ||||||||| |||||||||||||||||||| ||||| ||||||||    
T  20676217 acctaacaataaagtgtcatcagcaaattggaggtgagaaacaac 20676261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 53 - 108
Target Start/End: Original strand, 24794741 - 24794796
Alignment:
Q  53 cccactttacaattcagaattgatgaagcctcaaccaaccaggactcagaaatatt 108  Q
    ||||||||||||||||  ||||| |  |||||||||||||| ||||||||||||||    
T  24794741 cccactttacaattcaacattgaagccgcctcaaccaaccaagactcagaaatatt 24794796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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