View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3711_high_2 (Length: 682)
Name: NF3711_high_2
Description: NF3711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3711_high_2 |
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Alignment Details
Target: chr7 (Bit Score: 586; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 586; E-Value: 0
Query Start/End: Original strand, 10 - 667
Target Start/End: Original strand, 363101 - 363758
Alignment:
| Q |
10 |
catcatcaatatttggagacatggaggaagatgatccggaataattccgtcggtaatgatggggatcatgatcatgagacttaggcattggattctcctg |
109 |
Q |
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| T |
363101 |
catcagcaatatttggagacatggaggaagatgatccggaataattccgacggtaacgatggggatcatgatcatgagacttaggcattgaattctcctg |
363200 |
T |
|
| Q |
110 |
tacttttacctggtcgagacttagaaattttaacttgatttgttctggcgagccatacaacccaggtaagtggttcatattatcagctaacattgtatct |
209 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
363201 |
tacttttacctggtcgagacttagaaattttaacttgatttattctggcgagccatacaacccaggtaagtggttcatattatcagctaacattgtatct |
363300 |
T |
|
| Q |
210 |
aacaccttgtcgtatacgttcttataagaaaactcgttgttttcaacagacttgatgcagtaaatcaacgtttcagtgaaataacaaccactgaccgaat |
309 |
Q |
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| T |
363301 |
aacaccttgtcgtatacattcttataagaaaactcgttgttttcaaaagacttgatgcagtaaatcaacgtttcagtgaaataacaacctctgaccgaat |
363400 |
T |
|
| Q |
310 |
aactcttgtaacgaatgcgaccttttcctgtaatctgtcccgtttggcatgcggacatgtaaactcctaatccccgctttgtcgaagcatttggtgccat |
409 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
363401 |
gactcttgtaacgaatgcgaccttttcatgtaatctgtcccgtttggcatgcggacatgtaaactcctaatccccgctttgtcgaagcatttggtgtcat |
363500 |
T |
|
| Q |
410 |
tcctttgtcagtcacagggagaaggttactgacaccaccttcctctcgggctccaccaaggagccctcctgaattacagcaatcaccaataaacaaaaaa |
509 |
Q |
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| T |
363501 |
tcctttgtcagtgacagggagaaggttactgacaccaccttcctctcgggctccaccaaggagccctcctgaatgacagcaatcaccaataaacaaaaaa |
363600 |
T |
|
| Q |
510 |
gaaatttcatctaaaagatccccaaagatctcattgatgtcgtgctctgtaaaacaaaacaaaaagacagacacgcatgtcagttccttttcttacttcc |
609 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||| |
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| T |
363601 |
caaatttcatctaaaagatccccaaagatctcattgatgtcgtgctctgtaaaacaaaacaaaaagacagacacgcatgttagttccttttcttatttcc |
363700 |
T |
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| Q |
610 |
ctaatatatcatttattttcttttaatgttgttaattaagctttaaccacgtagaatc |
667 |
Q |
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| T |
363701 |
ctaatatatcatttattttcttttaatgttgttaattgagctttaactacgtagaatc |
363758 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 156; Significance: 2e-82; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 156; E-Value: 2e-82
Query Start/End: Original strand, 57 - 509
Target Start/End: Complemental strand, 41024094 - 41023636
Alignment:
| Q |
57 |
cgtcggtaatgatggggatcatgatcatgagacttaggcattggattctcctgtacttttacctggtcgagacttagaaattttaacttgatttgttctg |
156 |
Q |
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||||||||| || ||||| ||||||||||||||| || |||||||||||||| ||||||||| ||||||||||||| |||||||||||||||||||| || |
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| T |
41024094 |
cgtcggtaacgaaggggaacatgatcatgagactcagacattggattctcctctacttttacatggtcgagacttataaattttaacttgatttgttatg |
41023995 |
T |
|
| Q |
157 |
gcgagccatacaacccaggtaagtggttcatattatcagctaacattgtatctaacaccttgtcgtatacgttcttataagaaaactcgttgttttcaac |
256 |
Q |
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||||||||||||||||| |||||| |||||| ||||||||||||||| | || | || ||||||||| |||||||| ||||| |||||||| | || |
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| T |
41023994 |
gcgagccatacaacccaagtaagttgttcatcttatcagctaacattttttcacatactgagtcgtatacattcttatacgaaaaatcgttgttcttaaa |
41023895 |
T |
|
| Q |
257 |
agacttgatgcagtaaatcaacgtttcagtgaaataacaaccactgaccgaataa------ctcttgtaacgaatgcgaccttttcctgtaatctgtccc |
350 |
Q |
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|||||||||| ||||||||||||||||||| |||| |||| | ||| || || ||| |||| |||| || |||| || |||||| || |
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| T |
41023894 |
agacttgatgatgtaaatcaacgtttcagtgcaatatgcaccagttacccaagaatccgtcttctcgtaataaatgtgatatttttctataatctatcaa |
41023795 |
T |
|
| Q |
351 |
gtttggcatgcggacatgtaaactcctaatccccgctttgtcgaagcatttggtgccattcctttgtcagtcacagggagaaggttactgacaccacctt |
450 |
Q |
| |
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|||| ||| ||||||| |||||| | || || || |||| ||||||| ||||||| |||| ||||||||| | ||||||||||||||||||||||||| |
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| T |
41023794 |
gtttagcaagcggacaagtaaacacatattctccactttttcgaagcttttggtgtcatttgtttgtcagtgatagggagaaggttactgacaccacctg |
41023695 |
T |
|
| Q |
451 |
cctctcgggctccaccaaggagccctcctgaattacagcaatcaccaataaacaaaaaa |
509 |
Q |
| |
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||||| |||||||| |||| |||||||||||||| || |||||||||||||||||||| |
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|
| T |
41023694 |
cctcttaggctccacaaaggtgccctcctgaattatagaaatcaccaataaacaaaaaa |
41023636 |
T |
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