View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3711_high_22 (Length: 222)
Name: NF3711_high_22
Description: NF3711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3711_high_22 |
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Alignment Details
Target: chr5 (Bit Score: 175; Significance: 2e-94; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 9 - 207
Target Start/End: Complemental strand, 41095313 - 41095115
Alignment:
| Q |
9 |
acatcatcagtattgaacagatcatgcataatacaacaccaataaaagtgcagtacagaaatcaataaatggaaattgaaatagagagatgcaacaagta |
108 |
Q |
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| T |
41095313 |
acatcattagtagtgaacagatcatgcataatacaacaccaataaaagtgcagtacggaaatcaataaatggaaattgaaatagagagatgcaacaatta |
41095214 |
T |
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| Q |
109 |
attgatttggattaatttcgtatgtagcagcgacatcaaataacaaggactgaattcaaatagataaggcaacaataataagaagtaacacacatgaat |
207 |
Q |
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| T |
41095213 |
attgattcggattaatttcgtatgtagcagcgacatcaaataacaaggactgaattcaaatagataaggcaacaataataagaagtaacactcatgaat |
41095115 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 9 - 207
Target Start/End: Original strand, 14048536 - 14048734
Alignment:
| Q |
9 |
acatcatcagtattgaacagatcatgcataatacaacaccaataaaagtgcagtacagaaatcaataaatggaaattgaaatagagagatgcaacaagta |
108 |
Q |
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||||||| |||| |||| ||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14048536 |
acatcattagtagtgaatagatcatgcataatacaacaccaataaaattgcagtacggaaatcaataaatggaaattgaaatagagagatgcaacaagta |
14048635 |
T |
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| Q |
109 |
attgatttggattaatttcgtatgtagcagcgacatcaaataacaaggactgaattcaaatagataaggcaacaataataagaagtaacacacatgaat |
207 |
Q |
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| T |
14048636 |
attgatttggattaatttcgtatgtagcagcgacatcaaataacaaggactgaattcaaatggataaggcaacaataataagtagtaacacgcatgaat |
14048734 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 171; Significance: 5e-92; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 171; E-Value: 5e-92
Query Start/End: Original strand, 9 - 207
Target Start/End: Original strand, 13611927 - 13612125
Alignment:
| Q |
9 |
acatcatcagtattgaacagatcatgcataatacaacaccaataaaagtgcagtacagaaatcaataaatggaaattgaaatagagagatgcaacaagta |
108 |
Q |
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||||||| |||| |||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| || |
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| T |
13611927 |
acatcattagtagtgaacaaatcatgcataatacaacaccaataaaagtgcagtacggaaatcaataaatggaaattgaaatagagagatgcaacaatta |
13612026 |
T |
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| Q |
109 |
attgatttggattaatttcgtatgtagcagcgacatcaaataacaaggactgaattcaaatagataaggcaacaataataagaagtaacacacatgaat |
207 |
Q |
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| T |
13612027 |
attgattcggattaatttcgtatgtagcagcgacatcaaataacaaggactgaattcaaatagataaggcaacaataataagaagtaacactcatgaat |
13612125 |
T |
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