View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3711_high_23 (Length: 219)
Name: NF3711_high_23
Description: NF3711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3711_high_23 |
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Alignment Details
Target: chr3 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 203
Target Start/End: Original strand, 31626006 - 31626208
Alignment:
| Q |
1 |
aaatggccaacctttctctgctcattctctttaccaccaccattatcctcattttccttgaaatattgggaactagactcttgtacataagaatcgtcat |
100 |
Q |
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| T |
31626006 |
aaatggccaacctttctctgctcattctctttaccaccaccattatcctcattttccttgaaatattgggaactagactcttgtacataagaatcgtcat |
31626105 |
T |
|
| Q |
101 |
ttccattactgtttgtatccttctcatatttgccattagtaggcagcacattagattcatctccatttttcccaaccttctctttcttggctctacgttt |
200 |
Q |
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| T |
31626106 |
ttccattactgtttgtatccttctcatatttgccattagtaggcagcacattagattcatctccatttttcccaaccttctctttcttggctctacgttt |
31626205 |
T |
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| Q |
201 |
ctt |
203 |
Q |
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||| |
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| T |
31626206 |
ctt |
31626208 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 82; Significance: 7e-39; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 18 - 203
Target Start/End: Original strand, 45509297 - 45509476
Alignment:
| Q |
18 |
ctgctcattctctttaccaccaccattatcctcattttccttgaaatattgggaactagactcttgtacataagaatcgtcatttccattactgtttgta |
117 |
Q |
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|||||||||||||||||| || |||||||||||||||| |||||||| ||||||||||||||| |||||||||| ||| |||| || || || | |
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| T |
45509297 |
ctgctcattctctttaccggca---ttatcctcattttcctcaaaatattgagaactagactcttgtgcataagaatcaccatctccaatattgattaca |
45509393 |
T |
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| Q |
118 |
tccttctcatatttgccattagtaggcagcacattagattcatctccatttttcccaaccttctctttcttggctctacgtttctt |
203 |
Q |
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| |||||||||||||||||||||||||| |||||| |||||| |||||||||||| ||||||||||||| |||||||||||||| |
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| T |
45509394 |
ttcttctcatatttgccattagtaggca---cattagtttcatccccatttttcccacccttctctttctttgctctacgtttctt |
45509476 |
T |
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