View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3711_high_5 (Length: 423)
Name: NF3711_high_5
Description: NF3711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3711_high_5 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 227; Significance: 1e-125; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 18 - 270
Target Start/End: Complemental strand, 8861110 - 8860856
Alignment:
| Q |
18 |
cttatacctctagaaacacattcaaaagtttaggattatcctaatctcttgaaagaatatccatgttgtgattgtgataagtgattaattatttccttgt |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8861110 |
cttatacctctagaaacacattcaaaagtttaggattatcctaatctcttgcaagagtatccatgttgtgattgtgataagtgattaattatttccttgt |
8861011 |
T |
|
| Q |
118 |
tctctttttccttacattgtacctaattgtgtggagggaaggggacacaggaaagtgattagaactttcagctacatatgaatcatatgattgcaaacat |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
8861010 |
tctctttttccttacattgtacctaattgtgtggagggaaggggacacaggaaagtgattagaactttcagctacatatgaatcatatgattgcatacat |
8860911 |
T |
|
| Q |
218 |
gaaatctatttaaattaaaggtgttgct-acggactgaca-gctgcctaatagca |
270 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||| |||||||||||||| |
|
|
| T |
8860910 |
gaaatctatttaaattaaaggtgttgctcacggactgacaggctgcctaatagca |
8860856 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 338 - 413
Target Start/End: Complemental strand, 8860788 - 8860713
Alignment:
| Q |
338 |
gaaaaagaaatcatctgagagatatgtttactttgtatcaggagctaaattccaatacttcttgtccttttttctt |
413 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8860788 |
gaaaaagaaataatctgagagatatgtttactttgtatcaggagctaaattccaatacttcttgtccttttttctt |
8860713 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University