View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3711_high_6 (Length: 416)
Name: NF3711_high_6
Description: NF3711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3711_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 344; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 26 - 405
Target Start/End: Complemental strand, 2928541 - 2928167
Alignment:
| Q |
26 |
tgaacaggtaacaaagaacttgtggttttatgctatacataggatgcttcagatatttgtcaccattgattatgaaaaaagtgtgttaccacttgtcaat |
125 |
Q |
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| T |
2928541 |
tgaacaggtaacaaagaacttgtggttttatgctatacataggatgctt-----atttgtcaccattgattatgaaaaaagtgtgttaccacttgtcaat |
2928447 |
T |
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| Q |
126 |
agactacctttcaaccggcggtatgattaattcattatctttcttttctgaaccattcattttcatttcattgacagagcttttaaggaagatacttcag |
225 |
Q |
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| T |
2928446 |
agactacctttcaaccggcggtatgattaattcattatctttcttttctaaaccattcattttcatttcattgatagagcttttaaggaagatacttcag |
2928347 |
T |
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| Q |
226 |
aaactaaataaatattttaagaatttatgagcaatgactctgtttatgctacttattcttccttatagataggttcatgatcagtagccttaagttttct |
325 |
Q |
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| T |
2928346 |
aaactaaataaatattttaagaatttatgagcaatgactctgtttatgctacttattcttccttatagataggttcatgatcagtggccttaagttttct |
2928247 |
T |
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| Q |
326 |
attgatgcatctatatcacctttgtaacattctattacgactatctaacaatgatctggtatggcttttttctgtgctgc |
405 |
Q |
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| T |
2928246 |
attgatgcatctatatcacctttgtaacattctattacgactatctaacagtgatctggtatggcttttttctgtgctgc |
2928167 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 23 - 204
Target Start/End: Original strand, 2310522 - 2310703
Alignment:
| Q |
23 |
tgctgaacaggtaacaaagaacttgtggttttatgctatacataggatgcttcagatatttgtcaccattgattatgaaaaaagtgtgttaccacttgtc |
122 |
Q |
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| T |
2310522 |
tgctgaaaagataacaaagagcttctggttttatgctatacataggatgcttgagatatttgtcaccattgattttgaaaaaagattgtcaccacttatc |
2310621 |
T |
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| Q |
123 |
aatagactacctttcaaccggcggtatgattaattcattatctttcttttctgaaccattcattttcatttcattgacagag |
204 |
Q |
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| T |
2310622 |
gatcgactacctttcaatcgtcggtatgactaattcattatctttcttttctaaaccattcattttcatttcattgatagag |
2310703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 235 - 293
Target Start/End: Original strand, 2310927 - 2310985
Alignment:
| Q |
235 |
aaatattttaagaatttatgagcaatgactctgtttatgctacttattcttccttatag |
293 |
Q |
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| T |
2310927 |
aaatattttaagaatttatgagcaatggctctgtttatgttaattattcttccttatag |
2310985 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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