View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3711_high_9 (Length: 363)

Name: NF3711_high_9
Description: NF3711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3711_high_9
NF3711_high_9
[»] chr8 (4 HSPs)
chr8 (179-348)||(8871566-8871735)
chr8 (1-121)||(8871791-8871917)
chr8 (9-66)||(10543978-10544035)
chr8 (1-50)||(4424672-4424721)
[»] chr6 (1 HSPs)
chr6 (1-71)||(15610166-15610236)
[»] chr4 (1 HSPs)
chr4 (6-83)||(13501561-13501638)
[»] chr5 (1 HSPs)
chr5 (8-50)||(25585957-25585999)
[»] chr7 (1 HSPs)
chr7 (1-90)||(26754935-26755024)
[»] chr2 (1 HSPs)
chr2 (1-90)||(18579490-18579579)
[»] chr3 (1 HSPs)
chr3 (6-50)||(5561711-5561755)


Alignment Details
Target: chr8 (Bit Score: 162; Significance: 2e-86; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 179 - 348
Target Start/End: Complemental strand, 8871735 - 8871566
Alignment:
Q  179 gataaataaatcaataatgagctgtatatatgggtgatacagattgaagaagattgtaagctaggcacagcaaatgacatagcagaagcagttcatcaaa 278  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||    
T  8871735 gataaataaatcaataatgagctgtatatatgggtgatacagattgaagaagactgtaagctaggcacagcaaatgatatagcagaagcagttcatcaaa 8871636  T
Q  279 tattcagctacatcaataatggtagctaaagaagcaagtagctataaccttggggggttgcagaagaata 348  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8871635 tattcagctacatcaataatggtagctaaagaagcaagtagctataaccttggggggttgcagaagaata 8871566  T

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Target: chr8; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 1 - 121
Target Start/End: Complemental strand, 8871917 - 8871791
Alignment:
Q  1 aactttagtgttgagtttgtagggacacaagcaaatgaggtggtccataaattacctaagacgaccacatcatcagcttgttttcagatt------ggaa 94  Q
    ||||||||||||||||||||  ||| ||||||||||||||| | |||||||||| ||||| ||||||||||||||||||||||  |||||      | ||    
T  8871917 aactttagtgttgagtttgtgaggatacaagcaaatgaggtagcccataaattagctaaggcgaccacatcatcagcttgtttcaagattttggtagaaa 8871818  T
Q  95 tacatgctacattgaacacattttaag 121  Q
    ||||| |||||||||||||||||||||    
T  8871817 tacatactacattgaacacattttaag 8871791  T

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Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 9 - 66
Target Start/End: Original strand, 10543978 - 10544035
Alignment:
Q  9 tgttgagtttgtagggacacaagcaaatgaggtggtccataaattacctaagacgacc 66  Q
    ||||||||||||| ||| ||||||||||||||| || ||||||||| ||||| |||||    
T  10543978 tgttgagtttgtacggagacaagcaaatgaggttgttcataaattagctaaggcgacc 10544035  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 4424721 - 4424672
Alignment:
Q  1 aactttagtgttgagtttgtagggacacaagcaaatgaggtggtccataa 50  Q
    |||| |||||||||||||||| ||| ||||||||||||||| | ||||||    
T  4424721 aactctagtgttgagtttgtacggagacaagcaaatgaggttgcccataa 4424672  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 15610166 - 15610236
Alignment:
Q  1 aactttagtgttgagtttgtagggacacaagcaaatgaggtggtccataaattacctaagacgaccacatc 71  Q
    |||| |||||||||||||||  ||| |||| |||||||||| | ||||| |||| ||||||||||||||||    
T  15610166 aactctagtgttgagtttgtgaggagacaaacaaatgaggtagcccatagattagctaagacgaccacatc 15610236  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 6 - 83
Target Start/End: Original strand, 13501561 - 13501638
Alignment:
Q  6 tagtgttgagtttgtagggacacaagcaaatgaggtggtccataaattacctaagacgaccacatcatcagcttgttt 83  Q
    |||||||||||||||| ||| ||||||||||||||| |||||||| ||| | ||| |||||  ||  |||||||||||    
T  13501561 tagtgttgagtttgtacggagacaagcaaatgaggttgtccataagttagcaaaggcgaccctattgtcagcttgttt 13501638  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 50
Target Start/End: Complemental strand, 25585999 - 25585957
Alignment:
Q  8 gtgttgagtttgtagggacacaagcaaatgaggtggtccataa 50  Q
    |||||||||||||| ||| ||||||||||||||| ||||||||    
T  25585999 gtgttgagtttgtacggagacaagcaaatgaggttgtccataa 25585957  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 26754935 - 26755024
Alignment:
Q  1 aactttagtgttgagtttgtagggacacaagcaaatgaggtggtccataaattacctaagacgaccacatcatcagcttgttttcagatt 90  Q
    |||| |||||||||||||||  ||| ||||||||||||||  | ||||| |||| ||||| || ||||||| ||| || ||||| |||||    
T  26754935 aactatagtgttgagtttgtgaggagacaagcaaatgaggcagcccatagattatctaaggcggccacatcctcaactagtttttagatt 26755024  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 18579579 - 18579490
Alignment:
Q  1 aactttagtgttgagtttgtagggacacaagcaaatgaggtggtccataaattacctaagacgaccacatcatcagcttgttttcagatt 90  Q
    ||||||||||||||||||||  ||| |||| |||||||||  | ||||| |||| |||||  | ||||||| |||||| |||| ||||||    
T  18579579 aactttagtgttgagtttgtgaggagacaaacaaatgaggcagcccatagattagctaagtaggccacatcttcagctagtttccagatt 18579490  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 6 - 50
Target Start/End: Complemental strand, 5561755 - 5561711
Alignment:
Q  6 tagtgttgagtttgtagggacacaagcaaatgaggtggtccataa 50  Q
    |||||||||||||||| ||| ||||||||||||||| | ||||||    
T  5561755 tagtgttgagtttgtacggagacaagcaaatgaggttgcccataa 5561711  T

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