View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3711_low_10 (Length: 394)
Name: NF3711_low_10
Description: NF3711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3711_low_10 |
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Alignment Details
Target: chr8 (Bit Score: 358; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 1 - 384
Target Start/End: Original strand, 38124823 - 38125203
Alignment:
| Q |
1 |
cttgtctgtgtgtttttctcaatggaaaggagtataagaccatggattttatcaggctgggaagatattgaatgcaatcttattattatcagaagaagaa |
100 |
Q |
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| T |
38124823 |
cttgtctgtgtgtttttctcaatggaaaggagtataagaccatggattttattaggctgggaagatattgaatgcaatcttattattatcagaa---gaa |
38124919 |
T |
|
| Q |
101 |
gagaatcattatcattaaatatgttagattttgacagttttgtcgctgattcaataggtgactgcaatataccgggtaatgcaactcttctgtatgatat |
200 |
Q |
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| T |
38124920 |
gagaatcattatcattaaatatgttagattttgacagttttgtcgctgattcaataggtgactgcaatataccgggtaatgcaactcttctgtatgatat |
38125019 |
T |
|
| Q |
201 |
taaatttgttggtctttattcgggcaatcgaagtcgatgaagacaaaattgatcgaatacgtatacgtatatgaaccgcacgtggattaggtgagtttcc |
300 |
Q |
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| T |
38125020 |
taaatttgttggtctttattcgggcaatcgaagtcaatgaagacaaaattgatcgaatacgtatacgtatatgaaccgcacgtggattaggtgagtttcc |
38125119 |
T |
|
| Q |
301 |
tgatcttttgagaatattttattcttagattagatagacaaatactacccagcactcagattgttttatccagcttactctctg |
384 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
38125120 |
tgatcttttgagaatattttattcttagattagatagacaaatactacccagcactcagattgttttatccagcttactttctg |
38125203 |
T |
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