View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3711_low_11 (Length: 369)
Name: NF3711_low_11
Description: NF3711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3711_low_11 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 272; Significance: 1e-152; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 24 - 368
Target Start/End: Original strand, 40061010 - 40061368
Alignment:
| Q |
24 |
ataaataaataatatcacatgcatagtttatttcttatatgcacaagagatattacactggactattgtgtttt--------------ttaatatatttg |
109 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||| |||||||||||| |
|
|
| T |
40061010 |
ataaattaataatatcacatgcatagtttatttcttatatgcacaagagaaattacactggacaattgtgttttttaatatatattttttaatatatttg |
40061109 |
T |
|
| Q |
110 |
ctatatacttaagcaattattctgcagccgaagtggggtcatcttaaagatttgcacaaggccgtaaagctttgtgaggaagcgttaatagctacagaac |
209 |
Q |
| |
|
||||||||| || ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40061110 |
ctatatactgcaggaattattaggcagccgaagtggggtcatcttaaagatttgcacaaggccgtaaagctttgtgaggaagcgttaatagctacagaac |
40061209 |
T |
|
| Q |
210 |
ccaagattacttctcttggtccaaacctagaggtagaggcggtttatattgaaatttttgcccgtttatcttatttcgcgtctttggatagaatttattt |
309 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
40061210 |
ctaagattacttctcttggtccaaacctagaggtagaggcggtttatattgaaatttttgcccgtttatcttatttcgcgtcttaggatagaatttattt |
40061309 |
T |
|
| Q |
310 |
tgtaactaaaactcatccagtttgtcaatctttctctggaaaattccctgcattgagta |
368 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40061310 |
tgtaactaaaactcatccagtttgtcaatctttctctggaaaattccctgcattgagta |
40061368 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 156; E-Value: 8e-83
Query Start/End: Original strand, 32 - 338
Target Start/End: Original strand, 40086917 - 40087228
Alignment:
| Q |
32 |
ataatatcacatgcatagtttatttcttatatgcacaagagatattacactggactattgtgttttttaatatatttgctatatacttaagcaattattc |
131 |
Q |
| |
|
||||||||||||| ||||||||||||||||||| | |||||| |||||||||||| |||| ||||||||||| || |||| || || || | ||||| |
|
|
| T |
40086917 |
ataatatcacatggatagtttatttcttatatgtagaagagaaattacactggacgattggattttttaatatcttcgctacatgctgcaggagttatta |
40087016 |
T |
|
| Q |
132 |
tgcagccgaagtggggtcatcttaaagatttgcacaaggccgtaaagctttgtgaggaagcgttaatagctacagaacccaagattacttctcttggtcc |
231 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||| ||||||||||||| ||||| |||||||| |||||||||||||||||| ||||||||| |
|
|
| T |
40087017 |
ggcagccgaagtggggtcatcttaaagatgtgcacaaggccataaagctttgtgaagaagcattaatagccgcagaacccaagattacttatcttggtcc |
40087116 |
T |
|
| Q |
232 |
aaacctagaggtagaggcggtttatattgaaatttttgcccgttt-----atcttatttcgcgtctttggatagaatttattttgtaactaaaactcatc |
326 |
Q |
| |
|
||||||||||||| || |||||||||||||||||||| ||||| |||||||| |||||||| ||||| |||||||||||||||||||||||||| |
|
|
| T |
40087117 |
aaacctagaggtatagatggtttatattgaaatttttgttcgtttgaaacatcttattccgcgtcttaggatataatttattttgtaactaaaactcatc |
40087216 |
T |
|
| Q |
327 |
cagtttgtcaat |
338 |
Q |
| |
|
|||||||||| |
|
|
| T |
40087217 |
tggtttgtcaat |
40087228 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 140 - 269
Target Start/End: Original strand, 40079264 - 40079393
Alignment:
| Q |
140 |
aagtggggtcatcttaaagatttgcacaaggccgtaaagctttgtgaggaagcgttaatagctacagaacccaagattacttctcttggtccaaacctag |
239 |
Q |
| |
|
||||||||||||||||||||| | ||||||||| ||||||||||||| ||||| |||||||||| || ||||||||| | |||||||||| |||||||| |
|
|
| T |
40079264 |
aagtggggtcatcttaaagatgtacacaaggccataaagctttgtgaagaagcactaatagctactgatcccaagatttcatctcttggtcaaaacctag |
40079363 |
T |
|
| Q |
240 |
aggtagaggcggtttatattgaaatttttg |
269 |
Q |
| |
|
||||| ||| ||| | |||||||||||||| |
|
|
| T |
40079364 |
aggtataggtggtatgtattgaaatttttg |
40079393 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 134 - 201
Target Start/End: Complemental strand, 22014297 - 22014230
Alignment:
| Q |
134 |
cagccgaagtggggtcatcttaaagatttgcacaaggccgtaaagctttgtgaggaagcgttaatagc |
201 |
Q |
| |
|
||||| || |||||||||||||||||||||||||||||| ||||||||||||| ||||| || ||||| |
|
|
| T |
22014297 |
cagcccaaatggggtcatcttaaagatttgcacaaggccataaagctttgtgaagaagcattgatagc |
22014230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University