View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3711_low_15 (Length: 359)
Name: NF3711_low_15
Description: NF3711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3711_low_15 |
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| [»] scaffold0062 (4 HSPs) |
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Alignment Details
Target: scaffold0062 (Bit Score: 321; Significance: 0; HSPs: 4)
Name: scaffold0062
Description:
Target: scaffold0062; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 4 - 336
Target Start/End: Complemental strand, 5999 - 5667
Alignment:
| Q |
4 |
ttccatagaaaaataccagggagtgtggagaattgcataagatgtttgcagccagcaatgaagatctcccttggcatcttaataatcttatctgcaggct |
103 |
Q |
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| T |
5999 |
ttccaaagaaaaataccagggagtgtggagtattgcataagatgtttgcatccagcaatgaagatctcccttggcatcttaataatcttatctgcaggct |
5900 |
T |
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| Q |
104 |
cggtgtcacccgggtcggtgctaattcctggaaggaatttttcaggagagtagtcattcgctatctttgaataaagtttcacaaattcttcagatgtttg |
203 |
Q |
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| T |
5899 |
cggtgtcacccgggtcggtgctaattcctggaaggaatttttcaggagagtagtcattcgctatctttgaataaagtttcacaaattcttcagatgtttg |
5800 |
T |
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| Q |
204 |
tacaattttagtttggttgtataacttgtagtcaaccaaattaatattgtccttgttttcccaatacaatttgcggtaatgcgaatcattttgctcggat |
303 |
Q |
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| T |
5799 |
tacaattttagtttggttgtataacttgtagtcaaccaaattaatattgtccttgttttcccaatacaatttgcggtaatgcgaatcattttgctcggat |
5700 |
T |
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| Q |
304 |
ggagcaatggacacaacattgatattcagatct |
336 |
Q |
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| T |
5699 |
ggagcaatggacacaacattgatattcagatct |
5667 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0062; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 43 - 83
Target Start/End: Complemental strand, 16282 - 16242
Alignment:
| Q |
43 |
agatgtttgcagccagcaatgaagatctcccttggcatctt |
83 |
Q |
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| T |
16282 |
agatgtctgcagccagcaatgaagtgctcccttggcatctt |
16242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0062; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 43 - 83
Target Start/End: Complemental strand, 26450 - 26410
Alignment:
| Q |
43 |
agatgtttgcagccagcaatgaagatctcccttggcatctt |
83 |
Q |
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| T |
26450 |
agatgtctgcagccagcaatgaagtgctcccttggcatctt |
26410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0062; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 43 - 83
Target Start/End: Complemental strand, 36616 - 36576
Alignment:
| Q |
43 |
agatgtttgcagccagcaatgaagatctcccttggcatctt |
83 |
Q |
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| T |
36616 |
agatgtctgcagccagcaatgaagtgctcccttggcatctt |
36576 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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