View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3711_low_18 (Length: 348)
Name: NF3711_low_18
Description: NF3711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3711_low_18 |
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Alignment Details
Target: chr7 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 20 - 330
Target Start/End: Complemental strand, 3817225 - 3816917
Alignment:
| Q |
20 |
atatgtatccgatgactattagtcatcgatgcctattctgttttttcgaagnnnnnnnngttctaaacctacatgtgaatttgttttttcggttatcgat |
119 |
Q |
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| T |
3817225 |
atatgtatccgatgactattagtcatcgatgcctattctgttttt-cgaagttttttttgttctaaacctacatgtgaatttgttttt-cggttattgat |
3817128 |
T |
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| Q |
120 |
gtcgtttgcaaattttcgtttatccatatgccgtttgcaaatctttggttatcgattgcctatttgcctctaatttatccatgcttttgttttctttaat |
219 |
Q |
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|||||||| |||||||||||||||||| ||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
3817127 |
gtcgtttgtaaattttcgtttatccatgtgccgtttgcaaatctttggtcatcgattgcctatttgactctaatttatccatgcttttgttttctttaat |
3817028 |
T |
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| Q |
220 |
attgaagtgacaaacatttgtgcatttaatttcggtcctcgatgtccatcgtgattaaatattgagtttgcatactttgacttttggaattgatgtgcct |
319 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3817027 |
attgaagtgacaaacatttgtgcatttaatttcagtcctcgatgtccatcctgattaaatattgagtttgcatactttgacttttggaattgatgtgcct |
3816928 |
T |
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| Q |
320 |
gtgtttattgt |
330 |
Q |
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||||||||||| |
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| T |
3816927 |
gtgtttattgt |
3816917 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 86; Significance: 5e-41; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 229 - 333
Target Start/End: Original strand, 31052194 - 31052296
Alignment:
| Q |
229 |
acaaacatttgtgcatttaatttcggtcctcgatgtccatcgtgattaaatattgagtttgcatactttgacttttggaattgatgtgcctgtgtttatt |
328 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| |
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| T |
31052194 |
acaaacatttgtgcatttaatttcggtcctcgatgtccatcttgattaaatattgagtttccatactttgacttttggaat--atgtgcctgtgtttatt |
31052291 |
T |
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| Q |
329 |
gttat |
333 |
Q |
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||||| |
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| T |
31052292 |
gttat |
31052296 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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