View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3711_low_24 (Length: 276)

Name: NF3711_low_24
Description: NF3711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3711_low_24
NF3711_low_24
[»] chr7 (10 HSPs)
chr7 (95-260)||(2133913-2134079)
chr7 (5-98)||(2130024-2130117)
chr7 (177-260)||(2137122-2137205)
chr7 (53-122)||(2064265-2064334)
chr7 (185-260)||(1698331-1698406)
chr7 (177-235)||(2103529-2103587)
chr7 (177-235)||(2121243-2121301)
chr7 (181-243)||(2693393-2693455)
chr7 (181-235)||(2064430-2064484)
chr7 (180-252)||(2055133-2055205)


Alignment Details
Target: chr7 (Bit Score: 130; Significance: 2e-67; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 95 - 260
Target Start/End: Original strand, 2133913 - 2134079
Alignment:
Q  95 cttactaaaggaaagcacaacaacaacaaaaatacaaggaatttcaactcataagatccnnnnnnn-aagccaactaagtacttgcagaaagaaagtgct 193  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||    
T  2133913 cttactaaaggaaagcacaacaacaacaaaaacacaaggaatttcaactcataagatccttttttttaagccaactaagtacttgcagaaagaaagtgct 2134012  T
Q  194 tcccaatgccattccagcaacaagaccacctccatacccaataagcactattttccaatcaaattca 260  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2134013 tcccactgccattccagcaacaagaccacctccatacccaataagcactattttccaatcaaattca 2134079  T

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Target: chr7; HSP #2
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 5 - 98
Target Start/End: Original strand, 2130024 - 2130117
Alignment:
Q  5 gcccaaagacctaacaggtcacatttttccgcatcaccaaaactactttatttcataccaccaacaattaaaatacatacaaagcatactctta 98  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||  ||||||||||||||||||||||    
T  2130024 gcccaaagacctaacaggtcacatttttccgcatcaccaaaactactttatttcataccaacaacaattagtatacatacaaagcatactctta 2130117  T

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Target: chr7; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 177 - 260
Target Start/End: Original strand, 2137122 - 2137205
Alignment:
Q  177 tgcagaaagaaagtgcttcccaatgccattccagcaacaagaccacctccatacccaataagcactattttccaatcaaattca 260  Q
    ||||||||| || || |||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||| ||||    
T  2137122 tgcagaaagtaactgtttcccaatgccactccagcaacaagacctcctccatacccaataagcactattttccaatcaatttca 2137205  T

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Target: chr7; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 53 - 122
Target Start/End: Original strand, 2064265 - 2064334
Alignment:
Q  53 tatttcataccaccaacaattaaaatacatacaaagcatactcttactaaaggaaagcacaacaacaaca 122  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||  || ||||| |||||||    
T  2064265 tatttcataccaacaacaattaaaatacatacaaagcatactcttactaaagacaatcacaataacaaca 2064334  T

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Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 185 - 260
Target Start/End: Complemental strand, 1698406 - 1698331
Alignment:
Q  185 gaaagtgcttcccaatgccattccagcaacaagaccacctccatacccaataagcactattttccaatcaaattca 260  Q
    ||||||| |||||||||||| ||| ||||||||||||||| |||||||||| ||   || |||||| |||||||||    
T  1698406 gaaagtgattcccaatgccactcctgcaacaagaccacctacatacccaatcagacttactttccagtcaaattca 1698331  T

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Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 177 - 235
Target Start/End: Original strand, 2103529 - 2103587
Alignment:
Q  177 tgcagaaagaaagtgcttcccaatgccattccagcaacaagaccacctccatacccaat 235  Q
    ||||||||| ||||| |||||||||||| |||||||||||| ||||| ||||| |||||    
T  2103529 tgcagaaagtaagtgtttcccaatgccactccagcaacaagtccaccgccatatccaat 2103587  T

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Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 177 - 235
Target Start/End: Original strand, 2121243 - 2121301
Alignment:
Q  177 tgcagaaagaaagtgcttcccaatgccattccagcaacaagaccacctccatacccaat 235  Q
    ||||||||| ||||| |||||||||||| |||||||||||| ||||| ||||| |||||    
T  2121243 tgcagaaagtaagtgtttcccaatgccactccagcaacaagtccaccgccatatccaat 2121301  T

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Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 181 - 243
Target Start/End: Complemental strand, 2693455 - 2693393
Alignment:
Q  181 gaaagaaagtgcttcccaatgccattccagcaacaagaccacctccatacccaataagcacta 243  Q
    ||||| ||||| |||||||||| |  ||||||||||  |||||||||||||||||||||||||    
T  2693455 gaaagtaagtgtttcccaatgcaacaccagcaacaaatccacctccatacccaataagcacta 2693393  T

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Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 235
Target Start/End: Original strand, 2064430 - 2064484
Alignment:
Q  181 gaaagaaagtgcttcccaatgccattccagcaacaagaccacctccatacccaat 235  Q
    |||||||||||||||||||||  | |||||||||||| ||||| ||||| |||||    
T  2064430 gaaagaaagtgcttcccaatgaaactccagcaacaagtccaccgccatatccaat 2064484  T

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Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 180 - 252
Target Start/End: Original strand, 2055133 - 2055205
Alignment:
Q  180 agaaagaaagtgcttcccaatgccattccagcaacaagaccacctccatacccaataagcactattttccaat 252  Q
    |||||| ||||| |||||||||||| ||||||| |||| ||||| ||||| ||||| || |||| | ||||||    
T  2055133 agaaagtaagtgtttcccaatgccactccagcatcaagtccaccgccatatccaatcagaactactgtccaat 2055205  T

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