View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3711_low_26 (Length: 253)
Name: NF3711_low_26
Description: NF3711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3711_low_26 |
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Alignment Details
Target: chr7 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 19 - 242
Target Start/End: Original strand, 5689899 - 5690122
Alignment:
| Q |
19 |
accaagaagctcttgtggcaaatccttaatacctctcaaataaaatgtatagaaaatcttgaatggaaaaacaatttgatgcaacttcacttgaccctta |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5689899 |
accaagaagctcttgtggcaaatccttaatacctctcaaataaaatgtatagaaaatcttgaatggaaaaacaatttgatgcaacttcacttgaccctta |
5689998 |
T |
|
| Q |
119 |
acaccttcaaatattccagaaccaccagtcacagctagataagtgtcctcaggataggttaaatatggtccttgaactgctaagtgaccataatctccaa |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
5689999 |
acaccttcaaatattccagaaccaccagtcacagctagataagtgtcctcaggataggttaaatatggtccttgaactgctaagtgaccataatcaccaa |
5690098 |
T |
|
| Q |
219 |
aatggaaactgtagattgcttcat |
242 |
Q |
| |
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|||||||||||||||||||||||| |
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| T |
5690099 |
aatggaaactgtagattgcttcat |
5690122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 110; Significance: 2e-55; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 19 - 242
Target Start/End: Original strand, 25914583 - 25914803
Alignment:
| Q |
19 |
accaagaagctcttgtggcaaatccttaatacctctcaaataaaatgtatagaaaatcttgaatggaaaaacaatttgatgcaacttcacttgaccctta |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||| ||||||||||||||||||| | ||||||||| || || |
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| T |
25914583 |
accaagaagctcttgtggcaaatccttaatacccttcaaataaaatgtgtagaaaatcttaaatggaaaaacaatttgattgagcttcacttggcctgta |
25914682 |
T |
|
| Q |
119 |
acaccttcaaatattccagaaccaccagtcacagctagataagtgtcctcaggataggttaaatatggtccttgaactgctaagtgaccataatctccaa |
218 |
Q |
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||||||||||| ||||||| |||||||||||||| |||||| |||||||| |||||||| || |||||||| || |||| |||||||| ||||||| |
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| T |
25914683 |
acaccttcaaaaattccagtaccaccagtcacagttagatatgtgtcctc---ataggttaggtaaggtccttgcacagctatttgaccatagtctccaa |
25914779 |
T |
|
| Q |
219 |
aatggaaactgtagattgcttcat |
242 |
Q |
| |
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|| ||||||||||||||||||| |
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| T |
25914780 |
cgtgaaaactgtagattgcttcat |
25914803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 66; Significance: 3e-29; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 21 - 242
Target Start/End: Complemental strand, 6792786 - 6792565
Alignment:
| Q |
21 |
caagaagctcttgtggcaaatccttaatacctctcaaataaaatgtatagaaaatcttgaatggaaaaacaatttgatgcaacttcacttgacccttaac |
120 |
Q |
| |
|
|||||| ||| |||||||||||||||||||| | | ||||||||| || || ||||| |||||||| ||||||||||| | ||| |||||||| | ||| |
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| T |
6792786 |
caagaaactcatgtggcaaatccttaatacccttaagataaaatgtgtaaaatatcttaaatggaaacacaatttgatgaagcttaacttgaccataaac |
6792687 |
T |
|
| Q |
121 |
accttcaaatattccagaaccaccagtcacagctagataagtgtcctcaggataggttaaatatggtccttgaactgctaagtgaccataatctccaaaa |
220 |
Q |
| |
|
||||||||||||||||| |||||||||||||| | |||||| ||||| ||| |||||||| | ||||| || | | |||||||| ||||||||| |
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| T |
6792686 |
accttcaaatattccagttccaccagtcacagccaaataagtatcctcctcataagttaaataagaaccttgcacagaaatatgaccatactctccaaaa |
6792587 |
T |
|
| Q |
221 |
tggaaactgtagattgcttcat |
242 |
Q |
| |
|
| ||||| || |||||||||| |
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|
| T |
6792586 |
taaaaactatatattgcttcat |
6792565 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 32 - 147
Target Start/End: Complemental strand, 6800246 - 6800131
Alignment:
| Q |
32 |
tgtggcaaatccttaatacctctcaaataaaatgtatagaaaatcttgaatggaaaaacaatttgatgcaacttcacttgacccttaacaccttcaaata |
131 |
Q |
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|||||||||||||||||||| | | ||||||||| || || | ||| |||||||| ||||||||||| | ||| |||||||| | |||||||||||||| |
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| T |
6800246 |
tgtggcaaatccttaatacccataagataaaatgtgtaaaatagcttaaatggaaacacaatttgatgaagcttaacttgaccataaacaccttcaaata |
6800147 |
T |
|
| Q |
132 |
ttccagaaccaccagt |
147 |
Q |
| |
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|||||| |||||||| |
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|
| T |
6800146 |
ttccagttccaccagt |
6800131 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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