View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3711_low_30 (Length: 242)
Name: NF3711_low_30
Description: NF3711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3711_low_30 |
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Alignment Details
Target: chr5 (Bit Score: 140; Significance: 2e-73; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 16 - 224
Target Start/End: Original strand, 28411333 - 28411552
Alignment:
| Q |
16 |
aatatcatttgatcatcgtgatcacttcagagaggaattccgcataatnnnnnnnccattga-----------cagcatgacattcaaaaaagttggaaa |
104 |
Q |
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| T |
28411333 |
aatatcatttgatcatcgtgatcacttcagagaggaattccgcataatacaaaaaccattgacaaatacttgacagcatgacattcaaaaaagttggaaa |
28411432 |
T |
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| Q |
105 |
agcaactacctgctgccatccaagaggagttaggtttgcatcnnnnnnntcataagataagtaagcatcatggttcttttctccttctacattatgaact |
204 |
Q |
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| T |
28411433 |
agcaactacctgctgccatccaagaggagttaggtttgcatcaaaaaaatcataagataagtaagcatcatggttcttttctccttctacattatgaact |
28411532 |
T |
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| Q |
205 |
ccttgggcatgcctaacctg |
224 |
Q |
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|||||||||||||||||||| |
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| T |
28411533 |
ccttgggcatgcctaacctg |
28411552 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 154 - 224
Target Start/End: Complemental strand, 52013273 - 52013203
Alignment:
| Q |
154 |
tcataagataagtaagcatcatggttcttttctccttctacattatgaactccttgggcatgcctaacctg |
224 |
Q |
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| T |
52013273 |
tcataagataagtacgcatcagggttcttgtctccttcaacattgtgaaacccttgggcatgtctaacctg |
52013203 |
T |
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