View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3711_low_36 (Length: 203)
Name: NF3711_low_36
Description: NF3711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3711_low_36 |
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Alignment Details
Target: chr4 (Bit Score: 151; Significance: 4e-80; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 151; E-Value: 4e-80
Query Start/End: Original strand, 18 - 188
Target Start/End: Original strand, 43288851 - 43289021
Alignment:
| Q |
18 |
gtttgaggctaagtttggatgccttttgagcttacggtctaattttgaatatgttataatgcatcatgaattttggttcttttcaaatattattagcact |
117 |
Q |
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| T |
43288851 |
gtttgaggctaactttggatgccttttgagcttacggtctaattttgaatatgttataatgcatcatgaattttggttcttttcaaatattattagtact |
43288950 |
T |
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| Q |
118 |
gtcatgtcaaaaatttgatttcaccctgaagttaattttaaagtatatgttatatacattctaagagtatt |
188 |
Q |
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| T |
43288951 |
attatgtcaaaaatttgatttcaccttgaagttaattttaaagtatatgttatatacattctaagagtatt |
43289021 |
T |
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