View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3711_low_5 (Length: 441)
Name: NF3711_low_5
Description: NF3711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3711_low_5 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 347; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 11 - 421
Target Start/End: Original strand, 8975340 - 8975744
Alignment:
| Q |
11 |
catcatcacttaaacttgacatgctttttatttttgtttaacatttgaaatgttataaaaatattggtaacaattataactatttaatttatgaagtaac |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8975340 |
catcatcacttaaacttgacatgctttttatttttgtttaacatttgaaatgttataaaaatattggtaacaattataactatttaatttatgaagtaac |
8975439 |
T |
|
| Q |
111 |
ttttaatagaaattttgttacgacctaagcttacaagtgcaattaagggtagattttccttaacttctgagttaaaaagtacaaaaataatagggttatc |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8975440 |
ttttaatagaaattttgttacgacctaagcttacaagtgcaattaagggtagattttccttaacttctgagttaaaaagtacaaaaataatagggttatc |
8975539 |
T |
|
| Q |
211 |
tgcaaatttcccatgttccttccttccttcccttgtctgcacaaattccattattggtactttgttgggatatcttgttgtacaagccttttcctgcata |
310 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||| |||||||||||||||||| |||||||||||||||| |
|
|
| T |
8975540 |
tgcaaatttcccatgttccttccttccatcccttgtctgcacaaattccattcttggtactttgctgggatatcttgttgtaccagccttttcctgcata |
8975639 |
T |
|
| Q |
311 |
ttctctttgttaatgttcannnnnnngtagtgagcgcaaaaatcaggaattcaattcttgctgaaatatagttttgcacactagctataggcaaaaacta |
410 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||| |
|
|
| T |
8975640 |
ttctctttgttaatgttcatttttttgtagtgagcgcaaaaatcaggaattcaattcttgctaaaatatagttttgcacac------taggcaaaaacta |
8975733 |
T |
|
| Q |
411 |
tgagtggagtt |
421 |
Q |
| |
|
||||||||||| |
|
|
| T |
8975734 |
tgagtggagtt |
8975744 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 55 - 128
Target Start/End: Original strand, 8963879 - 8963952
Alignment:
| Q |
55 |
ttgaaatgttataaaaatattggtaacaattataactatttaatttatgaagtaacttttaatagaaattttgt |
128 |
Q |
| |
|
||||||| |||||||||||| |||||| ||||||||||||||| || ||||||||||||||||||| |||| |
|
|
| T |
8963879 |
ttgaaattttataaaaatataggtaacctttataactatttaatctagacagtaacttttaatagaaatgttgt |
8963952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 79 - 128
Target Start/End: Complemental strand, 17009165 - 17009116
Alignment:
| Q |
79 |
aacaattataactatttaatttatgaagtaacttttaatagaaattttgt |
128 |
Q |
| |
|
|||| ||||||||||||||| | || ||||||||||||||||||| |||| |
|
|
| T |
17009165 |
aacatttataactatttaatctttgcagtaacttttaatagaaatgttgt |
17009116 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University