View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3711_low_9 (Length: 398)
Name: NF3711_low_9
Description: NF3711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3711_low_9 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 305; Significance: 1e-171; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 28 - 380
Target Start/End: Original strand, 55202385 - 55202737
Alignment:
| Q |
28 |
gagtgatagctacttaactaatgttcctataaagctcaccaaatttcaaatatgcatgcaataatgttatttaactagacaaagtgcaatgattttgttt |
127 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55202385 |
gagtgatagctacttaactattgttcctataaagctcaccaaatttcaaatatgcatgcaataatgttatttaactagacaaagtgcaatgattttgttt |
55202484 |
T |
|
| Q |
128 |
gtgagacagaataaatagcctccaccagcatcttcctatacttcttcttttgatgctccccactcttagttttaacaacctccttctcaagcatcacaat |
227 |
Q |
| |
|
||| |||||||| |||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
55202485 |
gtgtgacagaatgaatagcctccaccagcatcttcctatacttcttcttcagatgctccccagtcttagttttaacaacctccttctcaagcatcacaac |
55202584 |
T |
|
| Q |
228 |
aacctcatgaatattctcaggagttacaagttcaagagcaacatcaataatctgccttctaacaacatagttacgagcctttgaaagcgccctaagcaca |
327 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| |||| ||||||||||||| |
|
|
| T |
55202585 |
aacctcatgaatattctcaggagttacaagttcaagagcaacatcaataatcttccttccaacaacatagttacgagccttcgaaaacgccctaagcaca |
55202684 |
T |
|
| Q |
328 |
tccataaccatatcaaccatattttccctattaagctcattcaaacgatcaag |
380 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
55202685 |
tccataaccatatcaaccataatttccctattaagctcattcaaacgatcaag |
55202737 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 180 - 360
Target Start/End: Complemental strand, 1472202 - 1472025
Alignment:
| Q |
180 |
atgctccccactcttagttttaacaacctccttctcaagcatcacaataacctcatgaatattctcaggagttacaagttcaagagcaacatcaataatc |
279 |
Q |
| |
|
||||||||| |||| || |||||||||||||||| |||||||| || ||||| || |||||||| || || | ||| |||||||||| ||||||| || |
|
|
| T |
1472202 |
atgctccccgctctgcgtcttaacaacctccttcttaagcatcataacaacctgatcaatattcttcggcgtaataagctcaagagcaatatcaatagtc |
1472103 |
T |
|
| Q |
280 |
tgccttctaacaacatagttacgagcctttgaaagcgccctaagcacatccataaccatatcaaccatattttccctatta |
360 |
Q |
| |
|
| || |||| | ||| ||| ||| | || | |||||||||||||||||||||||||||||||||| | ||||||||| |
|
|
| T |
1472102 |
tttctcctaatatcatgattaggagtc---gataacgccctaagcacatccataaccatatcaaccataatctccctatta |
1472025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 311 - 360
Target Start/End: Complemental strand, 46467160 - 46467111
Alignment:
| Q |
311 |
aaagcgccctaagcacatccataaccatatcaaccatattttccctatta |
360 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||| | ||||||||| |
|
|
| T |
46467160 |
aaagtgccctaagcacatccataaccatatcaaccataatctccctatta |
46467111 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University