View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3712_high_3 (Length: 398)
Name: NF3712_high_3
Description: NF3712
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3712_high_3 |
 | |
|
| [»] scaffold0650 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0650 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: scaffold0650
Description:
Target: scaffold0650; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 25 - 387
Target Start/End: Original strand, 7361 - 7732
Alignment:
| Q |
25 |
gcttcctttcgacaaagattgctggtaccccatatatatataa--------tccatattactgcatggttttcattgaatttccattgattggaattaaa |
116 |
Q |
| |
|
|||||||| ||||| ||||||||||||||||||||||||||| |||||||| | ||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
7361 |
gcttccttgcgacatagattgctggtaccccatatatatatatatatattttccatattgccgcatgattttcattgaatttccattgattggaattaaa |
7460 |
T |
|
| Q |
117 |
caaacaccttgccgtgtcaacctattcaaattggtgtgcaaatatattggtgcggttgctgtacgtgttgtttgagttctaagagtaccttgctgctact |
216 |
Q |
| |
|
||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
7461 |
caaacacctagccgtgtcaacccattcaaattggtgtgcaaatatattggtgcggttgctgtacgtgttgtttgagttctaagactaccttgctgctact |
7560 |
T |
|
| Q |
217 |
tgtgaaaaatggaaaacacactgtcattgtgcttcactataaatatattaatcgtcacaactcacaatttcctcttccaa-nnnnnnngaaggagatttc |
315 |
Q |
| |
|
||||||||||| ||||| ||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
7561 |
tgtgaaaaatgaaaaacgcactgtcattgtggttcactataaatatattaattgtcacaactcacaatttcctcttccaattttttctgaaggagatttc |
7660 |
T |
|
| Q |
316 |
cttgtacaagtatttaatatttatttgttacattgatttttcgcttacaacttcgtcgattatgaccttctt |
387 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
7661 |
ctcgtacaagtatttaatatttatttgttacattgatttttcgcttacagcttcgtcgattatgaccttctt |
7732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 254; Significance: 1e-141; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 25 - 387
Target Start/End: Original strand, 18432264 - 18432635
Alignment:
| Q |
25 |
gcttcctttcgacaaagattgctggtaccccatatatatataa--------tccatattactgcatggttttcattgaatttccattgattggaattaaa |
116 |
Q |
| |
|
|||||||| ||||| ||||||||||||||||||||||||||| |||||||| | ||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
18432264 |
gcttccttgcgacatagattgctggtaccccatatatatatatatatattttccatattgccgcatgattttcattgaatttccattgattggaattaaa |
18432363 |
T |
|
| Q |
117 |
caaacaccttgccgtgtcaacctattcaaattggtgtgcaaatatattggtgcggttgctgtacgtgttgtttgagttctaagagtaccttgctgctact |
216 |
Q |
| |
|
||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
18432364 |
caaacacctagccgtgtcaacccattcaaattggtgtgcaaatatattggtgcggttgctgtacgtgttgtttgagttctaagactaccttgctgctact |
18432463 |
T |
|
| Q |
217 |
tgtgaaaaatggaaaacacactgtcattgtgcttcactataaatatattaatcgtcacaactcacaatttcctcttccaa-nnnnnnngaaggagatttc |
315 |
Q |
| |
|
||||||||||| ||||| ||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
18432464 |
tgtgaaaaatgaaaaacgcactgtcattgtggttcactataaatatattaattgtcacaactcacaatttcctcttccaattttttctgaaggagatttc |
18432563 |
T |
|
| Q |
316 |
cttgtacaagtatttaatatttatttgttacattgatttttcgcttacaacttcgtcgattatgaccttctt |
387 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
18432564 |
ctcgtacaagtatttaatatttatttgttacattgatttttcgcttacagcttcgtcgattatgaccttctt |
18432635 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 213 - 387
Target Start/End: Original strand, 18444826 - 18445001
Alignment:
| Q |
213 |
tacttgtgaaaaatggaaaacacactgtcattgtgcttcactataaatatattaatcgtcacaactcacaatttcctcttccaannnnnnn-gaaggaga |
311 |
Q |
| |
|
||||||||||||||| ||||| ||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||| |||||||| |
|
|
| T |
18444826 |
tacttgtgaaaaatgaaaaacgcactgtcattgtggttcactataaatatattaattgtcacaactcacaatttcctcttccaatttttggtgaaggaga |
18444925 |
T |
|
| Q |
312 |
tttccttgtacaagtatttaatatttatttgttacattgatttttcgcttacaacttcgtcgattatgaccttctt |
387 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
18444926 |
tttcctcctacaagtatttaatatttatttgttacattgatttttcgctcacaacttcgtcgattatgaccttctt |
18445001 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 213 - 387
Target Start/End: Original strand, 18436653 - 18436827
Alignment:
| Q |
213 |
tacttgtgaaaaatggaaaacacactgtcattgtgcttcactataaatatattaatcgtcacaactcacaatttcctcttccaannnnnnn-gaaggaga |
311 |
Q |
| |
|
||||||||||||||| ||||| ||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||| ||||||| |
|
|
| T |
18436653 |
tacttgtgaaaaatgaaaaacgcactgtcattgtggatcactataaatatattaattgtcacaactcacaatttcctcttccaattttcggtgaaggag- |
18436751 |
T |
|
| Q |
312 |
tttccttgtacaagtatttaatatttatttgttacattgatttttcgcttacaacttcgtcgattatgaccttctt |
387 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
18436752 |
tttcctcgtacaagtatttaatatttatttgttacattgatttttcgcttacagcttcgtcgattatgaccttctt |
18436827 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 213 - 384
Target Start/End: Original strand, 18440928 - 18441100
Alignment:
| Q |
213 |
tacttgtgaaaaatggaaaacacactgtcattgtgcttcactataaatatattaatcgtcacaactcacaatttcctcttccaannnnnnn-gaaggaga |
311 |
Q |
| |
|
||||||||||||||| ||||| |||||||||| || ||||||||||||||||||| ||||||||||||||||||||||||||| |||| ||| |
|
|
| T |
18440928 |
tacttgtgaaaaatgaaaaacgcactgtcattatggatcactataaatatattaattgtcacaactcacaatttcctcttccaattttcggtgaagaaga |
18441027 |
T |
|
| Q |
312 |
tttccttgtacaagtatttaatatttatttgttacattgatttttcgcttacaacttcgtcgattatgacctt |
384 |
Q |
| |
|
|||||| ||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||| |
|
|
| T |
18441028 |
tttcctcgtataagtatttaatatttatttgttacattgatttttcgcttacaccttcgtcgattatcacctt |
18441100 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University