View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3712_low_11 (Length: 274)
Name: NF3712_low_11
Description: NF3712
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3712_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 42 - 261
Target Start/End: Complemental strand, 49268744 - 49268525
Alignment:
| Q |
42 |
aacgtgctacatgctcactactcctcatttggttccttcatgcaccacatcttactaggagacgatgtgcgctatggtaccaatatattttttcaatgtg |
141 |
Q |
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| T |
49268744 |
aacgtgctacatgctcactactcctcatttggttccttcatgcacgacatcttactaggagacgatgtgcgctatggtaccaatatattttttcaatgtg |
49268645 |
T |
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| Q |
142 |
ttttcccgttacacattataagaaaaacttctcatagaccattcatcccataattggtccaaatcaaacatgtttaattatggaattttatgttcatggc |
241 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
49268644 |
ttttcccgttacacattataagaaaaacttctcgtagaccattcatcccataattggtccaaatcaaacatgtttaattattgaattttatgttcatggc |
49268545 |
T |
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| Q |
242 |
cgaaactaaaactcgtcttc |
261 |
Q |
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|||||||||||||||||||| |
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| T |
49268544 |
cgaaactaaaactcgtcttc |
49268525 |
T |
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