View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3712_low_17 (Length: 203)

Name: NF3712_low_17
Description: NF3712
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3712_low_17
NF3712_low_17
[»] chr7 (15 HSPs)
chr7 (22-186)||(48401352-48401516)
chr7 (29-89)||(38397480-38397540)
chr7 (23-88)||(19563159-19563224)
chr7 (22-85)||(5523795-5523858)
chr7 (22-85)||(29151585-29151648)
chr7 (22-85)||(37117908-37117971)
chr7 (22-85)||(40857403-40857466)
chr7 (37-90)||(41780260-41780313)
chr7 (30-89)||(24382589-24382648)
chr7 (22-88)||(4227333-4227399)
chr7 (31-85)||(23138651-23138705)
chr7 (22-88)||(38261000-38261066)
chr7 (22-95)||(1573904-1573977)
chr7 (22-82)||(22752897-22752957)
chr7 (22-82)||(24829128-24829187)
[»] chr8 (17 HSPs)
chr8 (22-85)||(41562444-41562507)
chr8 (22-85)||(16395375-16395438)
chr8 (22-88)||(25893850-25893916)
chr8 (23-89)||(34540128-34540194)
chr8 (22-63)||(1766732-1766773)
chr8 (22-63)||(14258328-14258369)
chr8 (31-90)||(25199043-25199102)
chr8 (22-85)||(31639165-31639228)
chr8 (22-85)||(43820870-43820933)
chr8 (22-64)||(20993560-20993602)
chr8 (22-72)||(35222288-35222338)
chr8 (31-72)||(5682295-5682336)
chr8 (22-91)||(7772113-7772182)
chr8 (6-63)||(12965265-12965322)
chr8 (22-82)||(5895858-5895918)
chr8 (30-82)||(37953788-37953840)
chr8 (30-82)||(42650173-42650225)
[»] chr5 (22 HSPs)
chr5 (22-89)||(10070750-10070817)
chr5 (22-82)||(9068808-9068868)
chr5 (35-90)||(19836163-19836218)
chr5 (22-88)||(10458725-10458791)
chr5 (31-92)||(32466564-32466625)
chr5 (22-85)||(671122-671185)
chr5 (22-85)||(4617829-4617892)
chr5 (22-85)||(9902564-9902627)
chr5 (22-85)||(16496602-16496665)
chr5 (31-90)||(24652386-24652445)
chr5 (22-85)||(39150989-39151052)
chr5 (31-84)||(972666-972720)
chr5 (31-85)||(6041916-6041970)
chr5 (28-82)||(10011475-10011529)
chr5 (22-84)||(37940921-37940983)
chr5 (22-88)||(39527931-39527997)
chr5 (30-84)||(43150229-43150283)
chr5 (22-83)||(2025744-2025805)
chr5 (22-63)||(15067203-15067244)
chr5 (22-87)||(21067437-21067502)
chr5 (40-88)||(12819626-12819674)
chr5 (22-90)||(23219183-23219251)
[»] chr1 (11 HSPs)
chr1 (21-72)||(43500205-43500256)
chr1 (22-89)||(11403167-11403234)
chr1 (22-72)||(13948119-13948169)
chr1 (29-82)||(46850969-46851022)
chr1 (22-82)||(36586256-36586316)
chr1 (22-89)||(15331125-15331192)
chr1 (28-90)||(30455201-30455263)
chr1 (37-95)||(40685521-40685579)
chr1 (38-91)||(19279931-19279984)
chr1 (29-65)||(14191752-14191788)
chr1 (38-90)||(40241485-40241537)
[»] chr6 (12 HSPs)
chr6 (37-90)||(23383134-23383187)
chr6 (22-84)||(2958996-2959058)
chr6 (22-89)||(2395620-2395687)
chr6 (37-88)||(12795097-12795148)
chr6 (30-85)||(15640519-15640574)
chr6 (22-85)||(28594134-28594197)
chr6 (22-85)||(32643791-32643854)
chr6 (31-85)||(7098808-7098862)
chr6 (22-92)||(31205246-31205316)
chr6 (30-91)||(4480470-4480531)
chr6 (23-63)||(22721275-22721315)
chr6 (22-90)||(31747049-31747117)
[»] chr4 (14 HSPs)
chr4 (23-88)||(54864395-54864460)
chr4 (22-84)||(28187227-28187289)
chr4 (28-64)||(2402265-2402301)
chr4 (22-82)||(9064852-9064912)
chr4 (32-84)||(36751973-36752025)
chr4 (22-85)||(3084305-3084368)
chr4 (22-85)||(42116483-42116546)
chr4 (37-88)||(51425329-51425380)
chr4 (30-84)||(41323537-41323591)
chr4 (22-87)||(13218197-13218262)
chr4 (23-84)||(54907956-54908017)
chr4 (22-86)||(5880349-5880413)
chr4 (37-85)||(13389022-13389070)
chr4 (22-90)||(35828271-35828339)
[»] chr3 (13 HSPs)
chr3 (23-84)||(23525970-23526031)
chr3 (31-88)||(46311515-46311572)
chr3 (22-90)||(32590969-32591037)
chr3 (28-88)||(50238909-50238969)
chr3 (22-88)||(12948809-12948875)
chr3 (22-82)||(11249965-11250025)
chr3 (22-85)||(38127905-38127968)
chr3 (28-90)||(40193025-40193087)
chr3 (22-63)||(12088345-12088386)
chr3 (22-63)||(28731871-28731912)
chr3 (22-91)||(40559670-40559739)
chr3 (37-85)||(19961371-19961419)
chr3 (37-85)||(47410830-47410878)
[»] chr2 (17 HSPs)
chr2 (36-92)||(11061378-11061434)
chr2 (22-89)||(39310364-39310431)
chr2 (22-88)||(43461397-43461463)
chr2 (31-84)||(18779914-18779967)
chr2 (22-82)||(3048547-3048607)
chr2 (22-90)||(11816839-11816907)
chr2 (22-89)||(38463137-38463204)
chr2 (22-85)||(42007278-42007341)
chr2 (31-85)||(42211280-42211334)
chr2 (22-63)||(10202194-10202235)
chr2 (28-85)||(16535012-16535069)
chr2 (36-85)||(18999331-18999380)
chr2 (31-88)||(42133514-42133571)
chr2 (22-94)||(727352-727424)
chr2 (37-85)||(8859365-8859413)
chr2 (37-85)||(23497590-23497638)
chr2 (37-85)||(35706854-35706902)
[»] scaffold0122 (1 HSPs)
scaffold0122 (31-84)||(15668-15721)


Alignment Details
Target: chr7 (Bit Score: 141; Significance: 4e-74; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 22 - 186
Target Start/End: Original strand, 48401352 - 48401516
Alignment:
Q  22 gaacctcgatcatagcatccgacctaacaatttcaacattttactagttgaattaggacttctgaatataatgatccatgtttgacgtatgagacctctt 121  Q
    ||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||| |||||||||||    
T  48401352 gaaccccgatcatagcatccgacctaacaatttcaacattttactaattgaattaggacttccgaatataatgatccatgtttgacgtttgagacctctt 48401451  T
Q  122 tcttacttgttatgataacagccagaaggtaatgatcctcgtaatggttccatgttgccgtgttt 186  Q
    |||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||    
T  48401452 tcttacttgttatgataacagccataaggtaatgatcctcataatggttccatgttgccgtgttt 48401516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 29 - 89
Target Start/End: Complemental strand, 38397540 - 38397480
Alignment:
Q  29 gatcatagcatccgacctaacaatttcaacattttactagttgaattaggacttctgaata 89  Q
    |||||| |||||||| ||||||||||||||||||||| | ||||| |||||||||||||||    
T  38397540 gatcattgcatccgatctaacaatttcaacattttaccaattgaactaggacttctgaata 38397480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 23 - 88
Target Start/End: Original strand, 19563159 - 19563224
Alignment:
Q  23 aacctcgatcatagcatccgacctaacaatttcaacattttactagttgaattaggacttctgaat 88  Q
    |||| ||||||| ||||||||||||||||||||  |||||||||||||||  ||| ||||||||||    
T  19563159 aaccccgatcatggcatccgacctaacaatttcggcattttactagttgagctagaacttctgaat 19563224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 22 - 85
Target Start/End: Complemental strand, 5523858 - 5523795
Alignment:
Q  22 gaacctcgatcatagcatccgacctaacaatttcaacattttactagttgaattaggacttctg 85  Q
    ||||| || |||| |||||||||||||||||||| |||||||| ||||||| | ||||||||||    
T  5523858 gaaccccggtcatggcatccgacctaacaatttcgacattttattagttgagtcaggacttctg 5523795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 22 - 85
Target Start/End: Complemental strand, 29151648 - 29151585
Alignment:
Q  22 gaacctcgatcatagcatccgacctaacaatttcaacattttactagttgaattaggacttctg 85  Q
    ||||| ||||||||||||||| ||||||||||||| |||||| | ||||||  |||||||||||    
T  29151648 gaaccccgatcatagcatccggcctaacaatttcagcattttgccagttgagctaggacttctg 29151585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 22 - 85
Target Start/End: Original strand, 37117908 - 37117971
Alignment:
Q  22 gaacctcgatcatagcatccgacctaacaatttcaacattttactagttgaattaggacttctg 85  Q
    ||||| ||||||| ||||||||||||||||||||||||||||   ||||||  |||||||||||    
T  37117908 gaaccccgatcatggcatccgacctaacaatttcaacattttgtcagttgagctaggacttctg 37117971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 22 - 85
Target Start/End: Original strand, 40857403 - 40857466
Alignment:
Q  22 gaacctcgatcatagcatccgacctaacaatttcaacattttactagttgaattaggacttctg 85  Q
    ||||| ||||||| |||||||||||||||||||| ||||||||| | ||||  |||||||||||    
T  40857403 gaaccccgatcatggcatccgacctaacaatttcgacattttaccatttgagctaggacttctg 40857466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 37 - 90
Target Start/End: Complemental strand, 41780313 - 41780260
Alignment:
Q  37 catccgacctaacaatttcaacattttactagttgaattaggacttctgaatat 90  Q
    ||||| ||||||||||||| ||||||| |||||||| |||||||||||| ||||    
T  41780313 catccaacctaacaatttcgacattttgctagttgagttaggacttctggatat 41780260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 30 - 89
Target Start/End: Complemental strand, 24382648 - 24382589
Alignment:
Q  30 atcatagcatccgacctaacaatttcaacattttactagttgaattaggacttctgaata 89  Q
    ||||||||||||||||||||||||||   ||||||| ||||||  ||| |||||||||||    
T  24382648 atcatagcatccgacctaacaatttcggtattttaccagttgagctagaacttctgaata 24382589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 88
Target Start/End: Complemental strand, 4227399 - 4227333
Alignment:
Q  22 gaacctcgatcatagcatccgacctaacaatttcaacattttactagttgaattaggacttctgaat 88  Q
    ||||| ||||||| ||||||||||||||||||||   |||||||  |||||  ||||||||||||||    
T  4227399 gaaccccgatcatggcatccgacctaacaatttcggtattttaccggttgatctaggacttctgaat 4227333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 85
Target Start/End: Complemental strand, 23138705 - 23138651
Alignment:
Q  31 tcatagcatccgacctaacaatttcaacattttactagttgaattaggacttctg 85  Q
    ||||| |||||||||||||||||||| |||||||| |||| |  |||||||||||    
T  23138705 tcataacatccgacctaacaatttcagcattttaccagttaagctaggacttctg 23138651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 88
Target Start/End: Complemental strand, 38261066 - 38261000
Alignment:
Q  22 gaacctcgatcatagcatccgacctaacaatttcaacattttactagttgaattaggacttctgaat 88  Q
    |||||||| |||| ||||||| |||||||||||| |||||||   ||||||  ||||||||||||||    
T  38261066 gaacctcggtcatggcatccggcctaacaatttcgacattttgtcagttgagctaggacttctgaat 38261000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 22 - 95
Target Start/End: Original strand, 1573904 - 1573977
Alignment:
Q  22 gaacctcgatcatagcatccgacctaacaatttcaacattttactagttgaattaggacttctgaatataatga 95  Q
    ||||| || |||| ||||||| ||||||||||||  |||||||| ||||||  ||||||||||| ||| |||||    
T  1573904 gaaccccggtcatggcatccggcctaacaatttcggcattttaccagttgagctaggacttctggataaaatga 1573977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 82
Target Start/End: Original strand, 22752897 - 22752957
Alignment:
Q  22 gaacctcgatcatagcatccgacctaacaatttcaacattttactagttgaattaggactt 82  Q
    ||||| ||||||||||||||| ||| |||||||| | ||||| ||||||||  ||||||||    
T  22752897 gaaccccgatcatagcatccggccttacaatttcgatatttttctagttgagctaggactt 22752957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 82
Target Start/End: Original strand, 24829128 - 24829187
Alignment:
Q  22 gaacctcgatcatagcatccgacctaacaatttcaacattttactagttgaattaggactt 82  Q
    ||||| ||||||| |||||||||||||||||||| |||||||||  ||||| |||| ||||    
T  24829128 gaaccccgatcat-gcatccgacctaacaatttcgacattttacccgttgatttagaactt 24829187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.00000000000007; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 22 - 85
Target Start/End: Complemental strand, 41562507 - 41562444
Alignment:
Q  22 gaacctcgatcatagcatccgacctaacaatttcaacattttactagttgaattaggacttctg 85  Q
    ||||| ||||||||||||||| |||||||||||| ||||||||| ||||||  |||||||||||    
T  41562507 gaaccccgatcatagcatccggcctaacaatttcgacattttaccagttgagctaggacttctg 41562444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 22 - 85
Target Start/End: Complemental strand, 16395438 - 16395375
Alignment:
Q  22 gaacctcgatcatagcatccgacctaacaatttcaacattttactagttgaattaggacttctg 85  Q
    ||||| || |||||| ||||| ||||||||||||| |||||||| |||||| ||||||||||||    
T  16395438 gaaccccggtcatagtatccggcctaacaatttcagcattttaccagttgagttaggacttctg 16395375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 22 - 88
Target Start/End: Complemental strand, 25893916 - 25893850
Alignment:
Q  22 gaacctcgatcatagcatccgacctaacaatttcaacattttactagttgaattaggacttctgaat 88  Q
    ||||| ||||||| ||||||| ||||||||||||| |||||| | ||||||  ||||||||||||||    
T  25893916 gaaccccgatcatggcatccggcctaacaatttcagcattttgccagttgagctaggacttctgaat 25893850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 23 - 89
Target Start/End: Original strand, 34540128 - 34540194
Alignment:
Q  23 aacctcgatcatagcatccgacctaacaatttcaacattttactagttgaattaggacttctgaata 89  Q
    |||| ||||||| ||||||| ||||||||||||  |||||| | ||||||| |||||||||||||||    
T  34540128 aaccccgatcatggcatccggcctaacaatttcggcattttgccagttgaactaggacttctgaata 34540194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 22 - 63
Target Start/End: Complemental strand, 1766773 - 1766732
Alignment:
Q  22 gaacctcgatcatagcatccgacctaacaatttcaacatttt 63  Q
    |||||||| ||| |||||||||||||||||||||||||||||    
T  1766773 gaacctcggtcacagcatccgacctaacaatttcaacatttt 1766732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 22 - 63
Target Start/End: Complemental strand, 14258369 - 14258328
Alignment:
Q  22 gaacctcgatcatagcatccgacctaacaatttcaacatttt 63  Q
    ||||| || |||||||||||||||||||||||||||||||||    
T  14258369 gaaccccggtcatagcatccgacctaacaatttcaacatttt 14258328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 31 - 90
Target Start/End: Complemental strand, 25199102 - 25199043
Alignment:
Q  31 tcatagcatccgacctaacaatttcaacattttactagttgaattaggacttctgaatat 90  Q
    |||||||||||| ||||||||||||  |||||||| ||||||  ||||||||||| ||||    
T  25199102 tcatagcatccggcctaacaatttcggcattttaccagttgagctaggacttctggatat 25199043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 22 - 85
Target Start/End: Original strand, 31639165 - 31639228
Alignment:
Q  22 gaacctcgatcatagcatccgacctaacaatttcaacattttactagttgaattaggacttctg 85  Q
    ||||| || |||| ||||||| ||||||||||||  |||||| |||||||| ||||||||||||    
T  31639165 gaaccccggtcatggcatccggcctaacaatttcggcattttgctagttgagttaggacttctg 31639228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 22 - 85
Target Start/End: Complemental strand, 43820933 - 43820870
Alignment:
Q  22 gaacctcgatcatagcatccgacctaacaatttcaacattttactagttgaattaggacttctg 85  Q
    ||||| ||||||| ||||||| ||||||||||||  |||||| | |||||| ||||||||||||    
T  43820933 gaaccccgatcatggcatccggcctaacaatttcggcattttgccagttgagttaggacttctg 43820870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 64
Target Start/End: Complemental strand, 20993602 - 20993560
Alignment:
Q  22 gaacctcgatcatagcatccgacctaacaatttcaacatttta 64  Q
    ||||| ||||||||||||||| |||||||||||| ||||||||    
T  20993602 gaaccccgatcatagcatccggcctaacaatttcgacatttta 20993560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 72
Target Start/End: Complemental strand, 35222338 - 35222288
Alignment:
Q  22 gaacctcgatcatagcatccgacctaacaatttcaacattttactagttga 72  Q
    |||||||| |||| | |||||||||||||||||| ||||||||| ||||||    
T  35222338 gaacctcggtcatggtatccgacctaacaatttcgacattttaccagttga 35222288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 31 - 72
Target Start/End: Original strand, 5682295 - 5682336
Alignment:
Q  31 tcatagcatccgacctaacaatttcaacattttactagttga 72  Q
    ||||| |||||| |||||||||||||||||||| ||||||||    
T  5682295 tcataacatccggcctaacaatttcaacattttgctagttga 5682336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 22 - 91
Target Start/End: Original strand, 7772113 - 7772182
Alignment:
Q  22 gaacctcgatcatagcatccgacctaacaatttcaacattttactagttgaattaggacttctgaatata 91  Q
    ||||| |||||||  |||||| ||||||||||||  |||||||| ||||||  ||||||||||| |||||    
T  7772113 gaaccccgatcatgacatccggcctaacaatttcggcattttaccagttgagctaggacttctggatata 7772182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 6 - 63
Target Start/End: Original strand, 12965265 - 12965322
Alignment:
Q  6 ggaggagcagagatatgaacctcgatcatagcatccgacctaacaatttcaacatttt 63  Q
    |||||||| ||||| |||||  |||||| |||||| |||||||||||||||| |||||    
T  12965265 ggaggagctgagatttgaactccgatcacagcatctgacctaacaatttcaatatttt 12965322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 82
Target Start/End: Original strand, 5895858 - 5895918
Alignment:
Q  22 gaacctcgatcatagcatccgacctaacaatttcaacattttactagttgaattaggactt 82  Q
    ||||| |||||||||||| || |||||||||||| ||||||| | ||||||  ||||||||    
T  5895858 gaaccccgatcatagcattcggcctaacaatttcgacattttgccagttgagctaggactt 5895918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 82
Target Start/End: Complemental strand, 37953840 - 37953788
Alignment:
Q  30 atcatagcatccgacctaacaatttcaacattttactagttgaattaggactt 82  Q
    ||||||||||||| |||||||||||| ||||||| | ||||||  ||||||||    
T  37953840 atcatagcatccggcctaacaatttcgacatttttccagttgagctaggactt 37953788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 82
Target Start/End: Complemental strand, 42650225 - 42650173
Alignment:
Q  30 atcatagcatccgacctaacaatttcaacattttactagttgaattaggactt 82  Q
    ||||| ||||||||||||||||||||  ||||||||  ||||| |||||||||    
T  42650225 atcatggcatccgacctaacaatttcggcattttaccggttgagttaggactt 42650173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.00000000000007; HSPs: 22)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 22 - 89
Target Start/End: Original strand, 10070750 - 10070817
Alignment:
Q  22 gaacctcgatcatagcatccgacctaacaatttcaacattttactagttgaattaggacttctgaata 89  Q
    |||||||  |||| ||||||||||||||||||||| |||||||| ||||||  |||||||||||||||    
T  10070750 gaacctcagtcatggcatccgacctaacaatttcagcattttaccagttgagctaggacttctgaata 10070817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 22 - 82
Target Start/End: Complemental strand, 9068868 - 9068808
Alignment:
Q  22 gaacctcgatcatagcatccgacctaacaatttcaacattttactagttgaattaggactt 82  Q
    ||||| ||||||| |||||||||||||||||||| ||||||||| ||||||  ||||||||    
T  9068868 gaaccccgatcatggcatccgacctaacaatttcgacattttaccagttgagctaggactt 9068808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 35 - 90
Target Start/End: Original strand, 19836163 - 19836218
Alignment:
Q  35 agcatccgacctaacaatttcaacattttactagttgaattaggacttctgaatat 90  Q
    ||||||||||||||||||||| ||||||| | ||||||  ||||||||||||||||    
T  19836163 agcatccgacctaacaatttcgacattttgccagttgagctaggacttctgaatat 19836218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 22 - 88
Target Start/End: Complemental strand, 10458791 - 10458725
Alignment:
Q  22 gaacctcgatcatagcatccgacctaacaatttcaacattttactagttgaattaggacttctgaat 88  Q
    ||||| ||||||||||||||| |||||||||||   |||||||| | |||| |||||||||||||||    
T  10458791 gaaccccgatcatagcatccggcctaacaattttggcattttaccaattgagttaggacttctgaat 10458725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 31 - 92
Target Start/End: Complemental strand, 32466625 - 32466564
Alignment:
Q  31 tcatagcatccgacctaacaatttcaacattttactagttgaattaggacttctgaatataa 92  Q
    |||||||||||| ||||| |||||| ||||||||  ||||||| ||||||||||| ||||||    
T  32466625 tcatagcatccggcctaataatttcgacattttatcagttgaactaggacttctggatataa 32466564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 22 - 85
Target Start/End: Original strand, 671122 - 671185
Alignment:
Q  22 gaacctcgatcatagcatccgacctaacaatttcaacattttactagttgaattaggacttctg 85  Q
    ||||| |||||||  |||||||||||||||||||  |||||| | ||||||| |||||||||||    
T  671122 gaaccccgatcatgacatccgacctaacaatttcggcattttgccagttgaactaggacttctg 671185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 22 - 85
Target Start/End: Original strand, 4617829 - 4617892
Alignment:
Q  22 gaacctcgatcatagcatccgacctaacaatttcaacattttactagttgaattaggacttctg 85  Q
    ||||| || |||| ||||||| |||||||||||| ||||||||| ||||||  |||||||||||    
T  4617829 gaaccccggtcatggcatccggcctaacaatttcgacattttaccagttgagctaggacttctg 4617892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 22 - 85
Target Start/End: Original strand, 9902564 - 9902627
Alignment:
Q  22 gaacctcgatcatagcatccgacctaacaatttcaacattttactagttgaattaggacttctg 85  Q
    ||||| ||||||||||||||| ||||||||||||  |||||| | ||||||  |||||||||||    
T  9902564 gaaccccgatcatagcatccggcctaacaatttcggcattttgccagttgagctaggacttctg 9902627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 22 - 85
Target Start/End: Complemental strand, 16496665 - 16496602
Alignment:
Q  22 gaacctcgatcatagcatccgacctaacaatttcaacattttactagttgaattaggacttctg 85  Q
    ||||| || |||| ||||||| |||||||||||| ||||||| | ||||||| |||||||||||    
T  16496665 gaaccccggtcatggcatccggcctaacaatttcgacattttgccagttgaactaggacttctg 16496602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 31 - 90
Target Start/End: Original strand, 24652386 - 24652445
Alignment:
Q  31 tcatagcatccgacctaacaatttcaacattttactagttgaattaggacttctgaatat 90  Q
    |||| ||||||| |||||||||||| ||||||| | |||||| |||||||||||| ||||    
T  24652386 tcatggcatccggcctaacaatttcgacattttgccagttgagttaggacttctggatat 24652445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 22 - 85
Target Start/End: Original strand, 39150989 - 39151052
Alignment:
Q  22 gaacctcgatcatagcatccgacctaacaatttcaacattttactagttgaattaggacttctg 85  Q
    ||||| || |||| ||||||| |||||||||||| ||||||||| ||||||  |||||||||||    
T  39150989 gaaccccggtcatggcatccggcctaacaatttcgacattttaccagttgagctaggacttctg 39151052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 84
Target Start/End: Original strand, 972666 - 972720
Alignment:
Q  31 tcatagcatccgacctaacaatttcaacattttact-agttgaattaggacttct 84  Q
    ||||||||||||||||||||||||| |||||||  | ||||||| ||||||||||    
T  972666 tcatagcatccgacctaacaatttcgacatttttgtcagttgaactaggacttct 972720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 85
Target Start/End: Original strand, 6041916 - 6041970
Alignment:
Q  31 tcatagcatccgacctaacaatttcaacattttactagttgaattaggacttctg 85  Q
    |||||||||||| ||||| |||||| ||||||||| ||||||  |||||||||||    
T  6041916 tcatagcatccggcctaataatttcgacattttaccagttgagctaggacttctg 6041970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 82
Target Start/End: Complemental strand, 10011529 - 10011475
Alignment:
Q  28 cgatcatagcatccgacctaacaatttcaacattttactagttgaattaggactt 82  Q
    ||||||| |||||||||||||||||||| |||||||||  |||||  ||||||||    
T  10011529 cgatcatggcatccgacctaacaatttcgacattttaccggttgagctaggactt 10011475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 84
Target Start/End: Complemental strand, 37940983 - 37940921
Alignment:
Q  22 gaacctcgatcatagcatccgacctaacaatttcaacattttactagttgaattaggacttct 84  Q
    ||||| ||||||| ||||||| |||||||||||| ||||||| | ||||||  ||||||||||    
T  37940983 gaaccccgatcatggcatccggcctaacaatttcgacattttgccagttgagctaggacttct 37940921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 88
Target Start/End: Complemental strand, 39527997 - 39527931
Alignment:
Q  22 gaacctcgatcatagcatccgacctaacaatttcaacattttactagttgaattaggacttctgaat 88  Q
    ||||| || |||| ||||||  ||||||||||||  |||||||| ||||||| ||||||||||||||    
T  39527997 gaaccccggtcatggcatccagcctaacaatttcggcattttaccagttgaactaggacttctgaat 39527931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 84
Target Start/End: Original strand, 43150229 - 43150283
Alignment:
Q  30 atcatagcatccgacctaacaatttcaacattttactagttgaattaggacttct 84  Q
    ||||||||||||| ||||||||||||  |||||| | |||||| |||||||||||    
T  43150229 atcatagcatccggcctaacaatttcgccattttgccagttgagttaggacttct 43150283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 22 - 83
Target Start/End: Original strand, 2025744 - 2025805
Alignment:
Q  22 gaacctcgatcatagcatccgacctaacaatttcaacattttactagttgaattaggacttc 83  Q
    ||||| |||||||  |||||||||||||||||||  |||||||  |||||| ||||||||||    
T  2025744 gaaccccgatcatgacatccgacctaacaatttccgcattttatcagttgagttaggacttc 2025805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 22 - 63
Target Start/End: Original strand, 15067203 - 15067244
Alignment:
Q  22 gaacctcgatcatagcatccgacctaacaatttcaacatttt 63  Q
    ||||| ||||||||||||||| |||||||||||| |||||||    
T  15067203 gaaccccgatcatagcatccggcctaacaatttcgacatttt 15067244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 22 - 87
Target Start/End: Complemental strand, 21067502 - 21067437
Alignment:
Q  22 gaacctcgatcatagcatccgacctaacaatttcaacattttactagttgaattaggacttctgaa 87  Q
    |||||||  ||| ||| ||||||||||||||||| | ||||||| ||||||  |||||||||||||    
T  21067502 gaacctccgtcaaagcgtccgacctaacaatttcgatattttaccagttgagctaggacttctgaa 21067437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 88
Target Start/End: Original strand, 12819626 - 12819674
Alignment:
Q  40 ccgacctaacaatttcaacattttactagttgaattaggacttctgaat 88  Q
    ||||||||||||||||  |||||||| | |||| |||||||||||||||    
T  12819626 ccgacctaacaatttcggcattttaccaattgagttaggacttctgaat 12819674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 90
Target Start/End: Original strand, 23219183 - 23219251
Alignment:
Q  22 gaacctcgatcatagcatccgacctaacaatttcaacattttactagttgaattaggacttctgaatat 90  Q
    ||||| ||||||| |||| || |||||||||||   |||||||| |||||| |||||||||||| ||||    
T  23219183 gaaccccgatcatggcatacggcctaacaattttggcattttaccagttgagttaggacttctgcatat 23219251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.00000000000007; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 21 - 72
Target Start/End: Original strand, 43500205 - 43500256
Alignment:
Q  21 tgaacctcgatcatagcatccgacctaacaatttcaacattttactagttga 72  Q
    |||||| |||||||||||||||||||||||||||| ||||||||| ||||||    
T  43500205 tgaaccccgatcatagcatccgacctaacaatttcgacattttaccagttga 43500256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 22 - 89
Target Start/End: Complemental strand, 11403234 - 11403167
Alignment:
Q  22 gaacctcgatcatagcatccgacctaacaatttcaacattttactagttgaattaggacttctgaata 89  Q
    ||||| ||||||| ||||||||||||||||||||  |||||| | ||||||  |||||||||||||||    
T  11403234 gaaccccgatcatggcatccgacctaacaatttcggcattttcccagttgagctaggacttctgaata 11403167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 22 - 72
Target Start/End: Complemental strand, 13948169 - 13948119
Alignment:
Q  22 gaacctcgatcatagcatccgacctaacaatttcaacattttactagttga 72  Q
    ||||| ||||||||||||| |||||||||||||| | ||||||||||||||    
T  13948169 gaaccccgatcatagcatctgacctaacaatttcgatattttactagttga 13948119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 29 - 82
Target Start/End: Complemental strand, 46851022 - 46850969
Alignment:
Q  29 gatcatagcatccgacctaacaatttcaacattttactagttgaattaggactt 82  Q
    |||||| |||||||||||||||||||| ||||||| ||||||||| || |||||    
T  46851022 gatcatggcatccgacctaacaatttcgacattttgctagttgaactatgactt 46850969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 82
Target Start/End: Complemental strand, 36586316 - 36586256
Alignment:
Q  22 gaacctcgatcatagcatccgacctaacaatttcaacattttactagttgaattaggactt 82  Q
    ||||| ||||||  ||||||| |||||||||||| ||||||||| |||||| |||||||||    
T  36586316 gaaccccgatcacggcatccggcctaacaatttcgacattttaccagttgagttaggactt 36586256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 22 - 89
Target Start/End: Original strand, 15331125 - 15331192
Alignment:
Q  22 gaacctcgatcatagcatccgacctaacaatttcaacattttactagttgaattaggacttctgaata 89  Q
    |||||||| |||| ||||||||||||||||||||  |||||| | ||||||  |||||||| ||||||    
T  15331125 gaacctcggtcatggcatccgacctaacaatttcggcatttttccagttgagctaggacttatgaata 15331192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 90
Target Start/End: Complemental strand, 30455263 - 30455201
Alignment:
Q  28 cgatcatagcatccgacctaacaatttcaacattttactagttgaattaggacttctgaatat 90  Q
    ||||||| ||||||| |||||||||||| ||||||||  ||||||  ||||||||||| ||||    
T  30455263 cgatcatggcatccggcctaacaatttcgacattttatcagttgagctaggacttctggatat 30455201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 95
Target Start/End: Complemental strand, 40685579 - 40685521
Alignment:
Q  37 catccgacctaacaatttcaacattttactagttgaattaggacttctgaatataatga 95  Q
    ||||||||||||||||||| ||||||| | ||||||  ||||||||||| ||| |||||    
T  40685579 catccgacctaacaatttcgacattttgccagttgagctaggacttctggatacaatga 40685521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 38 - 91
Target Start/End: Original strand, 19279931 - 19279984
Alignment:
Q  38 atccgacctaacaatttcaacattttactagttgaattaggacttctgaatata 91  Q
    ||||||||||||||||||  |||||||| ||||||  ||||||||||| |||||    
T  19279931 atccgacctaacaatttcggcattttaccagttgagctaggacttctggatata 19279984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 65
Target Start/End: Complemental strand, 14191788 - 14191752
Alignment:
Q  29 gatcatagcatccgacctaacaatttcaacattttac 65  Q
    ||||||| |||||||||||||||||| ||||||||||    
T  14191788 gatcataacatccgacctaacaattttaacattttac 14191752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 90
Target Start/End: Complemental strand, 40241537 - 40241485
Alignment:
Q  38 atccgacctaacaatttcaacattttactagttgaattaggacttctgaatat 90  Q
    ||||| |||||||||||| ||||||||  |||||| ||||||||| |||||||    
T  40241537 atccggcctaacaatttcgacattttatcagttgagttaggacttatgaatat 40241485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000001; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 37 - 90
Target Start/End: Original strand, 23383134 - 23383187
Alignment:
Q  37 catccgacctaacaatttcaacattttactagttgaattaggacttctgaatat 90  Q
    |||| ||||||||||||||| |||||| ||||||||| ||||||||||||||||    
T  23383134 catctgacctaacaatttcagcattttgctagttgaactaggacttctgaatat 23383187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 22 - 84
Target Start/End: Complemental strand, 2959058 - 2958996
Alignment:
Q  22 gaacctcgatcatagcatccgacctaacaatttcaacattttactagttgaattaggacttct 84  Q
    ||||| || |||| ||||||| |||||||||||| ||||||||| ||||||||||| ||||||    
T  2959058 gaaccccggtcatggcatccggcctaacaatttcgacattttaccagttgaattagaacttct 2958996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 22 - 89
Target Start/End: Original strand, 2395620 - 2395687
Alignment:
Q  22 gaacctcgatcatagcatccgacctaacaatttcaacattttactagttgaattaggacttctgaata 89  Q
    ||||| || |||| ||||||||||||||||||||   ||||| ||||||||  |||||||||||||||    
T  2395620 gaaccccggtcatggcatccgacctaacaatttcgttattttgctagttgacctaggacttctgaata 2395687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 37 - 88
Target Start/End: Original strand, 12795097 - 12795148
Alignment:
Q  37 catccgacctaacaatttcaacattttactagttgaattaggacttctgaat 88  Q
    |||||| ||||||||||||  |||||||||||||||  ||||||||||||||    
T  12795097 catccggcctaacaatttcggcattttactagttgagctaggacttctgaat 12795148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 30 - 85
Target Start/End: Complemental strand, 15640574 - 15640519
Alignment:
Q  30 atcatagcatccgacctaacaatttcaacattttactagttgaattaggacttctg 85  Q
    |||||| |||||||||||||||||| |||||||||| ||||||  || ||||||||    
T  15640574 atcatatcatccgacctaacaattttaacattttaccagttgagctatgacttctg 15640519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 22 - 85
Target Start/End: Original strand, 28594134 - 28594197
Alignment:
Q  22 gaacctcgatcatagcatccgacctaacaatttcaacattttactagttgaattaggacttctg 85  Q
    ||||| ||||||| ||||||| |||||||||||| || |||| | |||||| ||||||||||||    
T  28594134 gaaccccgatcatggcatccggcctaacaatttcgaccttttgccagttgagttaggacttctg 28594197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 22 - 85
Target Start/End: Original strand, 32643791 - 32643854
Alignment:
Q  22 gaacctcgatcatagcatccgacctaacaatttcaacattttactagttgaattaggacttctg 85  Q
    ||||| || |||| ||||||| ||||||||||||  |||||||| |||||| ||||||||||||    
T  32643791 gaaccccggtcatggcatccggcctaacaatttcggcattttaccagttgagttaggacttctg 32643854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 85
Target Start/End: Complemental strand, 7098862 - 7098808
Alignment:
Q  31 tcatagcatccgacctaacaatttcaacattttactagttgaattaggacttctg 85  Q
    |||| ||||||| |||||||||||| ||||||||| ||||||  |||||||||||    
T  7098862 tcatggcatccggcctaacaatttcgacattttaccagttgagctaggacttctg 7098808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 92
Target Start/End: Original strand, 31205246 - 31205316
Alignment:
Q  22 gaacctcgatcatagcatccgacctaacaatttcaacattttactagttgaattaggacttctgaatataa 92  Q
    ||||| ||||||| ||||||| ||||||||||||  |||||| | ||||||  ||||||||||| ||||||    
T  31205246 gaaccccgatcatggcatccggcctaacaatttcggcattttgccagttgagctaggacttctggatataa 31205316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 30 - 91
Target Start/End: Complemental strand, 4480531 - 4480470
Alignment:
Q  30 atcatagcatccgacctaacaatttcaacattttactagttgaattaggacttctgaatata 91  Q
    ||||| ||||||| ||||||||||||  |||||| | |||||| |||||||||||| |||||    
T  4480531 atcatggcatccggcctaacaatttcggcattttgccagttgagttaggacttctggatata 4480470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 63
Target Start/End: Complemental strand, 22721315 - 22721275
Alignment:
Q  23 aacctcgatcatagcatccgacctaacaatttcaacatttt 63  Q
    |||| ||||||||| ||||| ||||||||||||||||||||    
T  22721315 aaccccgatcatagtatccggcctaacaatttcaacatttt 22721275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 90
Target Start/End: Original strand, 31747049 - 31747117
Alignment:
Q  22 gaacctcgatcatagcatccgacctaacaatttcaacattttactagttgaattaggacttctgaatat 90  Q
    ||||| ||||||| ||||||| ||||||||||||  |||||||| ||||||  || || ||||||||||    
T  31747049 gaaccccgatcatggcatccggcctaacaatttcggcattttaccagttgagctaagatttctgaatat 31747117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 23 - 88
Target Start/End: Complemental strand, 54864460 - 54864395
Alignment:
Q  23 aacctcgatcatagcatccgacctaacaatttcaacattttactagttgaattaggacttctgaat 88  Q
    |||| ||||||| |||||||||||||||||||  ||||||| ||||||||  ||||||||||||||    
T  54864460 aaccccgatcatggcatccgacctaacaattttgacattttgctagttgatctaggacttctgaat 54864395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 22 - 84
Target Start/End: Original strand, 28187227 - 28187289
Alignment:
Q  22 gaacctcgatcatagcatccgacctaacaatttcaacattttactagttgaattaggacttct 84  Q
    ||||| ||||||||||||||| |||||||||||| ||||||||  ||||||  ||||||||||    
T  28187227 gaaccccgatcatagcatccggcctaacaatttcgacattttatcagttgagctaggacttct 28187289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 28 - 64
Target Start/End: Complemental strand, 2402301 - 2402265
Alignment:
Q  28 cgatcatagcatccgacctaacaatttcaacatttta 64  Q
    ||||||||||||| |||||||||||||||||||||||    
T  2402301 cgatcatagcatctgacctaacaatttcaacatttta 2402265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 82
Target Start/End: Original strand, 9064852 - 9064912
Alignment:
Q  22 gaacctcgatcatagcatccgacctaacaatttcaacattttactagttgaattaggactt 82  Q
    ||||| |||| || |||| |||||||||||||||| |||||||||||||||  ||||||||    
T  9064852 gaaccccgattatggcattcgacctaacaatttcagcattttactagttgagctaggactt 9064912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 32 - 84
Target Start/End: Original strand, 36751973 - 36752025
Alignment:
Q  32 catagcatccgacctaacaatttcaacattttactagttgaattaggacttct 84  Q
    ||||||||||||||||| ||||||| | |||||| ||||||| ||||||||||    
T  36751973 catagcatccgacctaataatttcagcgttttaccagttgaactaggacttct 36752025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 22 - 85
Target Start/End: Original strand, 3084305 - 3084368
Alignment:
Q  22 gaacctcgatcatagcatccgacctaacaatttcaacattttactagttgaattaggacttctg 85  Q
    ||||| ||||||| ||||||||||||||||||||  |||||| | ||||||  |||||||||||    
T  3084305 gaaccccgatcatggcatccgacctaacaatttcggcattttgccagttgagctaggacttctg 3084368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 22 - 85
Target Start/End: Complemental strand, 42116546 - 42116483
Alignment:
Q  22 gaacctcgatcatagcatccgacctaacaatttcaacattttactagttgaattaggacttctg 85  Q
    ||||| ||||||| ||||||||||||| |||||| ||||||||| ||||||  |||| ||||||    
T  42116546 gaaccccgatcatggcatccgacctaaaaatttcgacattttaccagttgagctagggcttctg 42116483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 37 - 88
Target Start/End: Complemental strand, 51425380 - 51425329
Alignment:
Q  37 catccgacctaacaatttcaacattttactagttgaattaggacttctgaat 88  Q
    |||||| ||||||||||||  |||||| ||||||||| ||||||||||||||    
T  51425380 catccggcctaacaatttcggcattttgctagttgaactaggacttctgaat 51425329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 84
Target Start/End: Complemental strand, 41323591 - 41323537
Alignment:
Q  30 atcatagcatccgacctaacaatttcaacattttactagttgaattaggacttct 84  Q
    |||||||||||||| ||||||||||| ||||||||  |||||| |||| ||||||    
T  41323591 atcatagcatccgatctaacaatttcgacattttatcagttgagttagaacttct 41323537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 22 - 87
Target Start/End: Complemental strand, 13218262 - 13218197
Alignment:
Q  22 gaacctcgatcatagcatccgacctaacaatttcaacattttactagttgaattaggacttctgaa 87  Q
    ||||| ||||||| |||||||||||||||||||  ||||||| | |||| || ||||| |||||||    
T  13218262 gaaccccgatcatggcatccgacctaacaattttgacatttttccagttaaactaggatttctgaa 13218197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 23 - 84
Target Start/End: Original strand, 54907956 - 54908017
Alignment:
Q  23 aacctcgatcatagcatccgacctaacaatttcaacattttactagttgaattaggacttct 84  Q
    |||||||||||| ||||||| ||||||||||||  |||||| | ||||||  ||||||||||    
T  54907956 aacctcgatcatggcatccggcctaacaatttcggcattttgccagttgagctaggacttct 54908017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 86
Target Start/End: Original strand, 5880349 - 5880413
Alignment:
Q  22 gaacctcgatcatagcatccgacctaacaatttcaacattttactagttgaattaggacttctga 86  Q
    ||||| || |||| |||||||  ||||||||||| ||||||| | |||||| |||||||||||||    
T  5880349 gaaccccggtcatggcatccggtctaacaatttcgacattttgccagttgagttaggacttctga 5880413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 85
Target Start/End: Complemental strand, 13389070 - 13389022
Alignment:
Q  37 catccgacctaacaatttcaacattttactagttgaattaggacttctg 85  Q
    |||||||||||||||||||| |||||| | ||||||  |||||||||||    
T  13389070 catccgacctaacaatttcagcattttgccagttgagctaggacttctg 13389022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 90
Target Start/End: Complemental strand, 35828339 - 35828271
Alignment:
Q  22 gaacctcgatcatagcatccgacctaacaatttcaacattttactagttgaattaggacttctgaatat 90  Q
    ||||| || |||| ||||||| ||||||||||||  |||||| | ||||||  ||||||||||||||||    
T  35828339 gaaccccggtcatggcatccggcctaacaatttcggcattttgccagttgagctaggacttctgaatat 35828271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 23 - 84
Target Start/End: Original strand, 23525970 - 23526031
Alignment:
Q  23 aacctcgatcatagcatccgacctaacaatttcaacattttactagttgaattaggacttct 84  Q
    |||| |||||||||||||||||||||||||||  ||||||||| | ||||| ||||||||||    
T  23525970 aaccccgatcatagcatccgacctaacaattttgacattttaccaattgaactaggacttct 23526031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 31 - 88
Target Start/End: Original strand, 46311515 - 46311572
Alignment:
Q  31 tcatagcatccgacctaacaatttcaacattttactagttgaattaggacttctgaat 88  Q
    |||||||||||| |||||||||||| ||||||||| ||||||  ||||||||||||||    
T  46311515 tcatagcatccggcctaacaatttcgacattttaccagttgagctaggacttctgaat 46311572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 22 - 90
Target Start/End: Complemental strand, 32591037 - 32590969
Alignment:
Q  22 gaacctcgatcatagcatccgacctaacaatttcaacattttactagttgaattaggacttctgaatat 90  Q
    ||||| ||||||| ||||||| |||||||||||| ||||||||| ||||||  ||||||||||| ||||    
T  32591037 gaaccccgatcatggcatccggcctaacaatttcgacattttaccagttgagctaggacttctggatat 32590969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 28 - 88
Target Start/End: Original strand, 50238909 - 50238969
Alignment:
Q  28 cgatcatagcatccgacctaacaatttcaacattttactagttgaattaggacttctgaat 88  Q
    ||||||| ||||||| |||||||||||| ||||||||| ||||||  ||||||||||||||    
T  50238909 cgatcatggcatccggcctaacaatttcgacattttaccagttgagctaggacttctgaat 50238969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 22 - 88
Target Start/End: Complemental strand, 12948875 - 12948809
Alignment:
Q  22 gaacctcgatcatagcatccgacctaacaatttcaacattttactagttgaattaggacttctgaat 88  Q
    ||||| ||||||| ||||||| ||||||||||||  |||||||| ||||||  ||||||||||||||    
T  12948875 gaaccccgatcatggcatccggcctaacaatttcgtcattttaccagttgagctaggacttctgaat 12948809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 82
Target Start/End: Complemental strand, 11250025 - 11249965
Alignment:
Q  22 gaacctcgatcatagcatccgacctaacaatttcaacattttactagttgaattaggactt 82  Q
    ||||| ||||||| ||||||||||||||||||||  |||||||| ||||||  ||||||||    
T  11250025 gaaccccgatcatggcatccgacctaacaatttctgcattttaccagttgagctaggactt 11249965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 22 - 85
Target Start/End: Original strand, 38127905 - 38127968
Alignment:
Q  22 gaacctcgatcatagcatccgacctaacaatttcaacattttactagttgaattaggacttctg 85  Q
    ||||| || |||||||||||| |||||||||||| ||||||| | ||||||  |||||||||||    
T  38127905 gaaccccggtcatagcatccggcctaacaatttcgacattttgccagttgagctaggacttctg 38127968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 90
Target Start/End: Original strand, 40193025 - 40193087
Alignment:
Q  28 cgatcatagcatccgacctaacaatttcaacattttactagttgaattaggacttctgaatat 90  Q
    ||||||| ||||||| |||||||||||| ||||||||| |||| |  ||||||||||| ||||    
T  40193025 cgatcatggcatccggcctaacaatttcgacattttaccagttaagctaggacttctggatat 40193087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 22 - 63
Target Start/End: Original strand, 12088345 - 12088386
Alignment:
Q  22 gaacctcgatcatagcatccgacctaacaatttcaacatttt 63  Q
    ||||| ||||||||||||||| |||||||||||| |||||||    
T  12088345 gaaccccgatcatagcatccggcctaacaatttcgacatttt 12088386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 22 - 63
Target Start/End: Complemental strand, 28731912 - 28731871
Alignment:
Q  22 gaacctcgatcatagcatccgacctaacaatttcaacatttt 63  Q
    ||||| ||||||| |||||||||||||||||||| |||||||    
T  28731912 gaaccccgatcatggcatccgacctaacaatttcgacatttt 28731871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 22 - 91
Target Start/End: Complemental strand, 40559739 - 40559670
Alignment:
Q  22 gaacctcgatcatagcatccgacctaacaatttcaacattttactagttgaattaggacttctgaatata 91  Q
    ||||| ||||||  ||||||||||||||||||||  |||||||  ||||||  ||||||||||| |||||    
T  40559739 gaaccccgatcaaggcatccgacctaacaatttcggcattttatcagttgagctaggacttctggatata 40559670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 85
Target Start/End: Complemental strand, 19961419 - 19961371
Alignment:
Q  37 catccgacctaacaatttcaacattttactagttgaattaggacttctg 85  Q
    ||||||||||||||||||| |||||||   |||||| ||||||||||||    
T  19961419 catccgacctaacaatttcgacattttgtcagttgagttaggacttctg 19961371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 85
Target Start/End: Original strand, 47410830 - 47410878
Alignment:
Q  37 catccgacctaacaatttcaacattttactagttgaattaggacttctg 85  Q
    ||||||||||||||||||| ||||||| | ||||||  |||||||||||    
T  47410830 catccgacctaacaatttcgacattttgccagttgagctaggacttctg 47410878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.000000000005; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 36 - 92
Target Start/End: Complemental strand, 11061434 - 11061378
Alignment:
Q  36 gcatccgacctaacaatttcaacattttactagttgaattaggacttctgaatataa 92  Q
    ||||||| |||||||||||| ||||||||  |||||| |||||||||||||||||||    
T  11061434 gcatccggcctaacaatttcgacattttatcagttgagttaggacttctgaatataa 11061378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 22 - 89
Target Start/End: Complemental strand, 39310431 - 39310364
Alignment:
Q  22 gaacctcgatcatagcatccgacctaacaatttcaacattttactagttgaattaggacttctgaata 89  Q
    ||||| |||||||| |||||| |||||||||||| | ||||| ||||||||  |||||||||||||||    
T  39310431 gaaccccgatcataacatccggcctaacaatttcgatattttgctagttgagctaggacttctgaata 39310364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 22 - 88
Target Start/End: Original strand, 43461397 - 43461463
Alignment:
Q  22 gaacctcgatcatagcatccgacctaacaatttcaacattttactagttgaattaggacttctgaat 88  Q
    ||||| || |||| ||||||| |||||||||||| ||||||||| ||||||  ||||||||||||||    
T  43461397 gaaccccggtcatggcatccggcctaacaatttcgacattttaccagttgagctaggacttctgaat 43461463  T

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Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 31 - 84
Target Start/End: Complemental strand, 18779967 - 18779914
Alignment:
Q  31 tcatagcatccgacctaacaatttcaacattttactagttgaattaggacttct 84  Q
    |||| |||||||||||||||||||| ||||||||| | ||||| ||||||||||    
T  18779967 tcatggcatccgacctaacaatttcgacattttaccaattgaactaggacttct 18779914  T

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Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 82
Target Start/End: Complemental strand, 3048607 - 3048547
Alignment:
Q  22 gaacctcgatcatagcatccgacctaacaatttcaacattttactagttgaattaggactt 82  Q
    ||||| ||||||| ||||||| |||||||||||| ||||||| ||||||||  ||||||||    
T  3048607 gaaccccgatcatggcatccggcctaacaatttcgacattttgctagttgagctaggactt 3048547  T

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Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 90
Target Start/End: Original strand, 11816839 - 11816907
Alignment:
Q  22 gaacctcgatcatagcatccgacctaacaatttcaacattttactagttgaattaggacttctgaatat 90  Q
    ||||||| || |||||||||| |||||||||||| ||||||||| | ||||  ||||||||||| ||||    
T  11816839 gaacctcaataatagcatccggcctaacaatttcgacattttaccaattgagctaggacttctggatat 11816907  T

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Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 22 - 89
Target Start/End: Complemental strand, 38463204 - 38463137
Alignment:
Q  22 gaacctcgatcatagcatccgacctaacaatttcaacattttactagttgaattaggacttctgaata 89  Q
    ||||| |||||||| |||||||||||||||||||  |||||| | ||||||  || ||||||||||||    
T  38463204 gaaccccgatcataacatccgacctaacaatttcggcattttgccagttgagctaagacttctgaata 38463137  T

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Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 22 - 85
Target Start/End: Original strand, 42007278 - 42007341
Alignment:
Q  22 gaacctcgatcatagcatccgacctaacaatttcaacattttactagttgaattaggacttctg 85  Q
    ||||| || |||| ||||||| |||||||||||| ||||||||| ||||||  |||||||||||    
T  42007278 gaaccccggtcatggcatccggcctaacaatttcgacattttaccagttgagctaggacttctg 42007341  T

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Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 85
Target Start/End: Complemental strand, 42211334 - 42211280
Alignment:
Q  31 tcatagcatccgacctaacaatttcaacattttactagttgaattaggacttctg 85  Q
    ||||||||| || |||||||||||| ||||||||| ||||||| || ||||||||    
T  42211334 tcatagcatgcggcctaacaatttcgacattttaccagttgaactaagacttctg 42211280  T

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Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 22 - 63
Target Start/End: Complemental strand, 10202235 - 10202194
Alignment:
Q  22 gaacctcgatcatagcatccgacctaacaatttcaacatttt 63  Q
    ||||| ||||||||||||||| |||||||||||| |||||||    
T  10202235 gaaccccgatcatagcatccggcctaacaatttcgacatttt 10202194  T

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Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 28 - 85
Target Start/End: Original strand, 16535012 - 16535069
Alignment:
Q  28 cgatcatagcatccgacctaacaatttcaacattttactagttgaattaggacttctg 85  Q
    |||||||  |||||| |||||||||||| ||||||||  ||||||| |||||||||||    
T  16535012 cgatcatgacatccggcctaacaatttcgacattttatcagttgaactaggacttctg 16535069  T

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Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 36 - 85
Target Start/End: Complemental strand, 18999380 - 18999331
Alignment:
Q  36 gcatccgacctaacaatttcaacattttactagttgaattaggacttctg 85  Q
    ||||||||||||||||||||  |||||| | |||||| ||||||||||||    
T  18999380 gcatccgacctaacaatttcggcattttgccagttgagttaggacttctg 18999331  T

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Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 31 - 88
Target Start/End: Original strand, 42133514 - 42133571
Alignment:
Q  31 tcatagcatccgacctaacaatttcaacattttactagttgaattaggacttctgaat 88  Q
    |||| ||||||||||||||||||||  |||||| | ||||||| || |||||||||||    
T  42133514 tcatggcatccgacctaacaatttcggcattttgccagttgaactaagacttctgaat 42133571  T

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Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 94
Target Start/End: Original strand, 727352 - 727424
Alignment:
Q  22 gaacctcgatcatagcatccgacctaacaatttcaacattttactagttgaattaggacttctgaatataatg 94  Q
    ||||| ||||||| ||||||||||||||||||||  ||||||   ||||||  ||||||||||| ||| ||||    
T  727352 gaaccccgatcatggcatccgacctaacaatttcggcattttgtcagttgagctaggacttctggataaaatg 727424  T

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Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 85
Target Start/End: Original strand, 8859365 - 8859413
Alignment:
Q  37 catccgacctaacaatttcaacattttactagttgaattaggacttctg 85  Q
    |||||| |||||||||||| ||||||| ||||||||| ||| |||||||    
T  8859365 catccggcctaacaatttcgacattttgctagttgaactagaacttctg 8859413  T

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Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 85
Target Start/End: Original strand, 23497590 - 23497638
Alignment:
Q  37 catccgacctaacaatttcaacattttactagttgaattaggacttctg 85  Q
    |||||| ||||||||||||  |||||||| ||||||| |||||||||||    
T  23497590 catccggcctaacaatttcggcattttaccagttgaactaggacttctg 23497638  T

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Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 85
Target Start/End: Complemental strand, 35706902 - 35706854
Alignment:
Q  37 catccgacctaacaatttcaacattttactagttgaattaggacttctg 85  Q
    ||||||||||||||||||| ||||||| | ||||||  |||||||||||    
T  35706902 catccgacctaacaatttcgacattttgccagttgagctaggacttctg 35706854  T

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Target: scaffold0122 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0122
Description:

Target: scaffold0122; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 31 - 84
Target Start/End: Original strand, 15668 - 15721
Alignment:
Q  31 tcatagcatccgacctaacaatttcaacattttactagttgaattaggacttct 84  Q
    |||| ||||||||||||||||||||  |||||| | ||||||| ||||||||||    
T  15668 tcatggcatccgacctaacaatttcggcattttgccagttgaactaggacttct 15721  T

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