View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3712_low_2 (Length: 548)
Name: NF3712_low_2
Description: NF3712
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3712_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 401; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 19 - 530
Target Start/End: Original strand, 14435381 - 14435897
Alignment:
| Q |
19 |
ctgcttgatcaagatgtaagttaatattgtagtgtttctatttcttataaacttagtacttgcggtttgttaaatggaaagttgacaccctttgttgttt |
118 |
Q |
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| T |
14435381 |
ctgcttgatcaagatgtaagttaatattgtagtgtttctatttcttataaacttagtacctgcggtttgttatatggaaagttgacaccctttgttgttt |
14435480 |
T |
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| Q |
119 |
ggaacttttttgcatggttatggcactattgcaggggactaggatccatgcaacaattcctccagactgtgttgatcgtttccagaatacttttcacgag |
218 |
Q |
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| T |
14435481 |
ggaacttttttgcatggttatggcactattgcaggggaataggatccaagcaacaattcctccagactgtgttgatcgtttccagaatacttttcatgag |
14435580 |
T |
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| Q |
219 |
aaccgtgtttacttgatctctaatttcaaggttttaccaaatgatcgttctacgagggtcacttcccataatcataggctgaaactcttggaggagactg |
318 |
Q |
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| T |
14435581 |
aaccgtgtttacatgttctctaatttcaaggttttaccaaatgatcgttctacgagggtcacttcccataatcataggctgaaactctgggaggagactg |
14435680 |
T |
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| Q |
319 |
tggttgtcaatgatgatggttatatcatccaaaggtttggtttgtccttcttttcatctgctcagatcttggaacatcaacatggatgtggtcatttaat |
418 |
Q |
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| T |
14435681 |
tggttgtcaatcatgatggttatatcatccaaaggtttggtttctccttcttttcatctgctcagatcttggaacatcaacatggatgtggtcatttaat |
14435780 |
T |
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| Q |
419 |
tggtgggttgttgttatg-----nnnnnnnnnnnnnnnngtgctgggtggttcatgaagcatatacaatatttgactgtgtgtttgtttcagatgtggtt |
513 |
Q |
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| T |
14435781 |
tggtgggttgttgttatgtttttttttttttttttttgtgtgatgggtggttcatgaagcatatacaatatttgactgtgtgtttgtttcagatgtgttt |
14435880 |
T |
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| Q |
514 |
ggtctattgacatctct |
530 |
Q |
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| T |
14435881 |
ggtctattgacatctct |
14435897 |
T |
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