View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3712_low_4 (Length: 394)
Name: NF3712_low_4
Description: NF3712
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3712_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 81 - 378
Target Start/End: Complemental strand, 33471827 - 33471534
Alignment:
| Q |
81 |
tataccataaagccttcttgaatcttaacgtgcaaaccaaaaagttttgatgttattagatgatagcacaagannnnnnnnnnnnnnnctaaggatgata |
180 |
Q |
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| T |
33471827 |
tataccataaagccttcttgaatcttaacgtgcaaaccaaaaagttttgatgttattagatgatagcacaagttttttttttttctttataaggatgata |
33471728 |
T |
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| Q |
181 |
acacacgatgatgaagggtctaatttgattaatggcataaatatgtcattttattaatttctcctttttgtgctatgaaaaacggatttggatttaacac |
280 |
Q |
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| T |
33471727 |
acacacgatga---agggtctaatttgattaatggcataaatatgtcattttattaattttccctttttgtgctatgaaaaacggatttggatttaacac |
33471631 |
T |
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| Q |
281 |
ggttactacgtcgatagaataactaccgttgaccgtcagataaaatatgtagcgtcaagatcatatagtgtgttaaactgtcaaatcaacattgaata |
378 |
Q |
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| T |
33471630 |
ggttactacgttgatagaataactactgttgaccgtcagataaaatatgaagcgtcaagatcat-tattgtgttaaactgtcaaatcaacattgaata |
33471534 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 308 - 374
Target Start/End: Complemental strand, 31744874 - 31744808
Alignment:
| Q |
308 |
gttgaccgtcagataaaatatgtagcgtcaagatcatatagtgtgttaaactgtcaaatcaacattg |
374 |
Q |
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|||| ||||| ||| ||| ||| || |||||||||||| | |||||||||| ||||||||||||||| |
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| T |
31744874 |
gttggccgtccgattaaaaatgaagggtcaagatcataaactgtgttaaacggtcaaatcaacattg |
31744808 |
T |
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