View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3712_low_8 (Length: 341)
Name: NF3712_low_8
Description: NF3712
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3712_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 18 - 332
Target Start/End: Complemental strand, 6523355 - 6523044
Alignment:
| Q |
18 |
cttctatgtttgcaattatcaagggcttgtaaaaaatacgtaagacatcatttattttagaatggagggtctttctgttgcaatagatgtcgtattacat |
117 |
Q |
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| T |
6523355 |
cttctatgtt-gcaatgatcaagggcttgtaaaaaatacctaagacatcatttattttagaatggagggtctttctgttgcaatagatgtcgtattacat |
6523257 |
T |
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| Q |
118 |
ttcttgtatagtcaagttgaaagtcaagatcaattcttttgaatgatatattatttttaatatttagattggatcaaatcaaaacaaactcaaacctaat |
217 |
Q |
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| T |
6523256 |
tttttgtatagtcaagttgaaagtcaagatcaattcttttgaatgatatattagttttaatatttagattggatcaaatcaaaaccaactcaaacctaat |
6523157 |
T |
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| Q |
218 |
actatattggtactactagtcaaattatgtcacccnnnnnnnattttgattagtcaaagtctttcttaatttcaacatattcaattgctccttcttggat |
317 |
Q |
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| T |
6523156 |
ac--tattggtactactagtcaaattatgtcaccctttttttattttgattagtcaaagtctttcttaatttcaacacattcaattgctccttcttggat |
6523059 |
T |
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| Q |
318 |
gcttgtgagtataat |
332 |
Q |
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|||||||||| |||| |
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| T |
6523058 |
gcttgtgagtgtaat |
6523044 |
T |
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