View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3712_low_9 (Length: 319)

Name: NF3712_low_9
Description: NF3712
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3712_low_9
NF3712_low_9
[»] chr1 (10 HSPs)
chr1 (13-301)||(13095186-13095474)
chr1 (13-301)||(13162308-13162596)
chr1 (13-301)||(13130615-13130903)
chr1 (56-301)||(30367268-30367510)
chr1 (23-301)||(13069318-13069593)
chr1 (133-296)||(14708221-14708384)
chr1 (23-301)||(13205246-13205521)
chr1 (131-301)||(13007975-13008145)
chr1 (228-285)||(13067510-13067567)
chr1 (216-301)||(13101775-13101860)
[»] chr6 (1 HSPs)
chr6 (56-177)||(31376409-31376527)


Alignment Details
Target: chr1 (Bit Score: 269; Significance: 1e-150; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 13 - 301
Target Start/End: Complemental strand, 13095474 - 13095186
Alignment:
Q  13 catcacaaagaagaatgttggcaactacgcgaaagggtcaaaattccatgatatttttgaagttcttggaggtagtattttcaattctgattccgacgat 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13095474 catcacaaagaagaatgttggcaactacgcgaaagggtcaaaattccatgatatttttgaagttcttggaggtagtattttcaattctgattccgacgat 13095375  T
Q  113 gtatggaaacaggagaagacaatgtttcatttaattcttggaaggaaaagattcaagaacatgttcgaacaatccattcagaagaaggtggataactacc 212  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||| |||||||    
T  13095374 gtatggaaacaggagaagacaatgtttcatttaattcttggaaggaaaagcttcaagaacatggtcgaacaatccattcagaagaaggtggagaactacc 13095275  T
Q  213 tcataccatttcttaatgatgtatctgaagcaggagctcaggtggatttgcaagatgcctttaataggttcacctttgatagcacctgc 301  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  13095274 tgataccatttcttaatgatgtatctgaagcaggagctcaggtggatttgcaagatgcctttaataggttcacctttgatagcagctgc 13095186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 13 - 301
Target Start/End: Complemental strand, 13162596 - 13162308
Alignment:
Q  13 catcacaaagaagaatgttggcaactacgcgaaagggtcaaaattccatgatatttttgaagttcttggaggtagtattttcaattctgattccgacgat 112  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  13162596 catcacaaagaagaattttggcaactacgcgaaagggtcaaaattccatgatatttttgaagttcttggaggtagtattttcaattctgattccaacgat 13162497  T
Q  113 gtatggaaacaggagaagacaatgtttcatttaattcttggaaggaaaagattcaagaacatgttcgaacaatccattcagaagaaggtggataactacc 212  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||| |||| ||||||||||||||||||||  |||| |    
T  13162496 gtatggaaacaggagaagacaatgtttcatttagttcttggaaggaaaagcttcaagaacatgttccaacattccattcagaagaaggtggacgactatc 13162397  T
Q  213 tcataccatttcttaatgatgtatctgaagcaggagctcaggtggatttgcaagatgcctttaataggttcacctttgatagcacctgc 301  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  13162396 taataccatttcttaatgatgtatctgaagcaggagctcaggtggatttgcaagatgcctttaataggttcacctttgatagcagctgc 13162308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 13 - 301
Target Start/End: Complemental strand, 13130903 - 13130615
Alignment:
Q  13 catcacaaagaagaatgttggcaactacgcgaaagggtcaaaattccatgatatttttgaagttcttggaggtagtattttcaattctgattccgacgat 112  Q
    ||||||||||||||||  ||||||||||  ||||||||||||||  ||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  13130903 catcacaaagaagaattgtggcaactacaggaaagggtcaaaatatcatgacatttttgaagttcttggaggtagtattttcaattctgattccgacgat 13130804  T
Q  113 gtatggaaacaggagaagacaatgtttcatttaattcttggaaggaaaagattcaagaacatgttcgaacaatccattcagaagaaggtggataactacc 212  Q
    ||||||||||| ||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||    
T  13130803 gtatggaaacaagagaagacaatgtttcatttagttcttggaaggaaaagcttcaagaacatgttcgaacaatccattcagaagaaggtggagaactacc 13130704  T
Q  213 tcataccatttcttaatgatgtatctgaagcaggagctcaggtggatttgcaagatgcctttaataggttcacctttgatagcacctgc 301  Q
    | |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||    
T  13130703 tgataccatttcttaatgatgtatctgaagcaggagctcatgtggatttgcaagatgcctttaataggttcacctttgatagcagctgc 13130615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 56 - 301
Target Start/End: Original strand, 30367268 - 30367510
Alignment:
Q  56 ttccatgatatttttgaagttcttggaggtagtattttcaattctgattccgacgatgtatggaaacaggagaagacaatgtttcatttaattcttggaa 155  Q
    ||||| || ||||||||| || |||||||| ||||| |||||||||||||| |||   |||||||| || ||| | |||||||||||| ||||||   ||    
T  30367268 ttccaagaaatttttgaattttttggaggtggtattgtcaattctgattcccacg---tatggaaagagaagagggcaatgtttcattcaattctcaaaa 30367364  T
Q  156 ggaaaagattcaagaacatgttcgaacaatccattcagaagaaggtggataactacctcataccatttcttaatgatgtatctgaagcaggagctcaggt 255  Q
    ||||||| ||||||||| ||||| ||||| | | | | || ||| |||| || | |||  |||||||| ||||||||||||||||||||||  || ||||    
T  30367365 ggaaaagcttcaagaacttgttccaacaaactagtaaaaaaaagctggagaaattcctactaccatttattaatgatgtatctgaagcaggttctgaggt 30367464  T
Q  256 ggatttgcaagatgcctttaataggttcacctttgatagcacctgc 301  Q
    ||| |||||||||  ||| ||||||||||| ||||| |||| ||||    
T  30367465 ggacttgcaagatatcttgaataggttcacttttgacagcatctgc 30367510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 23 - 301
Target Start/End: Original strand, 13069318 - 13069593
Alignment:
Q  23 aagaatgttggcaactacgcgaaagggtcaaaattccatgatatttttgaagttcttggaggtagtattttcaattctgattccgacgatgtatggaaac 122  Q
    |||||| ||||||||||||  |  ||||| || ||| | || ||||||||  || |||||| | ||||||| |||||| ||||| |||   |||||||||    
T  13069318 aagaattttggcaactacggaagggggtccaacttcaaagaaatttttgatttttttggagatggtattttaaattctaattcccacg---tatggaaac 13069414  T
Q  123 aggagaagacaatgtttcatttaattcttggaaggaaaagattcaagaacatgttcgaacaatccattcagaagaaggtggataactacctcataccatt 222  Q
    |  ||| |||||||||||||| | |||||  ||||||||  ||||||||| | ||| ||||| | ||  |||| ||| |||| ||||||||  |||||||    
T  13069415 aacagaggacaatgtttcattcatttcttaaaaggaaaaccttcaagaacttcttccaacaaactatgaagaaaaagctggagaactacctactaccatt 13069514  T
Q  223 tcttaatgatgtatctgaagcaggagctcaggtggatttgcaagatgcctttaataggttcacctttgatagcacctgc 301  Q
    |||||||||||||||||||  ||| |||||||||||  || | |||||||| | ||||||||| |||||||||| ||||    
T  13069515 tcttaatgatgtatctgaaataggtgctcaggtggacctggaggatgccttgagtaggttcacttttgatagcatctgc 13069593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 133 - 296
Target Start/End: Complemental strand, 14708384 - 14708221
Alignment:
Q  133 aatgtttcatttaattcttggaaggaaaagattcaagaacatgttcgaacaatccattcagaagaaggtggataactacctcataccatttcttaatgat 232  Q
    |||||||||||||||| |   || |||||| ||||||||| | ||| ||||| |||||||||||| | |||| || | | |  |||||||||||||| ||    
T  14708384 aatgtttcatttaattatcaaaaagaaaagcttcaagaacttcttccaacaaaccattcagaagaggttggaaaattgcttactaccatttcttaatcat 14708285  T
Q  233 gtatctgaagcaggagctcaggtggatttgcaagatgcctttaataggttcacctttgatagca 296  Q
    ||||| |||| ||| |||||||||||||| ||||||| ||| ||||||||||| ||||| ||||    
T  14708284 gtatcagaagtaggtgctcaggtggatttacaagatgtcttgaataggttcacttttgacagca 14708221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 23 - 301
Target Start/End: Complemental strand, 13205521 - 13205246
Alignment:
Q  23 aagaatgttggcaactacgcgaaagggtcaaaattccatgatatttttgaagttcttggaggtagtattttcaattctgattccgacgatgtatggaaac 122  Q
    |||||| ||||||||||||  |  ||||| || ||| | || ||||||||  || |||||| | ||||||| |||||| ||||| |||   |||||||||    
T  13205521 aagaattttggcaactacggaagggggtccaacttcaaagaaatttttgatttttttggagatggtattttaaattctaattccaacg---tatggaaac 13205425  T
Q  123 aggagaagacaatgtttcatttaattcttggaaggaaaagattcaagaacatgttcgaacaatccattcagaagaaggtggataactacctcataccatt 222  Q
    |  ||| |||||||||||||| | ||||   ||||||||  ||||||||| | ||| ||||| | ||  |||| ||| |||| ||||||||  |||||||    
T  13205424 aacagaggacaatgtttcattcatttctcaaaaggaaaaccttcaagaacttcttccaacaaactatgaagaaaaagctggagaactacctactaccatt 13205325  T
Q  223 tcttaatgatgtatctgaagcaggagctcaggtggatttgcaagatgcctttaataggttcacctttgatagcacctgc 301  Q
    |||| ||||||||||||||  ||| |||||| ||||  || | |||||||| | ||||||||| |||||||||| ||||    
T  13205324 tcttgatgatgtatctgaaataggtgctcagctggacctggaggatgccttgagtaggttcacttttgatagcatctgc 13205246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 131 - 301
Target Start/End: Complemental strand, 13008145 - 13007975
Alignment:
Q  131 acaatgtttcatttaattcttggaaggaaaagattcaagaacatgttcgaacaatccattcagaagaaggtggataactacctcataccatttcttaatg 230  Q
    ||||||||||||| | ||||   ||||||||  ||||||||| | ||| ||||| | ||  |||| |||||||| |||| | |  |||||||||||||||    
T  13008145 acaatgtttcattcatttctcaaaaggaaaaccttcaagaactttttccaacaaactatgaagaaaaaggtggagaactgcttactaccatttcttaatg 13008046  T
Q  231 atgtatctgaagcaggagctcaggtggatttgcaagatgcctttaataggttcacctttgatagcacctgc 301  Q
    |||||||||||  ||| |||||||||||  || | |||||||| | ||||||||| ||||| |||| ||||    
T  13008045 atgtatctgaaataggtgctcaggtggacctggaggatgccttgagtaggttcacttttgacagcatctgc 13007975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 228 - 285
Target Start/End: Original strand, 13067510 - 13067567
Alignment:
Q  228 atgatgtatctgaagcaggagctcaggtggatttgcaagatgcctttaataggttcac 285  Q
    ||||||| |||||||||||  |||||||||| |||||||||||||| | |||||||||    
T  13067510 atgatgtgtctgaagcaggttctcaggtggacttgcaagatgccttgagtaggttcac 13067567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 216 - 301
Target Start/End: Complemental strand, 13101860 - 13101775
Alignment:
Q  216 taccatttcttaatgatgtatctgaagcaggagctcaggtggatttgcaagatgcctttaataggttcacctttgatagcacctgc 301  Q
    |||| |||||||||||||||||||||  ||| ||||| |||||  || | |||| ||||| ||||||||| ||||| |||| ||||    
T  13101860 taccgtttcttaatgatgtatctgaaataggtgctcatgtggacctggaggatgtctttagtaggttcacttttgacagcatctgc 13101775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 56 - 177
Target Start/End: Complemental strand, 31376527 - 31376409
Alignment:
Q  56 ttccatgatatttttgaagttcttggaggtagtattttcaattctgattccgacgatgtatggaaacaggagaagacaatgtttcatttaattcttggaa 155  Q
    ||||| || ||||||||| || |||||||| ||||| |||||||||||||| |||   |||||||| || ||| |||||||||||||| ||||||   ||    
T  31376527 ttccaagaaatttttgaattttttggaggtggtattgtcaattctgattcccacg---tatggaaagagaagaggacaatgtttcattcaattctcaaaa 31376431  T
Q  156 ggaaaagattcaagaacatgtt 177  Q
    ||||||| ||||||||| ||||    
T  31376430 ggaaaagcttcaagaacttgtt 31376409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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