View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3713_high_1 (Length: 715)
Name: NF3713_high_1
Description: NF3713
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3713_high_1 |
 | |
|
| [»] scaffold0054 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 632; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 632; E-Value: 0
Query Start/End: Original strand, 18 - 697
Target Start/End: Complemental strand, 32959135 - 32958456
Alignment:
| Q |
18 |
actacttcccattatgaccctccctttttatgcaaatgtccctcctctcaacaatatccacatcctctacgactgttacatcatgcatcagttgtatgaa |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
32959135 |
actacttcccattatgaccctccctttttatgcaaatgtccctcctctcaacaatatccacatcctctacgactgttacgtcatgcatcagttgtatgaa |
32959036 |
T |
|
| Q |
118 |
ccatgagatttgaaaatagaatcatttctttttctctaaccccaacggttcttaccactaatgcaacaacggtagaggatgcgggtttgaaatataaagt |
217 |
Q |
| |
|
|| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
32959035 |
ccgtgagatttgaaaatagaataatttctttttctctaaccccaacggttcttaccactaatgcaacaacgatagaggatgcgggtttgaaatataaagt |
32958936 |
T |
|
| Q |
218 |
agctgacaaaatatgacatagttaattaacaaatttgttgtgttttatggaatgtgacaaggcagcaacaacgtattttgggggagatgcgtcacaattt |
317 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32958935 |
agctgacaaaatgtgacatagttaattaacaaatttgttgtgttttatggaatgtgacaaggcagcaacaacgtattttgggggagatgcgtcacaattt |
32958836 |
T |
|
| Q |
318 |
ctgtcgagcaacatgtttggtttcctgtcatggttttagagtgttagtttcaggctgttctgactgctagtttggcttatggtttctgcgagttggtgtg |
417 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
32958835 |
ctgtcgagcaacatgtttggtttcctgtcatggttttagagtgttagtttcaggctgttgtgactgctagtttggcttatggtttctgcgagctggtgtg |
32958736 |
T |
|
| Q |
418 |
tacataggcttagagatttattttctgttggtgctaatgatgcattggaattcggtcatgacagtttttatgtgctttcctgcacttaccgttatttact |
517 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
32958735 |
tacataggcttagagatttattttcttttggtgctaatgatgtattggaattcggtcatgacagtttttatgtgctttcttgcacttaccgttatttact |
32958636 |
T |
|
| Q |
518 |
ctaaacaaaccaccacaaccatctcgaccaccatccttactcgtaccatccgtattcaacaatctcattcactcgtattccaatctgcaaccgctgaact |
617 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32958635 |
ctaaacaaaccaccacaaacatctcgaccaccatccttactcgtaccatccgtattcaacaatctcattcactcgtattccaatctgcaaccgctgaact |
32958536 |
T |
|
| Q |
618 |
tcattctctcaaaagaaaaggcgaacaacaactatataaatatgatgatattgccttctctgatcttcatcttaaatctt |
697 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32958535 |
tcattctctcaaaagaaaaggcgaacaacaactatatatatatgatgatattgccttctctgatcttcatcttaaatctt |
32958456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 342 - 418
Target Start/End: Original strand, 29142931 - 29143007
Alignment:
| Q |
342 |
ctgtcatggttttagagtgttagtttcaggctgttctgactgctagtttggcttatggtttctgcgagttggtgtgt |
418 |
Q |
| |
|
||||||||||||| |||| || |||| | |||||||||||||||||||||||| ||||||||||||| |||||||| |
|
|
| T |
29142931 |
ctgtcatggttttgcagtggtaatttcggactgttctgactgctagtttggcttctggtttctgcgagctggtgtgt |
29143007 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0054 (Bit Score: 82; Significance: 2e-38; HSPs: 1)
Name: scaffold0054
Description:
Target: scaffold0054; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 569 - 697
Target Start/End: Original strand, 38473 - 38599
Alignment:
| Q |
569 |
gtattcaacaatctcattcactcgtattccaatctgcaaccgctgaacttcattctctcaaaagaaaaggcgaacaacaactatataaatatgatgatat |
668 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||| | |||| | |||||||||| |
|
|
| T |
38473 |
gtattcaacaatctcattcactcgtattccaatctgcaaccgctgaacttcattctctcaaacaaaaaggtgaacaacagc--tatagacatgatgatat |
38570 |
T |
|
| Q |
669 |
tgccttctctgatcttcatcttaaatctt |
697 |
Q |
| |
|
||||||||| |||| ||||||||||||| |
|
|
| T |
38571 |
tgccttctccaatctgcatcttaaatctt |
38599 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 58; Significance: 5e-24; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 234 - 339
Target Start/End: Original strand, 49729760 - 49729865
Alignment:
| Q |
234 |
catagttaattaacaaatttgttgtgttttatggaatgtgacaaggcagcaacaacgtattttgggggagatgcgtcacaatttctgtcgagcaacatgt |
333 |
Q |
| |
|
|||| |||| |||||||||||||||| ||| ||||| |||||||| |||| || ||| |||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
49729760 |
cataattaaataacaaatttgttgtgctttgtggaacgtgacaagacagcgacggcgtgttttgggggagatgcgtcacaatttccatcgagcaacatgt |
49729859 |
T |
|
| Q |
334 |
ttggtt |
339 |
Q |
| |
|
|||||| |
|
|
| T |
49729860 |
ttggtt |
49729865 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University