View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3713_high_4 (Length: 373)

Name: NF3713_high_4
Description: NF3713
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3713_high_4
NF3713_high_4
[»] chr2 (5 HSPs)
chr2 (235-362)||(40626413-40626540)
chr2 (236-349)||(6457543-6457656)
chr2 (229-363)||(18665098-18665232)
chr2 (231-309)||(18881824-18881902)
chr2 (158-197)||(21208535-21208574)
[»] chr1 (9 HSPs)
chr1 (158-221)||(1931687-1931750)
chr1 (230-363)||(26793696-26793829)
chr1 (256-363)||(50004939-50005046)
chr1 (158-221)||(1937943-1938006)
chr1 (249-363)||(9383270-9383384)
chr1 (231-352)||(4076400-4076521)
chr1 (234-352)||(19806810-19806930)
chr1 (158-221)||(1948757-1948819)
chr1 (229-352)||(4950129-4950252)
[»] chr7 (4 HSPs)
chr7 (236-363)||(39644849-39644976)
chr7 (232-355)||(45884692-45884815)
chr7 (234-363)||(41482463-41482592)
chr7 (229-363)||(24429627-24429762)
[»] chr4 (2 HSPs)
chr4 (231-362)||(19181457-19181588)
chr4 (227-352)||(45413824-45413949)
[»] chr5 (1 HSPs)
chr5 (235-362)||(32529420-32529549)
[»] chr3 (2 HSPs)
chr3 (271-343)||(32794946-32795018)
chr3 (249-282)||(41865858-41865891)
[»] chr8 (2 HSPs)
chr8 (234-363)||(556722-556851)
chr8 (262-363)||(38503885-38503985)
[»] chr6 (1 HSPs)
chr6 (256-344)||(31799978-31800065)


Alignment Details
Target: chr2 (Bit Score: 56; Significance: 4e-23; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 235 - 362
Target Start/End: Original strand, 40626413 - 40626540
Alignment:
Q  235 cgtttggtgcacttgatagggagataagatatgataaaattatcatatactgattcaatttgttgtttagtgcactaataaaaaagaataatttaaatct 334  Q
    ||||| |||||| ||||||| ||| | |||||||||||| ||||||||  ||||||||| || ||||| |||||| ||||  |||| ||||||||||| |    
T  40626413 cgtttcgtgcacatgataggaagacaggatatgataaaactatcatatcttgattcaatctgctgtttggtgcaccaataggaaaggataatttaaatat 40626512  T
Q  335 atttctaatcatatcctactcatccttt 362  Q
    |||||||||| ||||||||||| |||||    
T  40626513 atttctaatcctatcctactcacccttt 40626540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 236 - 349
Target Start/End: Original strand, 6457543 - 6457656
Alignment:
Q  236 gtttggtgcacttgatagggagataagatatgataaaattatcatatactgattcaatttgttgtttagtgcactaataaaaaagaataatttaaatcta 335  Q
    ||||||||||| |||||| |||| | ||||||||| || ||||||||  ||||||||| |||||||| |||||| |||| ||||  |||| ||||||| |    
T  6457543 gtttggtgcacatgatagagagacaggatatgatagaactatcatatcatgattcaatctgttgtttggtgcaccaatagaaaatgataaattaaatcaa 6457642  T
Q  336 tttctaatcatatc 349  Q
    |||| |||||||||    
T  6457643 tttccaatcatatc 6457656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 229 - 363
Target Start/End: Original strand, 18665098 - 18665232
Alignment:
Q  229 agggtccgtttggtgcacttgatagggagataagatatgataaaattatcatatactgattcaatttgttgtttagtgcactaataaaaaagaataattt 328  Q
    ||||||||||||||||||  |||||| | |||  ||||||||||| ||||||||  || |  |||||||||||| |||||| || |  |||| |||| ||    
T  18665098 agggtccgtttggtgcacaagataggaacatagaatatgataaaactatcatatcttggtgtaatttgttgtttcgtgcaccaaaaggaaaggataactt 18665197  T
Q  329 aaatctatttctaatcatatcctactcatcctttg 363  Q
    ||| ||||||||||| ||||| |||||| ||||||    
T  18665198 aaacctatttctaataatatcttactcaccctttg 18665232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 231 - 309
Target Start/End: Complemental strand, 18881902 - 18881824
Alignment:
Q  231 ggtccgtttggtgcacttgatagggagataagatatgataaaattatcatatactgattcaatttgttgtttagtgcac 309  Q
    |||||||||||||| | || ||  ||||||||||||||||||| |||||||| || ||| |||||| ||||| ||||||    
T  18881902 ggtccgtttggtgcgcatgttaaagagataagatatgataaaactatcatatcctaattaaatttgatgtttggtgcac 18881824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 158 - 197
Target Start/End: Complemental strand, 21208574 - 21208535
Alignment:
Q  158 ctgtaatgaaaaataagaataaaactatgttattaaaatg 197  Q
    ||||||||||||||| |||||||| |||||||||||||||    
T  21208574 ctgtaatgaaaaatatgaataaaagtatgttattaaaatg 21208535  T

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Target: chr1 (Bit Score: 56; Significance: 4e-23; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 158 - 221
Target Start/End: Original strand, 1931687 - 1931750
Alignment:
Q  158 ctgtaatgaaaaataagaataaaactatgttattaaaatgacataatagattgtgtacaaccta 221  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||    
T  1931687 ctgtaatgaaaaataagaataaaacaatgttattaaaatgacataatagattgtgtacgaccta 1931750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 230 - 363
Target Start/End: Original strand, 26793696 - 26793829
Alignment:
Q  230 gggtccgtttggtgcacttgatagggagataagatatgataaaattatcatatactgattcaatttgttgtttagtgcactaataaaaaagaataattta 329  Q
    ||||| ||||||||||| ||||| | ||| | ||||||||| || |||||||| ||||||||||  ||||||| |||||| |||| ||||| |||| |||    
T  26793696 gggtctgtttggtgcacatgataagaagacatgatatgatagaactatcatatcctgattcaatccgttgtttggtgcaccaatagaaaaggataactta 26793795  T
Q  330 aatctatttctaatcatatcctactcatcctttg 363  Q
    ||  ||||||||||| ||||||| ||| ||||||    
T  26793796 aacttatttctaatcctatcctaatcaacctttg 26793829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 256 - 363
Target Start/End: Complemental strand, 50005046 - 50004939
Alignment:
Q  256 agataagatatgataaaattatcatatactgattcaatttgttgtttagtgcactaataaaaaagaataatttaaatctatttctaatcatatcctactc 355  Q
    ||||| |||||||||||| ||||||||  | ||  |||||| ||||| |||||| |||||||||| |||||||||| |||||||||||| ||||||| ||    
T  50005046 agataggatatgataaaactatcatatcttaatctaatttgatgtttggtgcaccaataaaaaaggataatttaaacctatttctaatcctatcctaatc 50004947  T
Q  356 atcctttg 363  Q
    | ||||||    
T  50004946 accctttg 50004939  T

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Target: chr1; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 158 - 221
Target Start/End: Original strand, 1937943 - 1938006
Alignment:
Q  158 ctgtaatgaaaaataagaataaaactatgttattaaaatgacataatagattgtgtacaaccta 221  Q
    ||||||| |||||||| |||||||| |||||| ||||||||||||||||||||||||| |||||    
T  1937943 ctgtaataaaaaataataataaaacaatgttactaaaatgacataatagattgtgtacgaccta 1938006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 249 - 363
Target Start/End: Complemental strand, 9383384 - 9383270
Alignment:
Q  249 gatagggagataagatatgataaaattatcatatactgattcaatttgttgtttagtgcactaataaaaaagaataatttaaatctatttctaatcatat 348  Q
    |||||||||| |||||||||||||| ||||| || |||||| |||   |||||| |||||| ||||  || | |||| ||||| | |||||||||| |||    
T  9383384 gatagggagaaaagatatgataaaactatcacatcctgattaaatccattgtttggtgcaccaataggaacggataaattaaaccaatttctaatcttat 9383285  T
Q  349 cctactcatcctttg 363  Q
    |||||||| ||||||    
T  9383284 cctactcaccctttg 9383270  T

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Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 231 - 352
Target Start/End: Complemental strand, 4076521 - 4076400
Alignment:
Q  231 ggtccgtttggtgcacttgatagggagataagatatgataaaattatcatatactgattcaatttgttgtttagtgcactaataaaaaagaataatttaa 330  Q
    |||| ||||||||||| ||||| ||||||| |||||||||| | |||||||  || ||| ||| || ||||| |||||  ||||  |||| |||| ||||    
T  4076521 ggtcggtttggtgcacatgataaggagataggatatgataacactatcatacccttatttaatctggtgtttggtgcatcaataggaaaggataaattaa 4076422  T
Q  331 atctatttctaatcatatccta 352  Q
    | ||||| |||||| |||||||    
T  4076421 acctattactaatcctatccta 4076400  T

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Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 234 - 352
Target Start/End: Complemental strand, 19806930 - 19806810
Alignment:
Q  234 ccgtttggtgcacttgatagggagataagatatgataaaattatcatatactgattcaatttgttgtttag--tgcactaataaaaaagaataatttaaa 331  Q
    ||||||||||||| ||||| ||||||| |||||||||| | |||| ||| || ||||||| || ||||| |  ||||  ||||  |||| |||| |||||    
T  19806930 ccgtttggtgcacatgataaggagataggatatgataacactatcctatccttattcaatctggtgtttggtttgcatcaataggaaaggataaattaaa 19806831  T
Q  332 tctatttctaatcatatccta 352  Q
     |||||||||||| |||||||    
T  19806830 cctatttctaatcctatccta 19806810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 158 - 221
Target Start/End: Original strand, 1948757 - 1948819
Alignment:
Q  158 ctgtaatgaaaaataagaataaaactatgttattaaaatgacataatagattgtgtacaaccta 221  Q
    ||||||||||||||||||||||||| |||||| | |||||| |||||| |||| |||| |||||    
T  1948757 ctgtaatgaaaaataagaataaaacaatgttact-aaatgatataatatattgcgtaccaccta 1948819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 229 - 352
Target Start/End: Original strand, 4950129 - 4950252
Alignment:
Q  229 agggtccgtttggtgcacttgatagggagataagatatgataaaattatcatatactgattcaatttgttgtttagtgcactaataaaaaagaataattt 328  Q
    |||||| ||||||||||| ||||| | | |||||||||||||||  |||| |||  || ||||||||| ||||| |||||  |||| ||||  |||||||    
T  4950129 agggtcagtttggtgcacatgataagaaaataagatatgataaacatatcctatcttgtttcaatttgatgtttggtgcatcaatagaaaatgataattt 4950228  T
Q  329 aaatctatttctaatcatatccta 352  Q
    |||   ||||  ||||||||||||    
T  4950229 aaactcattttcaatcatatccta 4950252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 52; Significance: 1e-20; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 236 - 363
Target Start/End: Original strand, 39644849 - 39644976
Alignment:
Q  236 gtttggtgcacttgatagggagataagatatgataaaattatcatatactgattcaatttgttgtttagtgcactaataaaaaagaataatttaaatcta 335  Q
    ||||||||||| ||||||| ||| | |||||||||||| ||||||||  |  ||||||||||||||| |||| | |||| ||||| |||| ||||| | |    
T  39644849 gtttggtgcacgtgataggaagacaggatatgataaaactatcatatcatatttcaatttgttgtttggtgcgccaatagaaaaggataacttaaaccca 39644948  T
Q  336 tttctaatcatatcctactcatcctttg 363  Q
    ||| ||||| ||||||||||||||||||    
T  39644949 tttataatcctatcctactcatcctttg 39644976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 232 - 355
Target Start/End: Complemental strand, 45884815 - 45884692
Alignment:
Q  232 gtccgtttggtgcacttgatagggagataagatatgataaaattatcatatactgattcaatttgttgtttagtgcactaataaaaaagaataatttaaa 331  Q
    ||||||| ||||||| ||||||| | | | |||||||||||||||||||||  ||||||||| ||||||||||||||| | ||  || | ||||||||||    
T  45884815 gtccgttcggtgcacatgataggaaaacaggatatgataaaattatcatatcttgattcaatatgttgtttagtgcaccagtatgaatggataatttaaa 45884716  T
Q  332 tctatttctaatcatatcctactc 355  Q
     | |||| ||||||||||||||||    
T  45884715 accatttttaatcatatcctactc 45884692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 234 - 363
Target Start/End: Complemental strand, 41482592 - 41482463
Alignment:
Q  234 ccgtttggtgcacttgatagggagataagatatgataaaattatcatatactgattcaatttgttgtttagtgcactaataaaaaagaataatttaaatc 333  Q
    ||||||||||||| ||||||| ||| | |||| ||||||| |||||| | |||||| |||  | ||||| |||||| || |  |||| |||| ||||| |    
T  41482592 ccgtttggtgcacatgataggaagacatgataggataaaactatcatctcctgatttaatgcgctgtttggtgcaccaacaggaaaggataacttaaacc 41482493  T
Q  334 tatttctaatcatatcctactcatcctttg 363  Q
    ||||| ||||||||||||||||| ||||||    
T  41482492 tatttttaatcatatcctactcaccctttg 41482463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 229 - 363
Target Start/End: Original strand, 24429627 - 24429762
Alignment:
Q  229 agggtccgtttggtgcacttgatagggagataagatatgataaaattatca-tatactgattcaatttgttgtttagtgcactaataaaaaagaataatt 327  Q
    |||||| |||||||||||  |||||| |||  | ||||||||||| ||||| ||| |||||||| | || || ||  ||||| |||| ||||  ||||||    
T  24429627 agggtctgtttggtgcacaagataggaagacgaaatatgataaaactatcattatcctgattcattctgctgcttgatgcaccaatagaaaatgataatt 24429726  T
Q  328 taaatctatttctaatcatatcctactcatcctttg 363  Q
    |||| |||||| ||||| |||| |||||| ||||||    
T  24429727 taaaactatttataatcctatcttactcaccctttg 24429762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 231 - 362
Target Start/End: Complemental strand, 19181588 - 19181457
Alignment:
Q  231 ggtccgtttggtgcacttgatagggagataagatatgataaaattatcatatactgattcaatttgttgtttagtgcactaataaaaaagaataatttaa 330  Q
    |||||||||||||||| |||||| |||| | ||||||||||||||||| ||| ||||| |||| | |||||| |||||| || |  | |  |||| ||||    
T  19181588 ggtccgtttggtgcacatgatagagagacatgatatgataaaattatcctatcctgatccaatctattgtttggtgcaccaacatgatatgataaattaa 19181489  T
Q  331 atctatttctaatcatatcctactcatccttt 362  Q
    | |||||||||||| |||||||||||||||||    
T  19181488 acctatttctaatcctatcctactcatccttt 19181457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 227 - 352
Target Start/End: Complemental strand, 45413949 - 45413824
Alignment:
Q  227 tgagggtccgtttggtgcacttgatagggagataagatatgataaaattatcatatactgattcaatttgttgtttagtgcactaataaaaaagaataat 326  Q
    |||||||||||||||||||||||||||||||| | |||| |||| || ||||||||  |||||||||  ||||||| |||||| ||||  |||| ||||     
T  45413949 tgagggtccgtttggtgcacttgatagggagacaggataggatagaactatcatatcttgattcaatcggttgtttggtgcaccaataggaaaggataaa 45413850  T
Q  327 ttaaatctatttctaatcatatccta 352  Q
    ||||| |||||||  ||| |||||||    
T  45413849 ttaaacctatttcctatcctatccta 45413824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 235 - 362
Target Start/End: Complemental strand, 32529549 - 32529420
Alignment:
Q  235 cgtttggtgcacttgatagggagataagatatgataaaattatcatata-ctga-ttcaatttgttgtttagtgcactaataaaaaagaataatttaaat 332  Q
    |||||| ||||| ||||| | ||| |||||||||||||| ||||||||| || | ||||||  | ||||| |||||| ||||||||||||||| |||||     
T  32529549 cgtttgatgcacatgataagaagacaagatatgataaaactatcatatatcttacttcaatccgctgtttggtgcaccaataaaaaagaataaattaaac 32529450  T
Q  333 ctatttctaatcatatcctactcatccttt 362  Q
     |||||||||||||||| || |||||||||    
T  32529449 ttatttctaatcatatcttattcatccttt 32529420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 271 - 343
Target Start/End: Complemental strand, 32795018 - 32794946
Alignment:
Q  271 aaattatcatatactgattcaatttgttgtttagtgcactaataaaaaagaataatttaaatctatttctaat 343  Q
    |||||||||||| |||||| ||||||||| || ||||||||||||||||  ||||||||||| ||||||||||    
T  32795018 aaattatcatatcctgatttaatttgttggttggtgcactaataaaaaatgataatttaaatttatttctaat 32794946  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 249 - 282
Target Start/End: Complemental strand, 41865891 - 41865858
Alignment:
Q  249 gatagggagataagatatgataaaattatcatat 282  Q
    ||||||||||||||||||||||||||||||||||    
T  41865891 gatagggagataagatatgataaaattatcatat 41865858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 234 - 363
Target Start/End: Original strand, 556722 - 556851
Alignment:
Q  234 ccgtttggtgcacttgatagggagataagatatgataaaattatcatatactgattcaatttgttgtttagtgcactaataaaaaagaataatttaaatc 333  Q
    ||||||| ||||| ||||| ||||||| |||||||||||   ||||||| ||||| |||   | ||||| |||||  |||| ||||  |||| ||||| |    
T  556722 ccgtttgatgcacatgataaggagataggatatgataaaccaatcatatcctgatccaaaccgctgtttcgtgcaacaatagaaaatgataaattaaacc 556821  T
Q  334 tatttctaatcatatcctactcatcctttg 363  Q
    ||||||||||||||||||| ||| ||||||    
T  556822 tatttctaatcatatcctattcaccctttg 556851  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 262 - 363
Target Start/End: Complemental strand, 38503985 - 38503885
Alignment:
Q  262 gatatgataaaattatcatatactgattcaatttgttgtttagtgcactaataaaaaagaataatttaaatctatttctaatcatatcctactcatcctt 361  Q
    |||| ||||||| |||||||| ||| ||||||||||||||| |||||| || |  ||||||||| |||||   | |||||| | ||||||||||| ||||    
T  38503985 gataggataaaactatcatatcctgtttcaatttgttgtttggtgcaccaa-aggaaagaataacttaaactcacttctaaccctatcctactcaccctt 38503887  T
Q  362 tg 363  Q
    ||    
T  38503886 tg 38503885  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 256 - 344
Target Start/End: Complemental strand, 31800065 - 31799978
Alignment:
Q  256 agataagatatgataaaattatcatatactgattcaatttgttgtttagtgcactaataaaaaagaataatttaaatctatttctaatc 344  Q
    ||||||||| ||||||||||||  |||  | |||||||||||| |||  ||||  ||||||||| ||||| ||||| ||||||||||||    
T  31800065 agataagatgtgataaaattatattatcttaattcaatttgttatttgatgcatcaataaaaaataataaattaaa-ctatttctaatc 31799978  T

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