View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3713_high_6 (Length: 346)

Name: NF3713_high_6
Description: NF3713
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3713_high_6
NF3713_high_6
[»] chr8 (18 HSPs)
chr8 (9-330)||(39086618-39086939)
chr8 (188-247)||(30935983-30936042)
chr8 (246-307)||(2744036-2744097)
chr8 (246-306)||(19715703-19715764)
chr8 (188-244)||(2743912-2743968)
chr8 (188-244)||(4125130-4125186)
chr8 (243-311)||(13468718-13468786)
chr8 (246-307)||(4125001-4125062)
chr8 (246-296)||(7839241-7839291)
chr8 (188-241)||(12958194-12958247)
chr8 (200-244)||(13468851-13468895)
chr8 (246-285)||(36994499-36994538)
chr8 (194-244)||(19715832-19715882)
chr8 (246-290)||(12958079-12958123)
chr8 (188-244)||(36994606-36994662)
chr8 (190-241)||(44705653-44705704)
chr8 (247-296)||(40320200-40320249)
chr8 (243-307)||(8521798-8521861)
[»] chr7 (29 HSPs)
chr7 (188-247)||(13254204-13254263)
chr7 (188-244)||(8839387-8839443)
chr7 (188-244)||(29059784-29059840)
chr7 (246-307)||(31492206-31492267)
chr7 (188-240)||(19477359-19477411)
chr7 (188-244)||(21747145-21747201)
chr7 (246-306)||(28665193-28665253)
chr7 (246-307)||(29059908-29059969)
chr7 (188-245)||(40099377-40099434)
chr7 (188-240)||(28537369-28537421)
chr7 (190-247)||(2657939-2657996)
chr7 (203-244)||(31492097-31492138)
chr7 (251-304)||(36821060-36821113)
chr7 (251-303)||(35707954-35708006)
chr7 (246-311)||(19477225-19477287)
chr7 (249-306)||(11486722-11486779)
chr7 (246-303)||(21747021-21747078)
chr7 (247-296)||(24172313-24172362)
chr7 (190-243)||(42741919-42741972)
chr7 (243-307)||(45778964-45779028)
chr7 (247-282)||(29428794-29428829)
chr7 (188-238)||(32469909-32469959)
chr7 (246-296)||(37339721-37339771)
chr7 (188-237)||(7265426-7265475)
chr7 (254-303)||(28537497-28537546)
chr7 (246-303)||(31776521-31776578)
chr7 (254-311)||(32470029-32470086)
chr7 (188-240)||(35707826-35707878)
chr7 (188-244)||(46373652-46373708)
[»] chr1 (22 HSPs)
chr1 (249-311)||(36806717-36806779)
chr1 (188-244)||(14500364-14500420)
chr1 (188-240)||(16756061-16756113)
chr1 (188-247)||(45806215-45806274)
chr1 (248-306)||(18428120-18428178)
chr1 (250-314)||(46864198-46864262)
chr1 (250-305)||(42297421-42297476)
chr1 (246-295)||(16756185-16756234)
chr1 (188-233)||(28724652-28724697)
chr1 (188-240)||(22022099-22022151)
chr1 (246-311)||(15642558-15642623)
chr1 (188-241)||(17600607-17600660)
chr1 (190-238)||(10840998-10841046)
chr1 (246-306)||(44913212-44913272)
chr1 (246-285)||(12035653-12035692)
chr1 (246-296)||(9780977-9781027)
chr1 (246-296)||(22022223-22022273)
chr1 (243-301)||(28724772-28724830)
chr1 (250-287)||(6607691-6607728)
chr1 (263-295)||(789833-789865)
chr1 (191-247)||(35692467-35692523)
chr1 (246-282)||(49071680-49071716)
[»] chr4 (25 HSPs)
chr4 (188-241)||(35972322-35972375)
chr4 (188-244)||(31307172-31307228)
chr4 (246-307)||(31307043-31307104)
chr4 (191-244)||(38766071-38766124)
chr4 (188-240)||(14854584-14854636)
chr4 (188-244)||(45994501-45994557)
chr4 (246-311)||(9012373-9012438)
chr4 (188-244)||(13686580-13686636)
chr4 (188-233)||(25768769-25768814)
chr4 (187-247)||(38844271-38844331)
chr4 (190-241)||(10199213-10199264)
chr4 (250-289)||(13948587-13948626)
chr4 (246-296)||(14854708-14854758)
chr4 (246-316)||(35972446-35972516)
chr4 (250-296)||(38766196-38766242)
chr4 (246-311)||(33529360-33529425)
chr4 (188-247)||(32005254-32005313)
chr4 (190-240)||(35334208-35334259)
chr4 (187-244)||(11140435-11140492)
chr4 (188-237)||(51853677-51853726)
chr4 (191-247)||(22189491-22189547)
chr4 (246-282)||(35334100-35334136)
chr4 (188-232)||(37241392-37241436)
chr4 (188-244)||(45695914-45695970)
chr4 (250-286)||(45994629-45994665)
[»] chr3 (20 HSPs)
chr3 (246-311)||(25224802-25224867)
chr3 (188-244)||(25224678-25224734)
chr3 (188-244)||(30996071-30996127)
chr3 (246-307)||(8757447-8757508)
chr3 (246-307)||(30995942-30996003)
chr3 (188-240)||(38088614-38088666)
chr3 (187-241)||(48204420-48204474)
chr3 (190-247)||(38331109-38331166)
chr3 (243-306)||(27763821-27763884)
chr3 (188-238)||(14352533-14352583)
chr3 (249-311)||(46725530-46725592)
chr3 (188-244)||(27763702-27763756)
chr3 (246-311)||(38331231-38331296)
chr3 (190-240)||(46604670-46604720)
chr3 (249-311)||(48204284-48204346)
chr3 (250-303)||(55123204-55123257)
chr3 (251-307)||(40318426-40318482)
chr3 (191-234)||(42514586-42514629)
chr3 (251-296)||(39950320-39950365)
chr3 (250-306)||(22288342-22288398)
[»] chr5 (10 HSPs)
chr5 (243-307)||(10592027-10592091)
chr5 (188-247)||(28023546-28023605)
chr5 (188-244)||(10591906-10591962)
chr5 (246-307)||(5123475-5123536)
chr5 (243-311)||(25983765-25983833)
chr5 (246-307)||(22187975-22188036)
chr5 (250-303)||(30784967-30785020)
chr5 (247-306)||(31113438-31113497)
chr5 (188-233)||(30785103-30785148)
chr5 (246-282)||(2760309-2760345)
[»] chr6 (12 HSPs)
chr6 (246-311)||(21910308-21910372)
chr6 (192-247)||(12411131-12411186)
chr6 (246-311)||(12836870-12836935)
chr6 (191-240)||(423637-423686)
chr6 (188-244)||(21910184-21910240)
chr6 (190-237)||(15614686-15614733)
chr6 (245-303)||(12411250-12411308)
chr6 (249-282)||(9536873-9536906)
chr6 (204-241)||(21029092-21029129)
chr6 (243-296)||(28099343-28099396)
chr6 (188-241)||(31412102-31412155)
chr6 (191-247)||(278374-278430)
[»] chr2 (25 HSPs)
chr2 (188-241)||(42745225-42745278)
chr2 (192-244)||(5394380-5394432)
chr2 (188-244)||(37568833-37568889)
chr2 (188-244)||(44732679-44732735)
chr2 (188-247)||(28365928-28365987)
chr2 (246-311)||(5394499-5394564)
chr2 (188-241)||(12133339-12133392)
chr2 (188-245)||(17981477-17981534)
chr2 (192-244)||(18105468-18105520)
chr2 (246-303)||(17981600-17981657)
chr2 (188-241)||(31579338-31579391)
chr2 (245-305)||(31579208-31579268)
chr2 (249-305)||(42745095-42745151)
chr2 (190-241)||(7020467-7020518)
chr2 (246-296)||(25423847-25423897)
chr2 (191-244)||(993736-993789)
chr2 (246-307)||(37092172-37092233)
chr2 (243-307)||(37179978-37180042)
chr2 (192-248)||(40688832-40688888)
chr2 (243-282)||(14121884-14121923)
chr2 (188-247)||(19252595-19252654)
chr2 (188-237)||(9438249-9438298)
chr2 (243-303)||(18105344-18105403)
chr2 (188-240)||(33756956-33757008)
chr2 (243-303)||(38464055-38464115)
[»] scaffold0020 (1 HSPs)
scaffold0020 (188-241)||(167834-167887)
[»] scaffold0182 (2 HSPs)
scaffold0182 (246-307)||(26434-26495)
scaffold0182 (210-244)||(26332-26366)
[»] scaffold0013 (1 HSPs)
scaffold0013 (246-306)||(29130-29190)
[»] scaffold0009 (1 HSPs)
scaffold0009 (200-240)||(32374-32414)


Alignment Details
Target: chr8 (Bit Score: 281; Significance: 1e-157; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 9 - 330
Target Start/End: Original strand, 39086618 - 39086939
Alignment:
Q  9 agcagagaataagatgagtacacgttgcaatttctagaagttaacaaaatcattattagctgatgaaattgacattttgttgcttaaattacttgaaaca 108  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39086618 agcagagaataagatgagtacacattgcaatttctagaagttaacaaaatcattattagctgatgaaattgacattttgttgcttaaattacttgaaaca 39086717  T
Q  109 taatcaaccatcataagcggnnnnnnnaaggctaaagtgagaacagccatgttataatccttcataaatcaaaacgatcacccaagagcgcttagatgag 208  Q
    ||||||||||||||||||||       ||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||    
T  39086718 taatcaaccatcataagcggtttttttaaggctaaagtgagaacagccgtattataatccttcataaatcaaaacgatcacccaagagcgcttagatgag 39086817  T
Q  209 atggaacgggcctcttctagcttaaccaaggtcctgagtcccacaatgctcgagggattagtctctgcagttgcacgcggagaatacctggtttacaccc 308  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||    
T  39086818 atggaacgggcctcttctagcttaaccaaggtcctgagtcccacaatgctcgagggattagtctccgcagttgcacgcggaggatacctggtttacaccc 39086917  T
Q  309 aaataaatcaaaacgatcataa 330  Q
    ||||||||||||||||||||||    
T  39086918 aaataaatcaaaacgatcataa 39086939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 188 - 247
Target Start/End: Original strand, 30935983 - 30936042
Alignment:
Q  188 acccaagagcgcttagatgagatggaacgggcctcttctagcttaaccaaggtcctgagt 247  Q
    |||||||||| |||||||||||||||||||| |||||||| |||||||||||||||||||    
T  30935983 acccaagagcacttagatgagatggaacgggtctcttctaacttaaccaaggtcctgagt 30936042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 246 - 307
Target Start/End: Original strand, 2744036 - 2744097
Alignment:
Q  246 gtcccacaatgctcgagggattagtctctgcagttgcacgcggagaatacctggtttacacc 307  Q
    |||||||||||||||||||||||||||| |||||||| ||||||| ||||| ||||||||||    
T  2744036 gtcccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacccggtttacacc 2744097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 246 - 306
Target Start/End: Complemental strand, 19715764 - 19715703
Alignment:
Q  246 gtcccacaatgctcgaggg-attagtctctgcagttgcacgcggagaatacctggtttacac 306  Q
    ||||||||||||||||||| ||||||||| |||||||| |||||||||||||||||||||||    
T  19715764 gtcccacaatgctcgaggggattagtctccgcagttgcgcgcggagaatacctggtttacac 19715703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 188 - 244
Target Start/End: Original strand, 2743912 - 2743968
Alignment:
Q  188 acccaagagcgcttagatgagatggaacgggcctcttctagcttaaccaaggtcctg 244  Q
    ||||||||||  ||||||||||||||||||| |||||||||||||||||||||||||    
T  2743912 acccaagagcatttagatgagatggaacgggtctcttctagcttaaccaaggtcctg 2743968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 188 - 244
Target Start/End: Complemental strand, 4125186 - 4125130
Alignment:
Q  188 acccaagagcgcttagatgagatggaacgggcctcttctagcttaaccaaggtcctg 244  Q
    |||||||||| |||||||||||||||||||| |||||||||||||||||| ||||||    
T  4125186 acccaagagcacttagatgagatggaacgggtctcttctagcttaaccaatgtcctg 4125130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 243 - 311
Target Start/End: Complemental strand, 13468786 - 13468718
Alignment:
Q  243 tgagtcccacaatgctcgagggattagtctctgcagttgcacgcggagaatacctggtttacacccaaa 311  Q
    ||||||||||||||||||| ||||||||||| |||||||| | ||||| ||||| ||||||||||||||    
T  13468786 tgagtcccacaatgctcgaaggattagtctccgcagttgcgcacggaggatacccggtttacacccaaa 13468718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 246 - 307
Target Start/End: Complemental strand, 4125062 - 4125001
Alignment:
Q  246 gtcccacaatgctcgagggattagtctctgcagttgcacgcggagaatacctggtttacacc 307  Q
    |||||||||||||||||||||||||||| |||||||| ||||||| ||||| | ||||||||    
T  4125062 gtcccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacccgatttacacc 4125001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 246 - 296
Target Start/End: Complemental strand, 7839291 - 7839241
Alignment:
Q  246 gtcccacaatgctcgagggattagtctctgcagttgcacgcggagaatacc 296  Q
    |||||||||||||||||||||||||||| |||||||| ||||||| |||||    
T  7839291 gtcccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacc 7839241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 188 - 241
Target Start/End: Complemental strand, 12958247 - 12958194
Alignment:
Q  188 acccaagagcgcttagatgagatggaacgggcctcttctagcttaaccaaggtc 241  Q
    ||||||||| ||||||||||||||||||  | ||||||||||||||||||||||    
T  12958247 acccaagagtgcttagatgagatggaactagtctcttctagcttaaccaaggtc 12958194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 200 - 244
Target Start/End: Complemental strand, 13468895 - 13468851
Alignment:
Q  200 ttagatgagatggaacgggcctcttctagcttaaccaaggtcctg 244  Q
    |||||| |||||||||||| |||||||||||||||||||||||||    
T  13468895 ttagattagatggaacgggtctcttctagcttaaccaaggtcctg 13468851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 246 - 285
Target Start/End: Complemental strand, 36994538 - 36994499
Alignment:
Q  246 gtcccacaatgctcgagggattagtctctgcagttgcacg 285  Q
    ||||||||| ||||||||||||||||||||||||||||||    
T  36994538 gtcccacaaggctcgagggattagtctctgcagttgcacg 36994499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 194 - 244
Target Start/End: Complemental strand, 19715882 - 19715832
Alignment:
Q  194 gagcgcttagatgagatggaacgggcctcttctagcttaaccaaggtcctg 244  Q
    ||||||||||||||||||||||  | || ||||||||||||||||||||||    
T  19715882 gagcgcttagatgagatggaacatgtcttttctagcttaaccaaggtcctg 19715832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 246 - 290
Target Start/End: Complemental strand, 12958123 - 12958079
Alignment:
Q  246 gtcccacaatgctcgagggattagtctctgcagttgcacgcggag 290  Q
    |||||||||||||||||||||||||||| ||||| || |||||||    
T  12958123 gtcccacaatgctcgagggattagtctccgcagtagcgcgcggag 12958079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 188 - 244
Target Start/End: Complemental strand, 36994662 - 36994606
Alignment:
Q  188 acccaagagcgcttagatgagatggaacgggcctcttctagcttaaccaaggtcctg 244  Q
    |||||||||||||||||| |||||| ||  | ||||||||| |||||||||||||||    
T  36994662 acccaagagcgcttagataagatggcacatgtctcttctagtttaaccaaggtcctg 36994606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 190 - 241
Target Start/End: Original strand, 44705653 - 44705704
Alignment:
Q  190 ccaagagcgcttagatgagatggaacgggcctcttctagcttaaccaaggtc 241  Q
    ||||||||| ||||||| |||||||| || ||||||||| ||||||||||||    
T  44705653 ccaagagcgtttagatgggatggaacaggtctcttctagtttaaccaaggtc 44705704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 247 - 296
Target Start/End: Original strand, 40320200 - 40320249
Alignment:
Q  247 tcccacaatgctcgagggattagtctctgcagttgcacgcggagaatacc 296  Q
    |||||| ||||||||| |||||||||||| ||||| |||||||| |||||    
T  40320200 tcccacgatgctcgagagattagtctctgtagttgtacgcggaggatacc 40320249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 243 - 307
Target Start/End: Original strand, 8521798 - 8521861
Alignment:
Q  243 tgagtcccacaatgctcgagggattagtctctgcagttgcacgcggagaatacctggtttacacc 307  Q
    |||||||||||||||||||||||||||| ||  ||||||| ||||||  ||||| | ||||||||    
T  8521798 tgagtcccacaatgctcgagggattagtatc-ccagttgcgcgcggaagatacccgatttacacc 8521861  T

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Target: chr7 (Bit Score: 56; Significance: 4e-23; HSPs: 29)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 188 - 247
Target Start/End: Complemental strand, 13254263 - 13254204
Alignment:
Q  188 acccaagagcgcttagatgagatggaacgggcctcttctagcttaaccaaggtcctgagt 247  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  13254263 acccaagagcgcttagatgagatggaacgggtctcttctagcttaaccaaggtcctgagt 13254204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 188 - 244
Target Start/End: Complemental strand, 8839443 - 8839387
Alignment:
Q  188 acccaagagcgcttagatgagatggaacgggcctcttctagcttaaccaaggtcctg 244  Q
    |||||||||||||||||||||||| |||||| |||||||||||||||||||||||||    
T  8839443 acccaagagcgcttagatgagatgaaacgggtctcttctagcttaaccaaggtcctg 8839387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 188 - 244
Target Start/End: Original strand, 29059784 - 29059840
Alignment:
Q  188 acccaagagcgcttagatgagatggaacgggcctcttctagcttaaccaaggtcctg 244  Q
    |||||||||| |||||||||||||||||||| |||||||||||||||||||||||||    
T  29059784 acccaagagcacttagatgagatggaacgggtctcttctagcttaaccaaggtcctg 29059840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 246 - 307
Target Start/End: Original strand, 31492206 - 31492267
Alignment:
Q  246 gtcccacaatgctcgagggattagtctctgcagttgcacgcggagaatacctggtttacacc 307  Q
    |||||||||||||||||||||||||||| |||||||| ||||||| ||||| ||||||||||    
T  31492206 gtcccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacccggtttacacc 31492267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 188 - 240
Target Start/End: Complemental strand, 19477411 - 19477359
Alignment:
Q  188 acccaagagcgcttagatgagatggaacgggcctcttctagcttaaccaaggt 240  Q
    ||||||||||| ||||||||||||||||||| |||||||||||||||||||||    
T  19477411 acccaagagcgtttagatgagatggaacgggtctcttctagcttaaccaaggt 19477359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 188 - 244
Target Start/End: Complemental strand, 21747201 - 21747145
Alignment:
Q  188 acccaagagcgcttagatgagatggaacgggcctcttctagcttaaccaaggtcctg 244  Q
    ||||||||||| ||||||||||||||||||| |||||||| ||||||||||||||||    
T  21747201 acccaagagcgtttagatgagatggaacgggtctcttctaacttaaccaaggtcctg 21747145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 246 - 306
Target Start/End: Original strand, 28665193 - 28665253
Alignment:
Q  246 gtcccacaatgctcgagggattagtctctgcagttgcacgcggagaatacctggtttacac 306  Q
    |||||||||||||||||||||||||||| |||||||||||||||| |||||  ||||||||    
T  28665193 gtcccacaatgctcgagggattagtctccgcagttgcacgcggaggatacccagtttacac 28665253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 246 - 307
Target Start/End: Original strand, 29059908 - 29059969
Alignment:
Q  246 gtcccacaatgctcgagggattagtctctgcagttgcacgcggagaatacctggtttacacc 307  Q
    ||||||||||||| |||||||||||||| |||||||| ||||||| ||||| ||||||||||    
T  29059908 gtcccacaatgcttgagggattagtctccgcagttgcgcgcggaggatacccggtttacacc 29059969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 188 - 245
Target Start/End: Complemental strand, 40099434 - 40099377
Alignment:
Q  188 acccaagagcgcttagatgagatggaacgggcctcttctagcttaaccaaggtcctga 245  Q
    |||| |||||||||||||||||||||||||| ||||||||||||||| ||| ||||||    
T  40099434 acccgagagcgcttagatgagatggaacgggtctcttctagcttaactaagatcctga 40099377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 188 - 240
Target Start/End: Original strand, 28537369 - 28537421
Alignment:
Q  188 acccaagagcgcttagatgagatggaacgggcctcttctagcttaaccaaggt 240  Q
    ||||||||||||||||||||||||||||||| |||||||| ||||| ||||||    
T  28537369 acccaagagcgcttagatgagatggaacgggtctcttctaacttaatcaaggt 28537421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 190 - 247
Target Start/End: Complemental strand, 2657996 - 2657939
Alignment:
Q  190 ccaagagcgcttagatgagatggaacgggcctcttctagcttaaccaaggtcctgagt 247  Q
    ||||||||||||||||||||||||||| | |||||||| ||||| ||||| |||||||    
T  2657996 ccaagagcgcttagatgagatggaacgagtctcttctaacttaatcaaggccctgagt 2657939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 203 - 244
Target Start/End: Original strand, 31492097 - 31492138
Alignment:
Q  203 gatgagatggaacgggcctcttctagcttaaccaaggtcctg 244  Q
    |||||||||||||||| |||||||||||||||||||||||||    
T  31492097 gatgagatggaacgggtctcttctagcttaaccaaggtcctg 31492138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 251 - 304
Target Start/End: Complemental strand, 36821113 - 36821060
Alignment:
Q  251 acaatgctcgagggattagtctctgcagttgcacgcggagaatacctggtttac 304  Q
    |||||||||||||||||||||||||||||||| ||| ||| |||| ||||||||    
T  36821113 acaatgctcgagggattagtctctgcagttgcgcgcagaggatacttggtttac 36821060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 251 - 303
Target Start/End: Original strand, 35707954 - 35708006
Alignment:
Q  251 acaatgctcgagggattagtctctgcagttgcacgcggagaatacctggttta 303  Q
    |||||||||||||||||||||||||||||||| || |||| ||||| ||||||    
T  35707954 acaatgctcgagggattagtctctgcagttgcgcgtggaggatacccggttta 35708006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 246 - 311
Target Start/End: Complemental strand, 19477287 - 19477225
Alignment:
Q  246 gtcccacaatgctcgagggattagtctctgcagttgcacgcggagaatacctggtttacacccaaa 311  Q
    ||||||||||||| |||||||||||||| ||||||||  |||||| ||| ||||||||||||||||    
T  19477287 gtcccacaatgct-gagggattagtctccgcagttgc--gcggaggatagctggtttacacccaaa 19477225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 249 - 306
Target Start/End: Complemental strand, 11486779 - 11486722
Alignment:
Q  249 ccacaatgctcgagggattagtctctgcagttgcacgcggagaatacctggtttacac 306  Q
    ||||||||||| || ||||||||||| ||||||| ||||||| ||||| |||||||||    
T  11486779 ccacaatgctcaagagattagtctctacagttgcgcgcggaggatacccggtttacac 11486722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 246 - 303
Target Start/End: Complemental strand, 21747078 - 21747021
Alignment:
Q  246 gtcccacaatgctcgagggattagtctctgcagttgcacgcggagaatacctggttta 303  Q
    |||||||||| ||||||||||||||||  |||||||  ||||||| ||||||||||||    
T  21747078 gtcccacaatcctcgagggattagtcttcgcagttgtgcgcggaggatacctggttta 21747021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 247 - 296
Target Start/End: Original strand, 24172313 - 24172362
Alignment:
Q  247 tcccacaatgctcgagggattagtctctgcagttgcacgcggagaatacc 296  Q
    ||||||||||||||| |||||||||| ||||||||| ||||||| |||||    
T  24172313 tcccacaatgctcgaaggattagtctatgcagttgcgcgcggagtatacc 24172362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 190 - 243
Target Start/End: Complemental strand, 42741972 - 42741919
Alignment:
Q  190 ccaagagcgcttagatgagatggaacgggcctcttctagcttaaccaaggtcct 243  Q
    ||||||||| |||||||||||||||| || |||||||| ||||||||| |||||    
T  42741972 ccaagagcgtttagatgagatggaacaggtctcttctatcttaaccaatgtcct 42741919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 243 - 307
Target Start/End: Original strand, 45778964 - 45779028
Alignment:
Q  243 tgagtcccacaatgctcgagggattagtctctgcagttgcacgcggagaatacctggtttacacc 307  Q
    |||||| |||||| ||||||||||||||||| ||||||||    |||| ||||||||||||||||    
T  45778964 tgagtctcacaatactcgagggattagtctccgcagttgcgaatggaggatacctggtttacacc 45779028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 247 - 282
Target Start/End: Complemental strand, 29428829 - 29428794
Alignment:
Q  247 tcccacaatgctcgagggattagtctctgcagttgc 282  Q
    |||||||||| |||||||||||||||||||||||||    
T  29428829 tcccacaatgttcgagggattagtctctgcagttgc 29428794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 188 - 238
Target Start/End: Original strand, 32469909 - 32469959
Alignment:
Q  188 acccaagagcgcttagatgagatggaacgggcctcttctagcttaaccaag 238  Q
    |||||| |||| ||||||||||||||||| | |||||||||||||| ||||    
T  32469909 acccaaaagcgtttagatgagatggaacgagtctcttctagcttaatcaag 32469959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 246 - 296
Target Start/End: Complemental strand, 37339771 - 37339721
Alignment:
Q  246 gtcccacaatgctcgagggattagtctctgcagttgcacgcggagaatacc 296  Q
    |||||| ||||||||||||||||||||| |||||||| | ||||| |||||    
T  37339771 gtcccataatgctcgagggattagtctccgcagttgcgcacggaggatacc 37339721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 188 - 237
Target Start/End: Complemental strand, 7265475 - 7265426
Alignment:
Q  188 acccaagagcgcttagatgagatggaacgggcctcttctagcttaaccaa 237  Q
    ||||||||||| ||| ||||||||  ||||| ||||||||||||||||||    
T  7265475 acccaagagcgtttatatgagatgacacgggtctcttctagcttaaccaa 7265426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 254 - 303
Target Start/End: Original strand, 28537497 - 28537546
Alignment:
Q  254 atgctcgagggattagtctctgcagttgcacgcggagaatacctggttta 303  Q
    ||||| |||||||||||||| ||||||||||||| || ||||| ||||||    
T  28537497 atgcttgagggattagtctccgcagttgcacgcgaaggatacccggttta 28537546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 246 - 303
Target Start/End: Original strand, 31776521 - 31776578
Alignment:
Q  246 gtcccacaatgctcgagggattagtctctgcagttgcacgcggagaatacctggttta 303  Q
    |||||||||| |||||||||||| |||  ||||||||  |||||| ||||||||||||    
T  31776521 gtcccacaatactcgagggattaatcttcgcagttgcgggcggaggatacctggttta 31776578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 254 - 311
Target Start/End: Original strand, 32470029 - 32470086
Alignment:
Q  254 atgctcgagggattagtctctgcagttgcacgcggagaatacctggtttacacccaaa 311  Q
    ||||||||| ||||||| |  |||||||||||||||| ||| |||||||| |||||||    
T  32470029 atgctcgagagattagtgttcgcagttgcacgcggaggatatctggtttatacccaaa 32470086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 188 - 240
Target Start/End: Original strand, 35707826 - 35707878
Alignment:
Q  188 acccaagagcgcttagatgagatggaacgggcctcttctagcttaaccaaggt 240  Q
    ||||||||||| |||||| |||| |||| || ||||||||| |||||||||||    
T  35707826 acccaagagcgtttagattagattgaacaggtctcttctagtttaaccaaggt 35707878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 188 - 244
Target Start/End: Original strand, 46373652 - 46373708
Alignment:
Q  188 acccaagagcgcttagatgagatggaacgggcctcttctagcttaaccaaggtcctg 244  Q
    |||||||||| |||||||||||||   |||| |||||||||||||| |||| |||||    
T  46373652 acccaagagctcttagatgagatgacgcgggtctcttctagcttaagcaagatcctg 46373708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 55; Significance: 1e-22; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 249 - 311
Target Start/End: Original strand, 36806717 - 36806779
Alignment:
Q  249 ccacaatgctcgagggattagtctctgcagttgcacgcggagaatacctggtttacacccaaa 311  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||    
T  36806717 ccacaatgctcgagggattagtctctgcagttgcacgcggaggatacccggtttacacccaaa 36806779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 188 - 244
Target Start/End: Complemental strand, 14500420 - 14500364
Alignment:
Q  188 acccaagagcgcttagatgagatggaacgggcctcttctagcttaaccaaggtcctg 244  Q
    ||||||||| ||||||||| ||||||||||| |||||||||||||||||||||||||    
T  14500420 acccaagagtgcttagatgcgatggaacgggtctcttctagcttaaccaaggtcctg 14500364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 188 - 240
Target Start/End: Original strand, 16756061 - 16756113
Alignment:
Q  188 acccaagagcgcttagatgagatggaacgggcctcttctagcttaaccaaggt 240  Q
    ||||||||||||||||||||||||||||||  |||||||||||||||||||||    
T  16756061 acccaagagcgcttagatgagatggaacggatctcttctagcttaaccaaggt 16756113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 188 - 247
Target Start/End: Original strand, 45806215 - 45806274
Alignment:
Q  188 acccaagagcgcttagatgagatggaacgggcctcttctagcttaaccaaggtcctgagt 247  Q
    ||||| ||||||||||||||||| ||||||| |||||||| |||||||||||||||||||    
T  45806215 acccaggagcgcttagatgagatagaacgggtctcttctatcttaaccaaggtcctgagt 45806274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 248 - 306
Target Start/End: Complemental strand, 18428178 - 18428120
Alignment:
Q  248 cccacaatgctcgagggattagtctctgcagttgcacgcggagaatacctggtttacac 306  Q
    ||||||||||||||||||||||||||||||||||| ||||||| ||||| | |||||||    
T  18428178 cccacaatgctcgagggattagtctctgcagttgcgcgcggaggatacccgatttacac 18428120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 250 - 314
Target Start/End: Original strand, 46864198 - 46864262
Alignment:
Q  250 cacaatgctcgagggattagtctctgcagttgcacgcggagaatacctggtttacacccaaataa 314  Q
    ||||||| ||||||||||||||||||||||||| |||  || ||||||| |||||||||||||||    
T  46864198 cacaatgttcgagggattagtctctgcagttgcgcgcaaaggatacctgatttacacccaaataa 46864262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 250 - 305
Target Start/End: Complemental strand, 42297476 - 42297421
Alignment:
Q  250 cacaatgctcgagggattagtctctgcagttgcacgcggagaatacctggtttaca 305  Q
    |||||||||||||||||||||||| |||||||| ||||||| |||||| |||||||    
T  42297476 cacaatgctcgagggattagtctccgcagttgcgcgcggaggatacctagtttaca 42297421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 246 - 295
Target Start/End: Original strand, 16756185 - 16756234
Alignment:
Q  246 gtcccacaatgctcgagggattagtctctgcagttgcacgcggagaatac 295  Q
    |||||||||||||||||||||||||||| |||||||| ||||||| ||||    
T  16756185 gtcccacaatgctcgagggattagtctccgcagttgcgcgcggaggatac 16756234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 188 - 233
Target Start/End: Original strand, 28724652 - 28724697
Alignment:
Q  188 acccaagagcgcttagatgagatggaacgggcctcttctagcttaa 233  Q
    ||||||||||||||||||||||||||||| | ||||||||||||||    
T  28724652 acccaagagcgcttagatgagatggaacgagtctcttctagcttaa 28724697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 188 - 240
Target Start/End: Original strand, 22022099 - 22022151
Alignment:
Q  188 acccaagagcgcttagatgagatggaacgggcctcttctagcttaaccaaggt 240  Q
    ||||||||||| |||||||||||||||| || ||||||||||||||| |||||    
T  22022099 acccaagagcgtttagatgagatggaacaggtctcttctagcttaactaaggt 22022151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 246 - 311
Target Start/End: Original strand, 15642558 - 15642623
Alignment:
Q  246 gtcccacaatgctcgagggattagtctctgcagttgcacgcggagaatacctggtttacacccaaa 311  Q
    ||||||||||||||||| ||||| |||| |||||||| ||||||| ||||| | |||||| |||||    
T  15642558 gtcccacaatgctcgagagattattctccgcagttgcgcgcggaggatacccgatttacatccaaa 15642623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 188 - 241
Target Start/End: Complemental strand, 17600660 - 17600607
Alignment:
Q  188 acccaagagcgcttagatgagatggaacgggcctcttctagcttaaccaaggtc 241  Q
    |||||| |||| ||||||||||||  ||||| ||||||||||||||||||||||    
T  17600660 acccaaaagcgtttagatgagatgacacgggtctcttctagcttaaccaaggtc 17600607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 190 - 238
Target Start/End: Original strand, 10840998 - 10841046
Alignment:
Q  190 ccaagagcgcttagatgagatggaacgggcctcttctagcttaaccaag 238  Q
    |||||||||||||||||||||| ||| || |||||||| ||||||||||    
T  10840998 ccaagagcgcttagatgagatgaaacaggtctcttctatcttaaccaag 10841046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 246 - 306
Target Start/End: Original strand, 44913212 - 44913272
Alignment:
Q  246 gtcccacaatgctcgagggattagtctctgcagttgcacgcggagaatacctggtttacac 306  Q
    ||||||||||||||||| ||||||||||||||||| | ||| ||| ||||||  |||||||    
T  44913212 gtcccacaatgctcgagagattagtctctgcagttacgcgcagaggatacctaatttacac 44913272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 246 - 285
Target Start/End: Original strand, 12035653 - 12035692
Alignment:
Q  246 gtcccacaatgctcgagggattagtctctgcagttgcacg 285  Q
    |||||||||||||||||||||||||||| ||| |||||||    
T  12035653 gtcccacaatgctcgagggattagtctcagcaattgcacg 12035692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 246 - 296
Target Start/End: Complemental strand, 9781027 - 9780977
Alignment:
Q  246 gtcccacaatgctcgagggattagtctctgcagttgcacgcggagaatacc 296  Q
    ||||||||||||||||||||||||| || | |||||  |||||||||||||    
T  9781027 gtcccacaatgctcgagggattagtatccgtagttgggcgcggagaatacc 9780977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 246 - 296
Target Start/End: Original strand, 22022223 - 22022273
Alignment:
Q  246 gtcccacaatgctcgagggattagtctctgcagttgcacgcggagaatacc 296  Q
    ||||||||||  |||||||||||||||| ||||||||||| |||| |||||    
T  22022223 gtcccacaatattcgagggattagtctccgcagttgcacgtggaggatacc 22022273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 243 - 301
Target Start/End: Original strand, 28724772 - 28724830
Alignment:
Q  243 tgagtcccacaatgctcgagggattagtctctgcagttgcacgcggagaatacctggtt 301  Q
    ||||||| |||||| |||||||||||||||| ||| |||| ||||||| ||||| ||||    
T  28724772 tgagtcctacaatgttcgagggattagtctccgcaattgcgcgcggaggatacccggtt 28724830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 250 - 287
Target Start/End: Complemental strand, 6607728 - 6607691
Alignment:
Q  250 cacaatgctcgagggattagtctctgcagttgcacgcg 287  Q
    |||||||||||||||||||||||| |||| ||||||||    
T  6607728 cacaatgctcgagggattagtctccgcagctgcacgcg 6607691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 263 - 295
Target Start/End: Original strand, 789833 - 789865
Alignment:
Q  263 ggattagtctctgcagttgcacgcggagaatac 295  Q
    ||||||||||| |||||||||||||||||||||    
T  789833 ggattagtctcggcagttgcacgcggagaatac 789865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 191 - 247
Target Start/End: Original strand, 35692467 - 35692523
Alignment:
Q  191 caagagcgcttagatgagatggaacgggcctcttctagcttaaccaaggtcctgagt 247  Q
    |||||||||||||||||||||| | ||| || |||||| |||||||| ||| |||||    
T  35692467 caagagcgcttagatgagatggcatgggtcttttctagtttaaccaatgtcttgagt 35692523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 246 - 282
Target Start/End: Original strand, 49071680 - 49071716
Alignment:
Q  246 gtcccacaatgctcgagggattagtctctgcagttgc 282  Q
    ||||||||||||||||| |||||||||| ||||||||    
T  49071680 gtcccacaatgctcgagagattagtctccgcagttgc 49071716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 54; Significance: 6e-22; HSPs: 25)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 188 - 241
Target Start/End: Original strand, 35972322 - 35972375
Alignment:
Q  188 acccaagagcgcttagatgagatggaacgggcctcttctagcttaaccaaggtc 241  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35972322 acccaagagcgcttagatgagatggaacgggcctcttctagcttaaccaaggtc 35972375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 188 - 244
Target Start/End: Complemental strand, 31307228 - 31307172
Alignment:
Q  188 acccaagagcgcttagatgagatggaacgggcctcttctagcttaaccaaggtcctg 244  Q
    |||||||||| |||||||||||||||||||| |||||||||||||||||||||||||    
T  31307228 acccaagagcacttagatgagatggaacgggtctcttctagcttaaccaaggtcctg 31307172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 246 - 307
Target Start/End: Complemental strand, 31307104 - 31307043
Alignment:
Q  246 gtcccacaatgctcgagggattagtctctgcagttgcacgcggagaatacctggtttacacc 307  Q
    |||||||||||||||||||||||||||| |||||||| ||||||| ||||| ||||||||||    
T  31307104 gtcccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacccggtttacacc 31307043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 191 - 244
Target Start/End: Original strand, 38766071 - 38766124
Alignment:
Q  191 caagagcgcttagatgagatggaacgggcctcttctagcttaaccaaggtcctg 244  Q
    |||||||||||||||||||||||||| | |||||||||||||||||||||||||    
T  38766071 caagagcgcttagatgagatggaacgagtctcttctagcttaaccaaggtcctg 38766124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 188 - 240
Target Start/End: Original strand, 14854584 - 14854636
Alignment:
Q  188 acccaagagcgcttagatgagatggaacgggcctcttctagcttaaccaaggt 240  Q
    ||||||||||||||||||||||||||||||  |||||||||||||||||||||    
T  14854584 acccaagagcgcttagatgagatggaacggttctcttctagcttaaccaaggt 14854636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 188 - 244
Target Start/End: Original strand, 45994501 - 45994557
Alignment:
Q  188 acccaagagcgcttagatgagatggaacgggcctcttctagcttaaccaaggtcctg 244  Q
    ||||||||||| |||||||||||||||| || |||||||||||||||||||||||||    
T  45994501 acccaagagcgtttagatgagatggaacaggtctcttctagcttaaccaaggtcctg 45994557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 246 - 311
Target Start/End: Original strand, 9012373 - 9012438
Alignment:
Q  246 gtcccacaatgctcgagggattagtctctgcagttgcacgcggagaatacctggtttacacccaaa 311  Q
    |||||||||||||||||||||||||||| |||||||| ||||||| ||||| | |||| |||||||    
T  9012373 gtcccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacccgatttatacccaaa 9012438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 188 - 244
Target Start/End: Original strand, 13686580 - 13686636
Alignment:
Q  188 acccaagagcgcttagatgagatggaacgggcctcttctagcttaaccaaggtcctg 244  Q
    ||||||||||||||||||||||||| | ||| ||||||| |||||||||||||||||    
T  13686580 acccaagagcgcttagatgagatggcatgggtctcttcttgcttaaccaaggtcctg 13686636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 188 - 233
Target Start/End: Complemental strand, 25768814 - 25768769
Alignment:
Q  188 acccaagagcgcttagatgagatggaacgggcctcttctagcttaa 233  Q
    ||||||||||||||||||||||||||||||| ||||||||| ||||    
T  25768814 acccaagagcgcttagatgagatggaacgggtctcttctagtttaa 25768769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 187 - 247
Target Start/End: Complemental strand, 38844331 - 38844271
Alignment:
Q  187 cacccaagagcgcttagatgagatggaacgggcctcttctagcttaaccaaggtcctgagt 247  Q
    ||||||| || ||||| ||||||||||||| | |||||||||||||||||||||| |||||    
T  38844331 cacccaaaagtgcttaaatgagatggaacgagtctcttctagcttaaccaaggtcatgagt 38844271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 190 - 241
Target Start/End: Complemental strand, 10199264 - 10199213
Alignment:
Q  190 ccaagagcgcttagatgagatggaacgggcctcttctagcttaaccaaggtc 241  Q
    ||||||| ||||||||||||||||||||| ||||| || |||||||||||||    
T  10199264 ccaagagtgcttagatgagatggaacgggtctcttataacttaaccaaggtc 10199213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 250 - 289
Target Start/End: Complemental strand, 13948626 - 13948587
Alignment:
Q  250 cacaatgctcgagggattagtctctgcagttgcacgcgga 289  Q
    ||||||||||||||||||||||||||||||||| ||||||    
T  13948626 cacaatgctcgagggattagtctctgcagttgcgcgcgga 13948587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 246 - 296
Target Start/End: Original strand, 14854708 - 14854758
Alignment:
Q  246 gtcccacaatgctcgagggattagtctctgcagttgcacgcggagaatacc 296  Q
    |||| ||||| |||||||||||||||||||||||||| ||||||| |||||    
T  14854708 gtccaacaattctcgagggattagtctctgcagttgcgcgcggaggatacc 14854758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 246 - 316
Target Start/End: Original strand, 35972446 - 35972516
Alignment:
Q  246 gtcccacaatgctcgagggattagtctctgcagttgcacgcggagaatacctggtttacacccaaataaat 316  Q
    ||||||| ||| |||||||||||||||| ||||||||  |||||| |||||| ||||||||| ||| ||||    
T  35972446 gtcccactatgttcgagggattagtctccgcagttgcgtgcggaggatacctagtttacaccaaaaaaaat 35972516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 250 - 296
Target Start/End: Original strand, 38766196 - 38766242
Alignment:
Q  250 cacaatgctcgagggattagtctctgcagttgcacgcggagaatacc 296  Q
    |||||||||||||||||||||||| |||||||| ||||||| |||||    
T  38766196 cacaatgctcgagggattagtctccgcagttgcgcgcggaggatacc 38766242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 246 - 311
Target Start/End: Original strand, 33529360 - 33529425
Alignment:
Q  246 gtcccacaatgctcgagggattagtctctgcagttgcacgcggagaatacctggtttacacccaaa 311  Q
    |||||||||| || |||||||||||||| |||||||| | ||||| |||| || ||||||||||||    
T  33529360 gtcccacaatactggagggattagtctccgcagttgcgcacggaggatacttgatttacacccaaa 33529425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 188 - 247
Target Start/End: Complemental strand, 32005313 - 32005254
Alignment:
Q  188 acccaagagcgcttagatgagatggaacgggcctcttctagcttaaccaaggtcctgagt 247  Q
    ||||||||| |||| ||||||||||||  || |||||||| ||||||||| |||||||||    
T  32005313 acccaagagagcttggatgagatggaataggtctcttctaacttaaccaaagtcctgagt 32005254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 190 - 240
Target Start/End: Complemental strand, 35334259 - 35334208
Alignment:
Q  190 ccaagagcgctt-agatgagatggaacgggcctcttctagcttaaccaaggt 240  Q
    |||||||||||| ||||||||||||||  | |||||||||||||||||||||    
T  35334259 ccaagagcgctttagatgagatggaacaagtctcttctagcttaaccaaggt 35334208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 187 - 244
Target Start/End: Original strand, 11140435 - 11140492
Alignment:
Q  187 cacccaagagcgcttagatgagatggaacgggcctcttctagcttaaccaaggtcctg 244  Q
    ||||||||||||||||||| ||||   ||||   ||||||||||||||||||||||||    
T  11140435 cacccaagagcgcttagataagataacacggctatcttctagcttaaccaaggtcctg 11140492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 188 - 237
Target Start/End: Original strand, 51853677 - 51853726
Alignment:
Q  188 acccaagagcgcttagatgagatggaacgggcctcttctagcttaaccaa 237  Q
    ||||||||||||||||||||||| ||| | | |||||||| |||||||||    
T  51853677 acccaagagcgcttagatgagatagaatgagtctcttctaacttaaccaa 51853726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 191 - 247
Target Start/End: Complemental strand, 22189547 - 22189491
Alignment:
Q  191 caagagcgcttagatgagatggaacgggcctcttctagcttaaccaaggtcctgagt 247  Q
    ||||||| |||||||||||||  | | | ||||||||||||||||||||||| ||||    
T  22189547 caagagcacttagatgagatgacatgagtctcttctagcttaaccaaggtccagagt 22189491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 246 - 282
Target Start/End: Complemental strand, 35334136 - 35334100
Alignment:
Q  246 gtcccacaatgctcgagggattagtctctgcagttgc 282  Q
    |||||||||| ||||||||||||||||| ||||||||    
T  35334136 gtcccacaatactcgagggattagtctccgcagttgc 35334100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 188 - 232
Target Start/End: Complemental strand, 37241436 - 37241392
Alignment:
Q  188 acccaagagcgcttagatgagatggaacgggcctcttctagctta 232  Q
    |||||||||||||||||| ||||||||| || |||| ||||||||    
T  37241436 acccaagagcgcttagataagatggaacaggtctctactagctta 37241392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 188 - 244
Target Start/End: Complemental strand, 45695970 - 45695914
Alignment:
Q  188 acccaagagcgcttagatgagatggaacgggcctcttctagcttaaccaaggtcctg 244  Q
    |||||||| |||||||||||||| ||||| | || |||||| || ||||||||||||    
T  45695970 acccaagaacgcttagatgagatagaacgagtcttttctagtttgaccaaggtcctg 45695914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 250 - 286
Target Start/End: Original strand, 45994629 - 45994665
Alignment:
Q  250 cacaatgctcgagggattagtctctgcagttgcacgc 286  Q
    ||||||||||||| |||||||||| ||||||||||||    
T  45994629 cacaatgctcgagagattagtctccgcagttgcacgc 45994665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 50; Significance: 1e-19; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 246 - 311
Target Start/End: Original strand, 25224802 - 25224867
Alignment:
Q  246 gtcccacaatgctcgagggattagtctctgcagttgcacgcggagaatacctggtttacacccaaa 311  Q
    |||||||||||||| ||||||||||||| |||||||||||||||| ||||| ||||||||||||||    
T  25224802 gtcccacaatgctcaagggattagtctccgcagttgcacgcggaggatacccggtttacacccaaa 25224867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 188 - 244
Target Start/End: Original strand, 25224678 - 25224734
Alignment:
Q  188 acccaagagcgcttagatgagatggaacgggcctcttctagcttaaccaaggtcctg 244  Q
    |||||||||||||||||||||||| |||||| |||||||||||||||||||||||||    
T  25224678 acccaagagcgcttagatgagatgaaacgggtctcttctagcttaaccaaggtcctg 25224734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 188 - 244
Target Start/End: Complemental strand, 30996127 - 30996071
Alignment:
Q  188 acccaagagcgcttagatgagatggaacgggcctcttctagcttaaccaaggtcctg 244  Q
    ||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||    
T  30996127 acccaagagcgcttagatgagatggaacgggtctcttctatcttaaccaaggtcctg 30996071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 246 - 307
Target Start/End: Original strand, 8757447 - 8757508
Alignment:
Q  246 gtcccacaatgctcgagggattagtctctgcagttgcacgcggagaatacctggtttacacc 307  Q
    |||||||||||||||||||||||||||| |||||||| ||||||| ||||| ||||||||||    
T  8757447 gtcccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacccggtttacacc 8757508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 246 - 307
Target Start/End: Complemental strand, 30996003 - 30995942
Alignment:
Q  246 gtcccacaatgctcgagggattagtctctgcagttgcacgcggagaatacctggtttacacc 307  Q
    |||||||||||||||||||||||||||| |||||||| ||||||| ||| ||||||||||||    
T  30996003 gtcccacaatgctcgagggattagtctccgcagttgcgcgcggaggatatctggtttacacc 30995942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 188 - 240
Target Start/End: Original strand, 38088614 - 38088666
Alignment:
Q  188 acccaagagcgcttagatgagatggaacgggcctcttctagcttaaccaaggt 240  Q
    |||||||||||||||||||||||| |||||| |||||||||||||||||||||    
T  38088614 acccaagagcgcttagatgagatgaaacgggtctcttctagcttaaccaaggt 38088666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 187 - 241
Target Start/End: Complemental strand, 48204474 - 48204420
Alignment:
Q  187 cacccaagagcgcttagatgagatggaacgggcctcttctagcttaaccaaggtc 241  Q
    |||||||||| ||||||||||||||||||| | ||||||||||||||||||||||    
T  48204474 cacccaagagtgcttagatgagatggaacgagtctcttctagcttaaccaaggtc 48204420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 190 - 247
Target Start/End: Original strand, 38331109 - 38331166
Alignment:
Q  190 ccaagagcgcttagatgagatggaacgggcctcttctagcttaaccaaggtcctgagt 247  Q
    |||||||||||||||||||||||| |||| |||||||| ||||||||| |||||||||    
T  38331109 ccaagagcgcttagatgagatggatcgggtctcttctaacttaaccaatgtcctgagt 38331166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 243 - 306
Target Start/End: Original strand, 27763821 - 27763884
Alignment:
Q  243 tgagtcccacaatgctcgagggattagtctctgcagttgcacgcggagaatacctggtttacac 306  Q
    ||||||||||||||||||||||||||||||| |||||||| ||| ||| ||| | |||||||||    
T  27763821 tgagtcccacaatgctcgagggattagtctccgcagttgcgcgcagaggatatccggtttacac 27763884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 188 - 238
Target Start/End: Original strand, 14352533 - 14352583
Alignment:
Q  188 acccaagagcgcttagatgagatggaacgggcctcttctagcttaaccaag 238  Q
    ||||||||||||||||||||||||||||  | |||||||||||||||||||    
T  14352533 acccaagagcgcttagatgagatggaacaagtctcttctagcttaaccaag 14352583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 249 - 311
Target Start/End: Original strand, 46725530 - 46725592
Alignment:
Q  249 ccacaatgctcgagggattagtctctgcagttgcacgcggagaatacctggtttacacccaaa 311  Q
    |||||||||| ||||||||||||||| ||||| | ||||||| |||| |||||||||||||||    
T  46725530 ccacaatgcttgagggattagtctcttcagttacgcgcggaggatacttggtttacacccaaa 46725592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 188 - 244
Target Start/End: Original strand, 27763702 - 27763756
Alignment:
Q  188 acccaagagcgcttagatgagatggaacgggcctcttctagcttaaccaaggtcctg 244  Q
    ||||||||||||||||||||||| |||||||  ||| ||||||||||||||||||||    
T  27763702 acccaagagcgcttagatgagatagaacggg--tctcctagcttaaccaaggtcctg 27763756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 246 - 311
Target Start/End: Original strand, 38331231 - 38331296
Alignment:
Q  246 gtcccacaatgctcgagggattagtctctgcagttgcacgcggagaatacctggtttacacccaaa 311  Q
    ||||||||||| | |||||||||||||| |||||||||||||||| ||||| | |||||| |||||    
T  38331231 gtcccacaatgtttgagggattagtctccgcagttgcacgcggaggatacccgatttacaaccaaa 38331296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 190 - 240
Target Start/End: Complemental strand, 46604720 - 46604670
Alignment:
Q  190 ccaagagcgcttagatgagatggaacgggcctcttctagcttaaccaaggt 240  Q
    ||||||||||||||||||||||||||| | ||||| || ||||||||||||    
T  46604720 ccaagagcgcttagatgagatggaacgagtctcttataacttaaccaaggt 46604670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 249 - 311
Target Start/End: Complemental strand, 48204346 - 48204284
Alignment:
Q  249 ccacaatgctcgagggattagtctctgcagttgcacgcggagaatacctggtttacacccaaa 311  Q
    ||||||||||| |||||||||| || |||||||| ||||||| ||||| | ||||||||||||    
T  48204346 ccacaatgctcaagggattagtttccgcagttgcgcgcggaggatacccgatttacacccaaa 48204284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 250 - 303
Target Start/End: Original strand, 55123204 - 55123257
Alignment:
Q  250 cacaatgctcgagggattagtctctgcagttgcacgcggagaatacctggttta 303  Q
    |||||||||||||||||||||||  |||||||| ||||||| ||||||| ||||    
T  55123204 cacaatgctcgagggattagtcttcgcagttgcgcgcggaggatacctgattta 55123257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 251 - 307
Target Start/End: Complemental strand, 40318482 - 40318426
Alignment:
Q  251 acaatgctcgagggattagtctctgcagttgcacgcggagaatacctggtttacacc 307  Q
    |||||| |||||||||||||||| |||||||| ||||||| ||||| | ||||||||    
T  40318482 acaatgttcgagggattagtctccgcagttgcgcgcggaggatacccgttttacacc 40318426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 191 - 234
Target Start/End: Original strand, 42514586 - 42514629
Alignment:
Q  191 caagagcgcttagatgagatggaacgggcctcttctagcttaac 234  Q
    ||||||||||||||||||||| |||| | |||||||||||||||    
T  42514586 caagagcgcttagatgagatgaaacgtgtctcttctagcttaac 42514629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 251 - 296
Target Start/End: Original strand, 39950320 - 39950365
Alignment:
Q  251 acaatgctcgagggattagtctctgcagttgcacgcggagaatacc 296  Q
    ||||||||||| ||||||||||| ||||||||| |||||| |||||    
T  39950320 acaatgctcgaaggattagtctccgcagttgcatgcggaggatacc 39950365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 250 - 306
Target Start/End: Original strand, 22288342 - 22288398
Alignment:
Q  250 cacaatgctcgagggattagtctctgcagttgcacgcggagaatacctggtttacac 306  Q
    |||||| ||| ||| |||||||||||||||||  ||||||| ||||| |||||||||    
T  22288342 cacaatactcaaggaattagtctctgcagttgtgcgcggaggatacccggtttacac 22288398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 49; Significance: 5e-19; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 243 - 307
Target Start/End: Original strand, 10592027 - 10592091
Alignment:
Q  243 tgagtcccacaatgctcgagggattagtctctgcagttgcacgcggagaatacctggtttacacc 307  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||| ||||| | ||||||||    
T  10592027 tgagtcccacaatgctcgagggattagtctctgcagttgcgcgcggaggatacccgatttacacc 10592091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 188 - 247
Target Start/End: Complemental strand, 28023605 - 28023546
Alignment:
Q  188 acccaagagcgcttagatgagatggaacgggcctcttctagcttaaccaaggtcctgagt 247  Q
    ||||||||||||||||||||||||||||||  |||||||||||||||||| |||||||||    
T  28023605 acccaagagcgcttagatgagatggaacggatctcttctagcttaaccaatgtcctgagt 28023546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 188 - 244
Target Start/End: Original strand, 10591906 - 10591962
Alignment:
Q  188 acccaagagcgcttagatgagatggaacgggcctcttctagcttaaccaaggtcctg 244  Q
    |||||||||| |||||||||||||||||||| ||||||||| |||||||||||||||    
T  10591906 acccaagagcacttagatgagatggaacgggtctcttctagattaaccaaggtcctg 10591962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 246 - 307
Target Start/End: Complemental strand, 5123536 - 5123475
Alignment:
Q  246 gtcccacaatgctcgagggattagtctctgcagttgcacgcggagaatacctggtttacacc 307  Q
    |||||||||||||||||||||||||||| |||||||| ||||||| |||||  |||||||||    
T  5123536 gtcccacaatgctcgagggattagtctccgcagttgcgcgcggaggataccctgtttacacc 5123475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 243 - 311
Target Start/End: Original strand, 25983765 - 25983833
Alignment:
Q  243 tgagtcccacaatgctcgagggattagtctctgcagttgcacgcggagaatacctggtttacacccaaa 311  Q
    ||||||||| |||| ||||| |||||||||| |||||||||| ||||| ||||| ||||||||||||||    
T  25983765 tgagtcccataatgttcgagtgattagtctccgcagttgcacacggaggatacccggtttacacccaaa 25983833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 246 - 307
Target Start/End: Complemental strand, 22188036 - 22187975
Alignment:
Q  246 gtcccacaatgctcgagggattagtctctgcagttgcacgcggagaatacctggtttacacc 307  Q
    |||||||||| || |||||||||||||| |||||||| ||||||| ||||| || |||||||    
T  22188036 gtcccacaatactagagggattagtctccgcagttgcgcgcggaggatacccggcttacacc 22187975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 250 - 303
Target Start/End: Complemental strand, 30785020 - 30784967
Alignment:
Q  250 cacaatgctcgagggattagtctctgcagttgcacgcggagaatacctggttta 303  Q
    ||||||| || ||||||||||||| |||||||| ||||||| ||||||||||||    
T  30785020 cacaatgttcaagggattagtctccgcagttgcgcgcggaggatacctggttta 30784967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 247 - 306
Target Start/End: Original strand, 31113438 - 31113497
Alignment:
Q  247 tcccacaatgctcgagggattagtctctgcagttgcacgcggagaatacctggtttacac 306  Q
    ||||||||| ||||||||||||||||| |||||||| |||| || ||||| | |||||||    
T  31113438 tcccacaatactcgagggattagtctccgcagttgcgcgcgaaggatacccgatttacac 31113497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 188 - 233
Target Start/End: Complemental strand, 30785148 - 30785103
Alignment:
Q  188 acccaagagcgcttagatgagatggaacgggcctcttctagcttaa 233  Q
    ||||||||||  ||||||||||||||||| | ||||||||||||||    
T  30785148 acccaagagcatttagatgagatggaacgagtctcttctagcttaa 30785103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 246 - 282
Target Start/End: Original strand, 2760309 - 2760345
Alignment:
Q  246 gtcccacaatgctcgagggattagtctctgcagttgc 282  Q
    |||||||||  ||||||||||||||||||||||||||    
T  2760309 gtcccacaagactcgagggattagtctctgcagttgc 2760345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 46; Significance: 3e-17; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 246 - 311
Target Start/End: Original strand, 21910308 - 21910372
Alignment:
Q  246 gtcccacaatgctcgagggattagtctctgcagttgcacgcggagaatacctggtttacacccaaa 311  Q
    |||||||||| ||| ||||||||||||| |||||||||||||||| ||||||||||||||||||||    
T  21910308 gtcccacaatactc-agggattagtctccgcagttgcacgcggaggatacctggtttacacccaaa 21910372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 192 - 247
Target Start/End: Original strand, 12411131 - 12411186
Alignment:
Q  192 aagagcgcttagatgagatggaacgggcctcttctagcttaaccaaggtcctgagt 247  Q
    ||||| |||||||||||||||||| || |||||||| |||||||||||||||||||    
T  12411131 aagagtgcttagatgagatggaacaggtctcttctaacttaaccaaggtcctgagt 12411186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 246 - 311
Target Start/End: Complemental strand, 12836935 - 12836870
Alignment:
Q  246 gtcccacaatgctcgagggattagtctctgcagttgcacgcggagaatacctggtttacacccaaa 311  Q
    ||||||||||||| ||||||||||||||  ||||||| ||||||| ||||| |||||| |||||||    
T  12836935 gtcccacaatgcttgagggattagtctccccagttgcgcgcggaggatacccggtttatacccaaa 12836870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 191 - 240
Target Start/End: Original strand, 423637 - 423686
Alignment:
Q  191 caagagcgcttagatgagatggaacgggcctcttctagcttaaccaaggt 240  Q
    ||||||||||||||||||||||||| |  ||||||||| |||||||||||    
T  423637 caagagcgcttagatgagatggaacagatctcttctagtttaaccaaggt 423686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 188 - 244
Target Start/End: Original strand, 21910184 - 21910240
Alignment:
Q  188 acccaagagcgcttagatgagatggaacgggcctcttctagcttaaccaaggtcctg 244  Q
    ||||||||||| |||||||||||| |||  | ||||||||||||||||||| |||||    
T  21910184 acccaagagcgtttagatgagatgaaacaagtctcttctagcttaaccaagatcctg 21910240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 190 - 237
Target Start/End: Complemental strand, 15614733 - 15614686
Alignment:
Q  190 ccaagagcgcttagatgagatggaacgggcctcttctagcttaaccaa 237  Q
    ||||||||||||| ||||||||||||| | |||||||| |||||||||    
T  15614733 ccaagagcgcttatatgagatggaacgagtctcttctaacttaaccaa 15614686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 245 - 303
Target Start/End: Original strand, 12411250 - 12411308
Alignment:
Q  245 agtcccacaatgctcgagggattagtctctgcagttgcacgcggagaatacctggttta 303  Q
    |||||||||||||| ||||||||||||||  ||||||| ||||| | ||||| ||||||    
T  12411250 agtcccacaatgcttgagggattagtctccacagttgcgcgcgggggatacccggttta 12411308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 249 - 282
Target Start/End: Original strand, 9536873 - 9536906
Alignment:
Q  249 ccacaatgctcgagggattagtctctgcagttgc 282  Q
    ||||||||||||||||||||||||| ||||||||    
T  9536873 ccacaatgctcgagggattagtctccgcagttgc 9536906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 204 - 241
Target Start/End: Complemental strand, 21029129 - 21029092
Alignment:
Q  204 atgagatggaacgggcctcttctagcttaaccaaggtc 241  Q
    ||||||||| ||||| ||||||||||||||||||||||    
T  21029129 atgagatggcacgggtctcttctagcttaaccaaggtc 21029092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 243 - 296
Target Start/End: Original strand, 28099343 - 28099396
Alignment:
Q  243 tgagtcccacaatgctcgagggattagtctctgcagttgcacgcggagaatacc 296  Q
    ||||| ||| ||||||||||||||||||||| ||||||||  |||||| |||||    
T  28099343 tgagttccataatgctcgagggattagtctccgcagttgcgagcggaggatacc 28099396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 188 - 241
Target Start/End: Original strand, 31412102 - 31412155
Alignment:
Q  188 acccaagagcgcttagatgagatggaacgggcctcttctagcttaaccaaggtc 241  Q
    |||||||||| |||||||||||||||||||| ||||  ||| ||||| ||||||    
T  31412102 acccaagagcacttagatgagatggaacgggtctctcatagtttaactaaggtc 31412155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 191 - 247
Target Start/End: Original strand, 278374 - 278430
Alignment:
Q  191 caagagcgcttagatgagatggaacgggcctcttctagcttaaccaaggtcctgagt 247  Q
    |||||||| ||||||||||||  ||| | ||||||||||||||| |||||| |||||    
T  278374 caagagcgtttagatgagatgacacgagtctcttctagcttaactaaggtcttgagt 278430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 3e-17; HSPs: 25)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 188 - 241
Target Start/End: Complemental strand, 42745278 - 42745225
Alignment:
Q  188 acccaagagcgcttagatgagatggaacgggcctcttctagcttaaccaaggtc 241  Q
    ||||||||||||||||||||||||||||||| ||||| ||||||||||||||||    
T  42745278 acccaagagcgcttagatgagatggaacgggtctcttatagcttaaccaaggtc 42745225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 192 - 244
Target Start/End: Original strand, 5394380 - 5394432
Alignment:
Q  192 aagagcgcttagatgagatggaacgggcctcttctagcttaaccaaggtcctg 244  Q
    ||||||||||||||||||||||||| | |||||||||||||||||||||||||    
T  5394380 aagagcgcttagatgagatggaacgagtctcttctagcttaaccaaggtcctg 5394432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 188 - 244
Target Start/End: Complemental strand, 37568889 - 37568833
Alignment:
Q  188 acccaagagcgcttagatgagatggaacgggcctcttctagcttaaccaaggtcctg 244  Q
    |||||||||| ||||||||||||||||||||  ||||||||||||||||||||||||    
T  37568889 acccaagagcacttagatgagatggaacgggtttcttctagcttaaccaaggtcctg 37568833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 188 - 244
Target Start/End: Complemental strand, 44732735 - 44732679
Alignment:
Q  188 acccaagagcgcttagatgagatggaacgggcctcttctagcttaaccaaggtcctg 244  Q
    |||||||||| |||||||||||||||||||| ||||| |||||||||||||||||||    
T  44732735 acccaagagcacttagatgagatggaacgggtctcttatagcttaaccaaggtcctg 44732679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 188 - 247
Target Start/End: Original strand, 28365928 - 28365987
Alignment:
Q  188 acccaagagcgcttagatgagatggaacgggcctcttctagcttaaccaaggtcctgagt 247  Q
    ||||||||||||||||||||||||||||| | |||||||| ||||||||||||| |||||    
T  28365928 acccaagagcgcttagatgagatggaacgcgtctcttctaacttaaccaaggtcgtgagt 28365987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 246 - 311
Target Start/End: Original strand, 5394499 - 5394564
Alignment:
Q  246 gtcccacaatgctcgagggattagtctctgcagttgcacgcggagaatacctggtttacacccaaa 311  Q
    ||||||||||||||| |||||||||||| |||||||||||||||| ||||  | ||||||||||||    
T  5394499 gtcccacaatgctcgtgggattagtctccgcagttgcacgcggaggatactcgatttacacccaaa 5394564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 188 - 241
Target Start/End: Complemental strand, 12133392 - 12133339
Alignment:
Q  188 acccaagagcgcttagatgagatggaacgggcctcttctagcttaaccaaggtc 241  Q
    ||||||||||||||||||||||||||||| | |||||||||||||| |||||||    
T  12133392 acccaagagcgcttagatgagatggaacgagtctcttctagcttaatcaaggtc 12133339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 188 - 245
Target Start/End: Original strand, 17981477 - 17981534
Alignment:
Q  188 acccaagagcgcttagatgagatggaacgggcctcttctagcttaaccaaggtcctga 245  Q
    |||||| |||||||||||||||||||||| | |||||||||||||||||| |||||||    
T  17981477 acccaatagcgcttagatgagatggaacgagtctcttctagcttaaccaaagtcctga 17981534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 192 - 244
Target Start/End: Complemental strand, 18105520 - 18105468
Alignment:
Q  192 aagagcgcttagatgagatggaacgggcctcttctagcttaaccaaggtcctg 244  Q
    ||||||||||| ||||||||||||| | |||||||||||||||||||||||||    
T  18105520 aagagcgcttatatgagatggaacgagtctcttctagcttaaccaaggtcctg 18105468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 246 - 303
Target Start/End: Original strand, 17981600 - 17981657
Alignment:
Q  246 gtcccacaatgctcgagggattagtctctgcagttgcacgcggagaatacctggttta 303  Q
    ||||||||||||||||| |||||||||| |||||||| ||||||| ||||| ||||||    
T  17981600 gtcccacaatgctcgagagattagtctccgcagttgcgcgcggaggatacccggttta 17981657  T

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Target: chr2; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 188 - 241
Target Start/End: Complemental strand, 31579391 - 31579338
Alignment:
Q  188 acccaagagcgcttagatgagatggaacgggcctcttctagcttaaccaaggtc 241  Q
    |||||||||| ||||||||||||| |||||| |||||||||||||| |||||||    
T  31579391 acccaagagcacttagatgagatgtaacgggtctcttctagcttaatcaaggtc 31579338  T

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Target: chr2; HSP #12
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 245 - 305
Target Start/End: Complemental strand, 31579268 - 31579208
Alignment:
Q  245 agtcccacaatgctcgagggattagtctctgcagttgcacgcggagaatacctggtttaca 305  Q
    ||||||||||||||||||| |||||| || |||||||| ||||||| ||||| ||||||||    
T  31579268 agtcccacaatgctcgaggaattagtttccgcagttgcgcgcggaggatacccggtttaca 31579208  T

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Target: chr2; HSP #13
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 249 - 305
Target Start/End: Complemental strand, 42745151 - 42745095
Alignment:
Q  249 ccacaatgctcgagggattagtctctgcagttgcacgcggagaatacctggtttaca 305  Q
    |||||||| |||||||||||||||| |||||||| ||||||| ||||| ||||||||    
T  42745151 ccacaatggtcgagggattagtctcagcagttgcgcgcggaggatacccggtttaca 42745095  T

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Target: chr2; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 190 - 241
Target Start/End: Complemental strand, 7020518 - 7020467
Alignment:
Q  190 ccaagagcgcttagatgagatggaacgggcctcttctagcttaaccaaggtc 241  Q
    ||||||||| ||||||||||| | ||||| ||||||||||||||||||||||    
T  7020518 ccaagagcgtttagatgagattgcacgggtctcttctagcttaaccaaggtc 7020467  T

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Target: chr2; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 246 - 296
Target Start/End: Original strand, 25423847 - 25423897
Alignment:
Q  246 gtcccacaatgctcgagggattagtctctgcagttgcacgcggagaatacc 296  Q
    |||||||||||||||||||||||||||| |||||||| || |||| |||||    
T  25423847 gtcccacaatgctcgagggattagtctcagcagttgcgcgtggaggatacc 25423897  T

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Target: chr2; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 191 - 244
Target Start/End: Original strand, 993736 - 993789
Alignment:
Q  191 caagagcgcttagatgagatggaacgggcctcttctagcttaaccaaggtcctg 244  Q
    |||||||||||||||||||||  ||| | ||||| |||||||||||||||||||    
T  993736 caagagcgcttagatgagatgacacgtgtctcttatagcttaaccaaggtcctg 993789  T

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Target: chr2; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 246 - 307
Target Start/End: Complemental strand, 37092233 - 37092172
Alignment:
Q  246 gtcccacaatgctcgagggattagtctctgcagttgcacgcggagaatacctggtttacacc 307  Q
    |||||||| ||||||||||||||||||| |||||||  | ||||| ||||| ||||||||||    
T  37092233 gtcccacagtgctcgagggattagtctccgcagttgtgcacggaggatacccggtttacacc 37092172  T

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Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 243 - 307
Target Start/End: Complemental strand, 37180042 - 37179978
Alignment:
Q  243 tgagtcccacaatgctcgagggattagtctctgcagttgcacgcggagaatacctggtttacacc 307  Q
    ||||||||||||| ||||||||||||||||  ||| |||| ||||||| ||||| | ||||||||    
T  37180042 tgagtcccacaatactcgagggattagtctacgcacttgcgcgcggaggatacccgatttacacc 37179978  T

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Target: chr2; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 192 - 248
Target Start/End: Complemental strand, 40688888 - 40688832
Alignment:
Q  192 aagagcgcttagatgagatggaacgggcctcttctagcttaaccaaggtcctgagtc 248  Q
    |||||||||||| ||||||||||  || |||||||| ||||||||| ||||||||||    
T  40688888 aagagcgcttaggtgagatggaattggtctcttctaacttaaccaaagtcctgagtc 40688832  T

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Target: chr2; HSP #20
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 243 - 282
Target Start/End: Complemental strand, 14121923 - 14121884
Alignment:
Q  243 tgagtcccacaatgctcgagggattagtctctgcagttgc 282  Q
    |||||||||||||||||||||||||||||| || ||||||    
T  14121923 tgagtcccacaatgctcgagggattagtctatgaagttgc 14121884  T

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Target: chr2; HSP #21
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 188 - 247
Target Start/End: Complemental strand, 19252654 - 19252595
Alignment:
Q  188 acccaagagcgcttagatgagatggaacgggcctcttctagcttaaccaaggtcctgagt 247  Q
    ||||||||||| ||||||||||||  ||||| ||||| ||||||||||||  ||||||||    
T  19252654 acccaagagcgtttagatgagatgatacgggtctcttttagcttaaccaaactcctgagt 19252595  T

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Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 188 - 237
Target Start/End: Complemental strand, 9438298 - 9438249
Alignment:
Q  188 acccaagagcgcttagatgagatggaacgggcctcttctagcttaaccaa 237  Q
    ||||||||||| |||||||||||||||||   ||||| ||||||||||||    
T  9438298 acccaagagcgtttagatgagatggaacgaatctcttttagcttaaccaa 9438249  T

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Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 243 - 303
Target Start/End: Complemental strand, 18105403 - 18105344
Alignment:
Q  243 tgagtcccacaatgctcgagggattagtctctgcagttgcacgcggagaatacctggttta 303  Q
    |||||| |||||| ||||||||||||||||| |||||||| ||||||| ||| | ||||||    
T  18105403 tgagtctcacaatactcgagggattagtctc-gcagttgcgcgcggaggatatccggttta 18105344  T

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Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 188 - 240
Target Start/End: Original strand, 33756956 - 33757008
Alignment:
Q  188 acccaagagcgcttagatgagatggaacgggcctcttctagcttaaccaaggt 240  Q
    |||||||| | |||||||||||||  ||||| |||||||||||||| ||||||    
T  33756956 acccaagaacacttagatgagatgacacgggtctcttctagcttaatcaaggt 33757008  T

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Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 243 - 303
Target Start/End: Original strand, 38464055 - 38464115
Alignment:
Q  243 tgagtcccacaatgctcgagggattagtctctgcagttgcacgcggagaatacctggttta 303  Q
    ||||||||||||| |||||| ||||||||| |||| |||| || |||| ||||||| ||||    
T  38464055 tgagtcccacaatactcgagtgattagtctttgcaattgcgcgtggaggatacctgattta 38464115  T

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Target: scaffold0020 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 188 - 241
Target Start/End: Original strand, 167834 - 167887
Alignment:
Q  188 acccaagagcgcttagatgagatggaacgggcctcttctagcttaaccaaggtc 241  Q
    |||||||||||||||||||||||| |||||| |||||||||||||| |||||||    
T  167834 acccaagagcgcttagatgagatgaaacgggtctcttctagcttaatcaaggtc 167887  T

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Target: scaffold0182 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 246 - 307
Target Start/End: Original strand, 26434 - 26495
Alignment:
Q  246 gtcccacaatgctcgagggattagtctctgcagttgcacgcggagaatacctggtttacacc 307  Q
    ||||||||||| ||||| |||||||||| |||||||| ||||||| ||||| ||||||||||    
T  26434 gtcccacaatgttcgagagattagtctccgcagttgcgcgcggaggatacccggtttacacc 26495  T

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Target: scaffold0182; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 210 - 244
Target Start/End: Original strand, 26332 - 26366
Alignment:
Q  210 tggaacgggcctcttctagcttaaccaaggtcctg 244  Q
    ||||||||| |||||||||||||||||||||||||    
T  26332 tggaacgggtctcttctagcttaaccaaggtcctg 26366  T

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Target: scaffold0013 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 246 - 306
Target Start/End: Complemental strand, 29190 - 29130
Alignment:
Q  246 gtcccacaatgctcgagggattagtctctgcagttgcacgcggagaatacctggtttacac 306  Q
    ||||||||||||||| ||||||||||||  ||||||| ||||||| ||||| | |||||||    
T  29190 gtcccacaatgctcgtgggattagtctccacagttgcgcgcggaggatacccgatttacac 29130  T

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Target: scaffold0009 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 200 - 240
Target Start/End: Complemental strand, 32414 - 32374
Alignment:
Q  200 ttagatgagatggaacgggcctcttctagcttaaccaaggt 240  Q
    |||||| |||||||||||| |||||||||||| ||||||||    
T  32414 ttagataagatggaacgggtctcttctagcttcaccaaggt 32374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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