View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3713_low_12 (Length: 239)
Name: NF3713_low_12
Description: NF3713
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3713_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 45253786 - 45254005
Alignment:
| Q |
1 |
tttctttcgagatatataaccacatttccagaaatgatagtccaaagaatattgcatccaaatattgtataatagatttaattgatatcaccgtgtgtaa |
100 |
Q |
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| T |
45253786 |
tttctttcgagatatataaccacatttccagaaatgatagtccaaagaatactgcatccaaatattgtataatagatttaattgatatcaccgtgtgtaa |
45253885 |
T |
|
| Q |
101 |
acattttttacactgtcaatcaattataatcgttagatcatcataatcattcatgtgtgtgggaatgttattcaaattgatatggtgtgagaaagcaagt |
200 |
Q |
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| T |
45253886 |
acattttttacactgtcaatcaattataatcgttagatcatcataatcattcatgtgtgtggaaatgttattcaaattgaaatggtgtgagaaagcaagt |
45253985 |
T |
|
| Q |
201 |
ttccactgttatgtcctggg |
220 |
Q |
| |
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| T |
45253986 |
ttccactgttatgtcctggg |
45254005 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 95 - 135
Target Start/End: Complemental strand, 7601478 - 7601438
Alignment:
| Q |
95 |
gtgtaaacattttttacactgtcaatcaattataatcgtta |
135 |
Q |
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| T |
7601478 |
gtgtaaagattttttacactgtcaatcaatcataatcgtta |
7601438 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 104 - 141
Target Start/End: Complemental strand, 33817400 - 33817363
Alignment:
| Q |
104 |
ttttttacactgtcaatcaattataatcgttagatcat |
141 |
Q |
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| T |
33817400 |
ttttttacgctgtcaatcaatcataatcgttagatcat |
33817363 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 104 - 141
Target Start/End: Complemental strand, 4076107 - 4076070
Alignment:
| Q |
104 |
ttttttacactgtcaatcaattataatcgttagatcat |
141 |
Q |
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| T |
4076107 |
ttttttacactatcaatcaatcataatcgttagatcat |
4076070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 105 - 133
Target Start/End: Original strand, 19116268 - 19116296
Alignment:
| Q |
105 |
tttttacactgtcaatcaattataatcgt |
133 |
Q |
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| T |
19116268 |
tttttacactgtcaatcaattataatcgt |
19116296 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 135
Target Start/End: Original strand, 8960974 - 8961014
Alignment:
| Q |
95 |
gtgtaaacattttttacactgtcaatcaattataatcgtta |
135 |
Q |
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| T |
8960974 |
gtgtaaagattttttacactgtcaatcaatcatgatcgtta |
8961014 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 131
Target Start/End: Original strand, 30812620 - 30812656
Alignment:
| Q |
95 |
gtgtaaacattttttacactgtcaatcaattataatc |
131 |
Q |
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| T |
30812620 |
gtgtaaacatttattacactgtcaattaattataatc |
30812656 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 106 - 138
Target Start/End: Original strand, 35169947 - 35169979
Alignment:
| Q |
106 |
ttttacactgtcaatcaattataatcgttagat |
138 |
Q |
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| T |
35169947 |
ttttacactgtcaatcaattgtaatcgttagat |
35169979 |
T |
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