View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3713_low_13 (Length: 235)
Name: NF3713_low_13
Description: NF3713
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3713_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 230; Significance: 1e-127; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 26832564 - 26832793
Alignment:
| Q |
1 |
aaattaccaaacttccagcgagcctgaacaagaccaatatcaggattattaacaaggaaagggatggttcgccaaagaaaatcaggttctggttgaaaat |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26832564 |
aaattaccaaacttccagcgagcctgaacaagaccaatatcaggattattaacaaggaaagggatggttcgccaaagaaaatcaggttctggttgaaaat |
26832663 |
T |
|
| Q |
101 |
cagcatcaaagatagcaacataatcacattgtttcacatagctatgtttcattccctcctttaatgcacctgctttgtaaccatttctattgtccctaac |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26832664 |
cagcatcaaagatagcaacataatcacattgtttcacatagctatgtttcattccctcctttaatgcacctgctttgtaaccatttctattgtccctaac |
26832763 |
T |
|
| Q |
201 |
ttcatactttatattcacacctttgcttct |
230 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
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|
| T |
26832764 |
ttcatactttatattcacacctttgcttct |
26832793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 2 - 225
Target Start/End: Original strand, 26785847 - 26786070
Alignment:
| Q |
2 |
aattaccaaacttccagcgagcctgaacaagaccaatatcaggattattaacaaggaaagggatggttcgccaaagaaaatcaggttctggttgaaaatc |
101 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||| ||||||||||| ||||||||||| |||||| | || || ||||||||||| ||||||||||| |
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| T |
26785847 |
aattaccaaacttccagcgagcctgaacgagaccaatttcaggattattgacaaggaaaggaatggtttggcagaggaaatcaggttcaggttgaaaatc |
26785946 |
T |
|
| Q |
102 |
agcatcaaagatagcaacataatcacattgtttcacatagctatgtttcattccctcctttaatgcacctgctttgtaaccatttctattgtccctaact |
201 |
Q |
| |
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|||||||||||| |||||||| ||||||||| |||| |||||||||||||||||||||| ||||| |||||||| |||||||| |||||||||||| |
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| T |
26785947 |
agcatcaaagatggcaacatattcacattgtaggacatgactatgtttcattccctcctttagagcaccagctttgtacccatttctgttgtccctaact |
26786046 |
T |
|
| Q |
202 |
tcatactttatattcacacctttg |
225 |
Q |
| |
|
||||||||||| |||||||||||| |
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| T |
26786047 |
tcatactttatgttcacacctttg |
26786070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 2 - 225
Target Start/End: Original strand, 26822488 - 26822711
Alignment:
| Q |
2 |
aattaccaaacttccagcgagcctgaacaagaccaatatcaggattattaacaaggaaagggatggttcgccaaagaaaatcaggttctggttgaaaatc |
101 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||| ||||||||||| ||||| |||||||| ||||| | ||||| |||||||| ||||||||||| |
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| T |
26822488 |
aattaccaaacttccagcgagcctgaacgagaccaatttcaggattattgacaagaaaagggatcgttcggcggagaaagtcaggttcaggttgaaaatc |
26822587 |
T |
|
| Q |
102 |
agcatcaaagatagcaacataatcacattgtttcacatagctatgtttcattccctcctttaatgcacctgctttgtaaccatttctattgtccctaact |
201 |
Q |
| |
|
|||||||||||| |||||||| ||||||||| |||| |||||||||||||||||||||| ||||| |||||||| |||||||| |||||||||||| |
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| T |
26822588 |
agcatcaaagatggcaacatattcacattgtaggacatgactatgtttcattccctcctttagagcaccagctttgtacccatttctgttgtccctaact |
26822687 |
T |
|
| Q |
202 |
tcatactttatattcacacctttg |
225 |
Q |
| |
|
||||||||||| |||||||||||| |
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|
| T |
26822688 |
tcatactttatgttcacacctttg |
26822711 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 5 - 225
Target Start/End: Original strand, 26791590 - 26791810
Alignment:
| Q |
5 |
taccaaacttccagcgagcctgaacaagaccaatatcaggattattaacaaggaaagggatggttcgccaaagaaaatcaggttctggttgaaaatcagc |
104 |
Q |
| |
|
||||||||||||||||||| ||||| |||||||| ||||||||||| ||||| |||||||||||||| |||||||||||||| |||||||||||||| |
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|
| T |
26791590 |
taccaaacttccagcgagcttgaacgagaccaatctcaggattattgacaagaaaagggatggttcggaggagaaaatcaggttcaggttgaaaatcagc |
26791689 |
T |
|
| Q |
105 |
atcaaagatagcaacataatcacattgtttcacatagctatgtttcattccctcctttaatgcacctgctttgtaaccatttctattgtccctaacttca |
204 |
Q |
| |
|
||||||||| |||||||| ||||||||| |||| |||||||||||||||||||||| ||||| |||||||| |||||||| ||||||||||||||| |
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|
| T |
26791690 |
atcaaagatggcaacatattcacattgtaggacatgactatgtttcattccctcctttagagcaccagctttgtacccatttctgttgtccctaacttca |
26791789 |
T |
|
| Q |
205 |
tactttatattcacacctttg |
225 |
Q |
| |
|
|||||||| |||||||||||| |
|
|
| T |
26791790 |
tactttatgttcacacctttg |
26791810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 91 - 212
Target Start/End: Complemental strand, 41546352 - 41546231
Alignment:
| Q |
91 |
ggttgaaaatcagcatcaaagatagcaacataatcacattgtttcacatagctatgtttcattccctcctttaatgcacctgctttgtaaccatttctat |
190 |
Q |
| |
|
||||||||||||||||||||||| |||||||| ||||| |||| ||||||||||| |||||||| || || | ||||| ||||||||||||||||||| |
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| T |
41546352 |
ggttgaaaatcagcatcaaagatggcaacatagtcacaaagtttgacatagctatgcttcattccttctttaagagcaccagctttgtaaccatttctat |
41546253 |
T |
|
| Q |
191 |
tgtccctaacttcatactttat |
212 |
Q |
| |
|
| ||||| | ||||||||||| |
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| T |
41546252 |
tttcccttatctcatactttat |
41546231 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 112; Significance: 9e-57; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 41917666 - 41917439
Alignment:
| Q |
1 |
aaattaccaaacttccagcgagcctgaacaagaccaatatcaggattattaacaaggaaagggatggttcgccaaagaaaatcaggttctggttgaaaat |
100 |
Q |
| |
|
||||||||||| ||||| ||||| |||| ||| ||||| |||||||||| || | || || | ||| ||||| | ||||||||| ||||||||||||| |
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|
| T |
41917666 |
aaattaccaaatttccaacgagcttgaataagcccaatttcaggattatgcaccataaatggtacggtacgccacaaaaaatcaggctctggttgaaaat |
41917567 |
T |
|
| Q |
101 |
cagcatcaaagatagcaacataatcacattgtttcacatagctatgtttcattccctcctttaatgcacctgctttgtaaccatttctattgtccctaac |
200 |
Q |
| |
|
|||||||||| || ||||||| ||||||||| |||||||||||||| |||||||| || ||||| || ||||||||||| |||||||||||||||||||| |
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|
| T |
41917566 |
cagcatcaaatattgcaacatgatcacattgcttcacatagctatgcttcattccttcttttaaagcccctgctttgtatccatttctattgtccctaac |
41917467 |
T |
|
| Q |
201 |
ttcatactttatattcacacctttgctt |
228 |
Q |
| |
|
|||||||||||||||||| ||||||||| |
|
|
| T |
41917466 |
ttcatactttatattcactcctttgctt |
41917439 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 4 - 179
Target Start/End: Original strand, 20239043 - 20239218
Alignment:
| Q |
4 |
ttaccaaacttccagcgagcctgaacaagaccaatatcaggattattaacaaggaaagggatggttcgccaaagaaaatcaggttctggttgaaaatcag |
103 |
Q |
| |
|
|||||||| |||| ||| | ||||||||| |||| ||||||||| |||||| ||||| |||| || | |||||||||||| || |||||||| |
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|
| T |
20239043 |
ttaccaaatctccaacgaccttgaacaagagcaatttcaggattaccaacaagaaaaggaatggctcttctaagaaaatcaggaggaggactaaaatcag |
20239142 |
T |
|
| Q |
104 |
catcaaagatagcaacataatcacattgtttcacatagctatgtttcattccctcctttaatgcacctgctttgta |
179 |
Q |
| |
|
||||||| || ||||||| ||||| || || ||||||||| |||| | ||| || || ||||||||||||||||| |
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|
| T |
20239143 |
catcaaatatgacaacatattcacaatgcttgacatagctacgttttagtccttctttcaatgcacctgctttgta |
20239218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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