View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3713_low_14 (Length: 229)
Name: NF3713_low_14
Description: NF3713
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3713_low_14 |
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Alignment Details
Target: chr7 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 19 - 214
Target Start/End: Complemental strand, 22137727 - 22137532
Alignment:
| Q |
19 |
cttttgacccaccaaatataatggggacgtggaattaagacattaaacataaacaccaaattccatatgccatattattgttatatatacatcaccagat |
118 |
Q |
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| T |
22137727 |
cttttgacccaccaaatataatggggacgtggaattaagacattaaacataaacaccaaattccatatgccatattattgttatttatacatcaccagat |
22137628 |
T |
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| Q |
119 |
aatttatcacaactgtacagaacctttacttgaaaacatgaaattaatcaatattgttatcatattacagaaagataaaacagatacgaagaataa |
214 |
Q |
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| T |
22137627 |
aatttatcataactgtacagaacctttacttgaaaacatgaaattaatcaatattgttatcatattacagaaagataaaacagatacgaagaataa |
22137532 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 19 - 214
Target Start/End: Complemental strand, 40552754 - 40552559
Alignment:
| Q |
19 |
cttttgacccaccaaatataatggggacgtggaattaagacattaaacataaacaccaaattccatatgccatattattgttatatatacatcaccagat |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
40552754 |
cttttgacccaccaaatataatggggacgtggaattaagacattaaacataaacaccaaattccatatgccatattattgttatttatacatcaccagat |
40552655 |
T |
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| Q |
119 |
aatttatcacaactgtacagaacctttacttgaaaacatgaaattaatcaatattgttatcatattacagaaagataaaacagatacgaagaataa |
214 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40552654 |
aatttatcataactgtacagaacctttacttgaaaacatgaaattaatcaatattgttatcatattacagaaagataaaacagatacgaagaataa |
40552559 |
T |
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