View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3713_low_2 (Length: 497)
Name: NF3713_low_2
Description: NF3713
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3713_low_2 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 450; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 450; E-Value: 0
Query Start/End: Original strand, 1 - 478
Target Start/End: Complemental strand, 25924222 - 25923745
Alignment:
| Q |
1 |
tatcccggtagaacctaccgtttctacacaggtccaaaggtctacgaattcggctatggtctaagctactcaaattattcctacaactttatttccgtca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25924222 |
tatcccggtagaacctaccgtttctacacaggtccaaaggtctacgaattcggctatggtctaagctactcaaattattcctacaactttatttccgtca |
25924123 |
T |
|
| Q |
101 |
aaaacaacaaccttcacatcaaccaatcaaccactcattcaatactcgaaaactctgaaacaatctattacaaacttgtttcagagttaggtgaagaaac |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25924122 |
aaaacaacaaccttcacatcaaccaatcaaccactcattcgatactcgaaaactctgaaacaatctattacaaacttgtttcagagttaggtgaagaaac |
25924023 |
T |
|
| Q |
201 |
atgtcaaaccatgtcaatttctgtcacattgggaattacaaatactggaagcatggctgggaaacatcctgtgttgctgtttgtgaaaccaaagaaaggt |
300 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
25924022 |
atgtaaaaccatgtcaatttctgtcacattgggaattacaaatactggaagcatggctgggaaacatcctgtgttgctgtttgtgaagccaaagaaaggt |
25923923 |
T |
|
| Q |
301 |
agaaatggaaatccagtaaaacagttggtagggtttgagagtgtgacgatagaaggaggtggaaaaggtgaagttggatttgaagttagtgtctgtgagc |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
25923922 |
agaaatggaaatccagtaaaacagttggtagggtttgagagtgtgacggtagaaggaggaggaaaaggtgaagttggatttgaagttagtgtttgtgagc |
25923823 |
T |
|
| Q |
401 |
atcttagtagagcaaatgagagtggtgttaaggtgattgaagaaggtggtcatttgttggttgtgggagaggtagagt |
478 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
25923822 |
atcttagtagagcaaatgagagtggtgttaaggtgattgaagaaggtggtcatttgttggttgtgggagaggaagagt |
25923745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 1 - 478
Target Start/End: Complemental strand, 25905379 - 25904902
Alignment:
| Q |
1 |
tatcccggtagaacctaccgtttctacacaggtccaaaggtctacgaattcggctatggtctaagctactcaaattattcctacaactttatttccgtca |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
25905379 |
tatcccggtagaacctaccgtttctacacaggtccaaaggtctacgaattcggctatggcctaagctactcaaattattcctacaacttcatttccgtca |
25905280 |
T |
|
| Q |
101 |
aaaacaacaaccttcacatcaaccaatcaaccactcattcaatactcgaaaactctgaaacaatctattacaaacttgtttcagagttaggtgaagaaac |
200 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||| |
|
|
| T |
25905279 |
aaaataacaaccttcacatcaaccaatcaaccacttattcaatactcgaaaactctgaaacaatcaattacaaacttgtttcagagttaggcgaagaaac |
25905180 |
T |
|
| Q |
201 |
atgtcaaaccatgtcaatttctgtcacattgggaattacaaatactggaagcatggctgggaaacatcctgtgttgctgtttgtgaaaccaaagaaaggt |
300 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||| |
|
|
| T |
25905179 |
atgtaaaaccatgtcaatttctgtcacattgggaattacaaatactggaagcatggctgggaagcatcctgtgttgctgtttgtgaagccaaagaaaggt |
25905080 |
T |
|
| Q |
301 |
agaaatggaaatccagtaaaacagttggtagggtttgagagtgtgacgatagaaggaggtggaaaaggtgaagttggatttgaagttagtgtctgtgagc |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||| |||||||||||||||||||||||||| ||||||| |
|
|
| T |
25905079 |
agaaatggaaatccagtaaaacagttggtagggtttgagagtgtgacggtggaaggaggtggaaagggtgaagttggatttgaagttagtgtttgtgagc |
25904980 |
T |
|
| Q |
401 |
atcttagtagagcaaatgagagtggtgttaaggtgattgaagaaggtggtcatttgttggttgtgggagaggtagagt |
478 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||| ||| ||||| |
|
|
| T |
25904979 |
atcttagtagagcaaatgagagtggtgttaaggtgattgaagaaggtggttatttgtttcttgtgggacaggaagagt |
25904902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 1 - 478
Target Start/End: Complemental strand, 25884045 - 25883568
Alignment:
| Q |
1 |
tatcccggtagaacctaccgtttctacacaggtccaaaggtctacgaattcggctatggtctaagctactcaaattattcctacaactttatttccgtca |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
25884045 |
tatcccggtagaacctaccgtttctacacaggtccaaaggtctacgaattcggctatggcctaagctactcaaattattcctacaacttcatttccgtca |
25883946 |
T |
|
| Q |
101 |
aaaacaacaaccttcacatcaaccaatcaaccactcattcaatactcgaaaactctgaaacaatctattacaaacttgtttcagagttaggtgaagaaa- |
199 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||| |||||||| ||||||| |
|
|
| T |
25883945 |
aaaacaacaacattcacatcaaccaatcaaccactcattcgatactcgaaaactctgaaacaatccgttacaaacttgtttcggagttagg-gaagaaag |
25883847 |
T |
|
| Q |
200 |
catgtcaaaccatgtcaatttctgtcacattgggaattacaaatactggaagcatggctgggaaacatcctgtgttgctgtttgtgaaaccaaagaaagg |
299 |
Q |
| |
|
||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25883846 |
catgtaaaaccatgtcaatttctgtaacattgggaattacaaatactggaagcatggctgggaaacatcctgtgttgctgtttgtgaaaccaaagaaagg |
25883747 |
T |
|
| Q |
300 |
tagaaatggaaatccagtaaaacagttggtagggtttgagagtgtgacgatagaaggaggtggaaaaggtgaagttggatttgaagttagtgtctgtgag |
399 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
25883746 |
tagaaatggaaatccagtaaaacagttggtagggtttgagagtgtgacggtagaagggggtggaaaaggtgaagttggatttgaagttagtgtttgtgag |
25883647 |
T |
|
| Q |
400 |
catcttagtagagcaaatgagagtggtgttaaggtgattgaagaaggtggtcatttgttggttgtgggagaggtagagt |
478 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| |||||| |
|
|
| T |
25883646 |
catcttagtagagcaaatgagagtggtgttaaggtgattgaagaaggtggttatttgtttcttgtgggagagttagagt |
25883568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 1 - 478
Target Start/End: Original strand, 25961047 - 25961524
Alignment:
| Q |
1 |
tatcccggtagaacctaccgtttctacacaggtccaaaggtctacgaattcggctatggtctaagctactcaaattattcctacaactttatttccgtca |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
25961047 |
tatcccggtagaacctaccgtttctacacaggtccaaaggtctacgaattcggctatggtctaagctactcaaattattcctacaacttcatttccgtca |
25961146 |
T |
|
| Q |
101 |
aaaacaacaaccttcacatcaaccaatcaaccactcattcaatactcgaaaactctgaaacaatctattacaaacttgtttcagagttaggtgaagaaa- |
199 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||| |||||||||||||||| ||| |||||||| |||||||||||||||| |||||||| ||||||| |
|
|
| T |
25961147 |
aaaataacaaccttcacatcaaccaatcaaccacttattcaatactcgaaaaatctcaaacaatccattacaaacttgtttcggagttagg-gaagaaag |
25961245 |
T |
|
| Q |
200 |
catgtcaaaccatgtcaatttctgtcacattgggaattacaaatactggaagcatggctgggaaacatcctgtgttgctgtttgtgaaaccaaagaaagg |
299 |
Q |
| |
|
||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25961246 |
catgtaaaaccatgtcaatttctgtaacattgggaattacaaatactggaagcatggctgggaaacatcctgtgttgctgtttgtgaaaccaaagaaagg |
25961345 |
T |
|
| Q |
300 |
tagaaatggaaatccagtaaaacagttggtagggtttgagagtgtgacgatagaaggaggtggaaaaggtgaagttggatttgaagttagtgtctgtgag |
399 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
25961346 |
tagaaatggaaatccagtaaaacagttggtagggtttgagagtgtgacggtagaagggggtggaaaaggtgaagttggatttgaagttagtgtttgtgag |
25961445 |
T |
|
| Q |
400 |
catcttagtagagcaaatgagagtggtgttaaggtgattgaagaaggtggtcatttgttggttgtgggagaggtagagt |
478 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| |||||| |
|
|
| T |
25961446 |
catcttagtagagcaaatgagagtggtgttaaggtgattgaagaaggtggttatttgtttcttgtgggagagttagagt |
25961524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University