View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3713_low_3 (Length: 401)
Name: NF3713_low_3
Description: NF3713
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3713_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 104; Significance: 1e-51; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 104 - 360
Target Start/End: Original strand, 8112056 - 8112313
Alignment:
| Q |
104 |
atccttctatgttgcacctatccaacaattgagatattacacaccaaaaaatatatgatttatccctttctcacacgattgagtgccta--agagagaga |
201 |
Q |
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| T |
8112056 |
atccttcattgttgcccctatccaaaaactgagatattacaccctaaaaaatacatgatttatccctttctcacacgattgagtgcctaagagagagaga |
8112155 |
T |
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| Q |
202 |
aagaaaagctacaacagtccaacgaccaagtatagtaacaatttgtttgcaaatagtgggtgattgaatggaggatacaaaccaatggttggcacatggt |
301 |
Q |
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| T |
8112156 |
aagaaaagctacaacaatccaacgagcgagcacaattttggtttgtttgcaaagag-gggtgattgaatggggggtacaacctaatggttggcacacagt |
8112254 |
T |
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| Q |
302 |
agagaaggtcgtgactttgcagcagcggcggatgttaagaaatgcatgaatgctttaca |
360 |
Q |
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| T |
8112255 |
agagaaggttgtcactttgcagcggcggcgaacgttaagaaatgcacaactgctttaca |
8112313 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 103; Significance: 4e-51; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 285 - 391
Target Start/End: Complemental strand, 1087430 - 1087324
Alignment:
| Q |
285 |
aatggttggcacatggtagagaaggtcgtgactttgcagcagcggcggatgttaagaaatgcatgaatgctttacaatttattgatattgatacttaatt |
384 |
Q |
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| T |
1087430 |
aatggttggcacacggtagagaaggtcgtgactttgcagcagcggcggatgttaagaaatgcatgaatgctttacaatttattgatattgatacttaatt |
1087331 |
T |
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| Q |
385 |
acctttg |
391 |
Q |
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| T |
1087330 |
acctttg |
1087324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 130 - 239
Target Start/End: Complemental strand, 1087539 - 1087429
Alignment:
| Q |
130 |
aattgagatattacacaccaaaaaatatatgatttatccctttctcacacgattgagtgcctaagagagagaaagaaaagctacaaca-gtccaacgacc |
228 |
Q |
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| T |
1087539 |
aattgagatattacacaccaaaaaatatatgatttatccctttctcacacgattgagtgcctaagagagagaaagaaaagctgcaacatgtccaacgacc |
1087440 |
T |
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| Q |
229 |
aagtatagtaa |
239 |
Q |
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| T |
1087439 |
aagtatagtaa |
1087429 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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