View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3713_low_5 (Length: 364)
Name: NF3713_low_5
Description: NF3713
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3713_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 307; Significance: 1e-173; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 19 - 354
Target Start/End: Original strand, 51350679 - 51351018
Alignment:
| Q |
19 |
caacacacctgacacacattcaacttgaatagctatatataaaacatatggaggcgaatgaagaaacggtccctgtaaaatacccaacaatggactccct |
118 |
Q |
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| T |
51350679 |
caacacatctgacacacattcaacttgaatagctatatataaaacatatggaggcgaatgaagaaacggtccctgtaaaatacccaacaatggactccct |
51350778 |
T |
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| Q |
119 |
cctggattcggggtacaatagaatctctttccagaaacaatgcaaattagtgcagcagaagcatataagagagatataagaaaacctttgtaccatttga |
218 |
Q |
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| T |
51350779 |
cctggattcggggtacaatagaatctctttccagaaacaatgcaaattagtgcagcagaagcatataagagagatataagaaaacctttgtaccatttga |
51350878 |
T |
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| Q |
219 |
attgtgatctaacatgaactacaaaggtggcacctaagctaacagaaacc----aatcaaagaagctagctagttggagacgatcctttggattcttgtc |
314 |
Q |
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| T |
51350879 |
attgtgatctaacatgaactacaaaggtggcacctaagctaacaaaaaccaattaatcaaagaagctagctagttggagacggtcctttggattcttgtc |
51350978 |
T |
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| Q |
315 |
atcaaattgatcagctcctagagcatgaacacagcctttg |
354 |
Q |
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| T |
51350979 |
atcaaattgatcagctcctagagcaggaacacagcctttg |
51351018 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 90 - 259
Target Start/End: Original strand, 51360104 - 51360273
Alignment:
| Q |
90 |
cctgtaaaatacccaacaatggactccctcctggattcggggtacaatagaatctctttccagaaacaatgcaaattagtgcagcagaagcatataagag |
189 |
Q |
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| T |
51360104 |
cctgtaaaatactcaacaatggactctccccaggaattcgtttacgatagaatctctttccagcaacaatgcaaataagtgcagaggcagaacatgagag |
51360203 |
T |
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| Q |
190 |
agatataagaaaacctttgtaccatttgaattgtgatctaacatgaactacaaaggtggcacctaagcta |
259 |
Q |
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| T |
51360204 |
agatataagaaaacctttgtaccaatcgaagattgtgctaacataaactacaaaagtgacacctaagcta |
51360273 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 259 - 347
Target Start/End: Original strand, 51360292 - 51360380
Alignment:
| Q |
259 |
aacagaaaccaatcaaagaagctagctagttggagacgatcctttggattcttgtcatcaaattgatcagctcctagagcatgaacaca |
347 |
Q |
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| T |
51360292 |
aacaaaaaccaattgaagaagcttgctagttggagatattcttttggattcatatcatcaaattgatctgctcctagagcaggaacaca |
51360380 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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