View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3713_low_9 (Length: 293)

Name: NF3713_low_9
Description: NF3713
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3713_low_9
NF3713_low_9
[»] chr1 (25 HSPs)
chr1 (11-278)||(40964592-40964870)
chr1 (136-217)||(8529918-8529999)
chr1 (172-252)||(41676436-41676516)
chr1 (136-216)||(36285619-36285699)
chr1 (136-222)||(35349503-35349587)
chr1 (136-215)||(41498523-41498602)
chr1 (136-230)||(7444614-7444708)
chr1 (136-222)||(40094972-40095058)
chr1 (136-216)||(49946633-49946713)
chr1 (136-252)||(20576137-20576256)
chr1 (154-252)||(38509898-38510001)
chr1 (136-250)||(50744291-50744406)
chr1 (136-222)||(30010451-30010537)
chr1 (144-252)||(10391999-10392108)
chr1 (144-213)||(32951366-32951435)
chr1 (136-215)||(51597787-51597866)
chr1 (154-222)||(12234147-12234215)
chr1 (136-207)||(45585739-45585810)
chr1 (154-231)||(26940873-26940950)
chr1 (158-222)||(2858971-2859035)
chr1 (145-216)||(6563704-6563775)
chr1 (189-230)||(7444509-7444550)
chr1 (189-222)||(10391911-10391944)
chr1 (189-222)||(32951490-32951523)
chr1 (189-252)||(51597672-51597740)
[»] chr4 (30 HSPs)
chr4 (136-222)||(45742009-45742095)
chr4 (136-216)||(31348366-31348446)
chr4 (144-250)||(2247814-2247920)
chr4 (136-222)||(54935188-54935274)
chr4 (136-222)||(34110924-34111009)
chr4 (136-229)||(5730862-5730955)
chr4 (136-210)||(27735864-27735938)
chr4 (136-204)||(16400919-16400987)
chr4 (144-222)||(24565385-24565463)
chr4 (136-222)||(35248805-35248891)
chr4 (136-210)||(54320553-54320627)
chr4 (154-210)||(29798422-29798478)
chr4 (136-224)||(36151695-36151782)
chr4 (164-222)||(6938394-6938452)
chr4 (144-222)||(49735507-49735585)
chr4 (136-216)||(22659308-22659389)
chr4 (136-222)||(46007738-46007826)
chr4 (145-217)||(36278379-36278451)
chr4 (154-252)||(41174482-41174585)
chr4 (136-219)||(44784111-44784193)
chr4 (168-214)||(23813148-23813194)
chr4 (136-198)||(26167056-26167118)
chr4 (176-222)||(37711282-37711328)
chr4 (167-221)||(54001146-54001200)
chr4 (193-230)||(2247977-2248014)
chr4 (169-214)||(11842356-11842401)
chr4 (173-214)||(45911327-45911368)
chr4 (189-252)||(1968531-1968599)
chr4 (170-214)||(21694937-21694981)
chr4 (136-176)||(45132586-45132626)
[»] chr7 (26 HSPs)
chr7 (136-227)||(34235041-34235132)
chr7 (136-215)||(24970211-24970290)
chr7 (136-221)||(33655148-33655233)
chr7 (144-222)||(47390983-47391061)
chr7 (136-221)||(40196572-40196657)
chr7 (144-252)||(32872790-32872898)
chr7 (136-215)||(18231705-18231784)
chr7 (136-222)||(4833570-4833656)
chr7 (136-252)||(13425124-13425245)
chr7 (154-216)||(42306467-42306529)
chr7 (144-222)||(43230363-43230440)
chr7 (145-222)||(40572274-40572350)
chr7 (177-221)||(30891034-30891078)
chr7 (154-251)||(10315770-10315872)
chr7 (136-252)||(41496961-41497082)
chr7 (144-215)||(13770994-13771063)
chr7 (155-222)||(1051539-1051605)
chr7 (136-222)||(25887311-25887398)
chr7 (190-253)||(34235181-34235244)
chr7 (136-252)||(41008300-41008418)
chr7 (162-214)||(19835854-19835906)
chr7 (136-204)||(22163167-22163234)
chr7 (136-204)||(22221875-22221942)
chr7 (167-225)||(30592289-30592347)
chr7 (189-222)||(31571642-31571675)
chr7 (174-214)||(42283139-42283179)
[»] chr5 (37 HSPs)
chr5 (136-230)||(4373597-4373691)
chr5 (159-222)||(1657955-1658018)
chr5 (147-252)||(8502839-8502949)
chr5 (136-214)||(13634830-13634908)
chr5 (145-252)||(14245092-14245204)
chr5 (136-216)||(36392195-36392275)
chr5 (144-222)||(26415020-26415098)
chr5 (154-220)||(43544-43611)
chr5 (136-215)||(20513491-20513570)
chr5 (136-215)||(28279522-28279601)
chr5 (136-210)||(7544255-7544329)
chr5 (136-210)||(20146917-20146991)
chr5 (190-252)||(20147048-20147110)
chr5 (136-252)||(37551526-37551645)
chr5 (136-252)||(37654356-37654475)
chr5 (136-209)||(9856999-9857072)
chr5 (155-220)||(36363170-36363235)
chr5 (136-252)||(37607013-37607134)
chr5 (136-252)||(37779222-37779343)
chr5 (136-252)||(10072661-10072772)
chr5 (154-230)||(11419223-11419299)
chr5 (154-215)||(16501836-16501897)
chr5 (136-220)||(9798653-9798737)
chr5 (168-227)||(2556167-2556226)
chr5 (167-239)||(6597809-6597885)
chr5 (155-217)||(10650552-10650614)
chr5 (136-222)||(16938598-16938684)
chr5 (156-217)||(17780278-17780340)
chr5 (136-222)||(29002245-29002331)
chr5 (171-252)||(40305674-40305755)
chr5 (138-222)||(32727816-32727900)
chr5 (136-215)||(17024270-17024349)
chr5 (145-210)||(4423339-4423404)
chr5 (164-221)||(13839768-13839825)
chr5 (173-210)||(14245202-14245239)
chr5 (186-222)||(2550391-2550427)
chr5 (189-252)||(26414897-26414965)
[»] chr3 (29 HSPs)
chr3 (136-222)||(24560336-24560422)
chr3 (136-216)||(41110366-41110446)
chr3 (136-250)||(9312482-9312596)
chr3 (154-222)||(37102188-37102256)
chr3 (136-229)||(18654632-18654725)
chr3 (144-221)||(52474042-52474119)
chr3 (154-222)||(30200127-30200195)
chr3 (145-252)||(10748299-10748406)
chr3 (136-215)||(41039996-41040075)
chr3 (154-216)||(220442-220504)
chr3 (136-222)||(21773901-21773987)
chr3 (156-222)||(28581225-28581291)
chr3 (154-216)||(46556282-46556344)
chr3 (136-216)||(37807199-37807279)
chr3 (136-210)||(52185135-52185207)
chr3 (136-222)||(25655009-25655095)
chr3 (144-222)||(36568943-36569020)
chr3 (167-251)||(26135807-26135891)
chr3 (144-222)||(16275744-16275822)
chr3 (136-182)||(43005818-43005864)
chr3 (168-213)||(40463919-40463964)
chr3 (167-217)||(17474250-17474301)
chr3 (167-222)||(17474356-17474411)
chr3 (172-221)||(26135952-26136001)
chr3 (136-209)||(27541983-27542056)
chr3 (136-204)||(2387817-2387885)
chr3 (167-250)||(10943764-10943852)
chr3 (171-223)||(18086018-18086070)
chr3 (189-252)||(41110493-41110561)
[»] scaffold0067 (1 HSPs)
scaffold0067 (136-222)||(39226-39312)
[»] chr6 (22 HSPs)
chr6 (136-222)||(1300739-1300825)
chr6 (136-222)||(9721177-9721263)
chr6 (136-222)||(33236070-33236155)
chr6 (136-252)||(9719035-9719156)
chr6 (157-220)||(19278075-19278138)
chr6 (145-215)||(1390447-1390517)
chr6 (136-214)||(4097559-4097637)
chr6 (144-222)||(31849237-31849315)
chr6 (154-252)||(34176472-34176574)
chr6 (136-222)||(10818335-10818421)
chr6 (144-222)||(21606883-21606961)
chr6 (155-215)||(1395774-1395834)
chr6 (136-216)||(2900029-2900109)
chr6 (162-212)||(7775996-7776046)
chr6 (145-215)||(33041590-33041660)
chr6 (144-209)||(10348850-10348915)
chr6 (157-224)||(14515611-14515678)
chr6 (154-219)||(5585343-5585409)
chr6 (157-222)||(9298625-9298691)
chr6 (167-222)||(31799070-31799126)
chr6 (136-176)||(25741526-25741566)
chr6 (136-215)||(30849960-30850037)
[»] chr2 (27 HSPs)
chr2 (154-222)||(36046243-36046311)
chr2 (136-219)||(34209583-34209666)
chr2 (136-222)||(15224733-15224819)
chr2 (136-222)||(39732768-39732854)
chr2 (136-226)||(42316799-42316889)
chr2 (136-216)||(16565896-16565976)
chr2 (159-230)||(8426910-8426981)
chr2 (144-222)||(23748222-23748300)
chr2 (144-230)||(36347572-36347658)
chr2 (136-217)||(27926672-27926753)
chr2 (162-222)||(1583222-1583282)
chr2 (172-252)||(12541774-12541854)
chr2 (145-222)||(39821797-39821874)
chr2 (136-215)||(36566896-36566976)
chr2 (136-199)||(17379931-17379994)
chr2 (167-213)||(887164-887210)
chr2 (136-230)||(12751934-12752028)
chr2 (144-229)||(19566852-19566938)
chr2 (144-252)||(9631687-9631800)
chr2 (189-230)||(36347713-36347754)
chr2 (136-200)||(12541885-12541949)
chr2 (155-222)||(40022510-40022578)
chr2 (159-222)||(7681386-7681449)
chr2 (172-210)||(9427141-9427179)
chr2 (168-214)||(14196820-14196866)
chr2 (138-204)||(28262500-28262566)
chr2 (166-230)||(16713523-16713587)
[»] chr8 (33 HSPs)
chr8 (154-253)||(29358353-29358446)
chr8 (136-222)||(1026888-1026974)
chr8 (154-215)||(1281280-1281341)
chr8 (144-229)||(11785653-11785738)
chr8 (145-222)||(30479756-30479833)
chr8 (144-216)||(30664488-30664560)
chr8 (136-223)||(11575444-11575531)
chr8 (136-222)||(31738542-31738628)
chr8 (136-216)||(4247563-4247642)
chr8 (154-222)||(31543111-31543179)
chr8 (167-250)||(33922531-33922614)
chr8 (136-210)||(9718530-9718604)
chr8 (136-222)||(36308962-36309048)
chr8 (154-222)||(2248589-2248657)
chr8 (154-210)||(34634280-34634336)
chr8 (134-229)||(29690954-29691049)
chr8 (153-222)||(10028258-10028328)
chr8 (154-216)||(16653086-16653148)
chr8 (136-217)||(37923122-37923203)
chr8 (136-216)||(7979259-7979339)
chr8 (144-210)||(6315189-6315255)
chr8 (136-222)||(7502993-7503079)
chr8 (165-215)||(13405128-13405178)
chr8 (136-199)||(37032498-37032561)
chr8 (190-225)||(42650509-42650544)
chr8 (159-252)||(3726867-3726965)
chr8 (172-222)||(8815296-8815346)
chr8 (168-214)||(38198199-38198245)
chr8 (172-252)||(30365134-30365219)
chr8 (189-221)||(7979180-7979212)
chr8 (166-214)||(22591556-22591604)
chr8 (154-182)||(35694834-35694862)
chr8 (167-222)||(43732836-43732892)
[»] scaffold0171 (1 HSPs)
scaffold0171 (144-219)||(16077-16152)
[»] scaffold0262 (1 HSPs)
scaffold0262 (136-222)||(16335-16421)
[»] scaffold0294 (1 HSPs)
scaffold0294 (136-252)||(15382-15502)
[»] scaffold0026 (2 HSPs)
scaffold0026 (156-216)||(1311-1371)
scaffold0026 (189-230)||(1203-1244)
[»] scaffold0096 (1 HSPs)
scaffold0096 (154-214)||(6720-6780)
[»] scaffold0341 (1 HSPs)
scaffold0341 (145-216)||(18897-18968)
[»] scaffold0007 (1 HSPs)
scaffold0007 (167-222)||(242366-242421)
[»] scaffold0198 (1 HSPs)
scaffold0198 (173-222)||(3186-3235)


Alignment Details
Target: chr1 (Bit Score: 212; Significance: 1e-116; HSPs: 25)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 11 - 278
Target Start/End: Original strand, 40964592 - 40964870
Alignment:
Q  11 caaaggtatattagggacaatgataaacattcaactcaacaatattatgaataaagataaaaaggagttaagagctcacaacagttttttaatctccctc 110  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40964592 caaaggtatattagggacaatgataaacattcaactcaacaaaattatgaataaagataaaaaggagttaagagctcacaacagttttttaatctccctc 40964691  T
Q  111 taattgaagaaaattagttctactcatatgatggtttatcacattaatatgttaactttt-taaaaaatattttacagtgtccgtaatttaaaaatgaaa 209  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||  ||||||||||| || |||||||||||||||||||||||    
T  40964692 taattgaagaaaattagttctactcatatgatggtttatcacgttaatatgttaacttttaaaaaaaatatttgacggtgtccgtaatttaaaaatgaaa 40964791  T
Q  210 agtaaactctcc----------cttctcttcataaaccctctatccaaacacaagagaaaaacggaaaagagcaccctt 278  Q
    ||||||||||||          ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  40964792 agtaaactctcccttcttttctcttctcttcataaaccctctatccaaacacaagaggaaaacggaaaagagcaccctt 40964870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 136 - 217
Target Start/End: Original strand, 8529918 - 8529999
Alignment:
Q  136 atatgatggtttatcacattaatatgttaactttttaaaaaatattttacagtgtccgtaatttaaaaatgaaaagtaaact 217  Q
    ||||||| ||||| ||  ||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||    
T  8529918 atatgatcgtttaccatgttaatatgttaactttttaaaaaatatttcatagtgtccgtaatttaaaaatgaaaagtaaact 8529999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 172 - 252
Target Start/End: Original strand, 41676436 - 41676516
Alignment:
Q  172 aaaaaatattttacagtgtccgtaatttaaaaatgaaaagtaaactctcccttctcttcataaaccctctatccaaacaca 252  Q
    |||||| |||||| ||||||||||||||||||||||||||||||| ||||| ||||||| ||||||||| |||||||||||    
T  41676436 aaaaaacattttatagtgtccgtaatttaaaaatgaaaagtaaaccctcccctctcttcctaaaccctcgatccaaacaca 41676516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 136 - 216
Target Start/End: Complemental strand, 36285699 - 36285619
Alignment:
Q  136 atatgatggtttatcacattaatatgttaactttttaaaaaatattttacagtgtccgtaatttaaaaatgaaaagtaaac 216  Q
    ||||||| ||||||||  ||||||||||||||||||||||||||||||| ||||| |||||||||||||||| || |||||    
T  36285699 atatgatcgtttatcatgttaatatgttaactttttaaaaaatattttatagtgttcgtaatttaaaaatgataaataaac 36285619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 136 - 222
Target Start/End: Complemental strand, 35349587 - 35349503
Alignment:
Q  136 atatgatggtttatcacattaatatgttaactttttaaaaaatattttacagtgtccgtaatttaaaaatgaaaagtaaactctccc 222  Q
    ||||||| ||||||||  ||||||||||||||||||| |||| ||||  |||||||||||||||||||||||||||||||| |||||    
T  35349587 atatgattgtttatcatgttaatatgttaactttttataaaacattt--cagtgtccgtaatttaaaaatgaaaagtaaaccctccc 35349503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 136 - 215
Target Start/End: Original strand, 41498523 - 41498602
Alignment:
Q  136 atatgatggtttatcacattaatatgttaactttttaaaaaatattttacagtgtccgtaatttaaaaatgaaaagtaaa 215  Q
    ||||||| ||||||||  ||||||||||||||||||| |||| |||| | ||||||||||||||||||||||||||||||    
T  41498523 atatgatcgtttatcatgttaatatgttaactttttataaaacatttcatagtgtccgtaatttaaaaatgaaaagtaaa 41498602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 136 - 230
Target Start/End: Original strand, 7444614 - 7444708
Alignment:
Q  136 atatgatggtttatcacattaatatgttaactttttaaaaaatattttacagtgtccgtaatttaaaaatgaaaagtaaactctcccttctcttc 230  Q
    ||||||| |||||| |  |||||||||||||||||||||||  |||||| |||||||||||||| |||||||||| ||||| ||||| |||||||    
T  7444614 atatgatcgtttattatgttaatatgttaactttttaaaaatcattttatagtgtccgtaattttaaaatgaaaactaaaccctcccctctcttc 7444708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 136 - 222
Target Start/End: Complemental strand, 40095058 - 40094972
Alignment:
Q  136 atatgatggtttatcacattaatatgttaactttttaaaaaatattttacagtgtccgtaatttaaaaatgaaaagtaaactctccc 222  Q
    ||||||| ||||||||  ||||| ||||||||||||| |||| |||| | ||||||||||||||||||||||||||||||| |||||    
T  40095058 atatgatcgtttatcatgttaatttgttaactttttataaaacatttcatagtgtccgtaatttaaaaatgaaaagtaaaccctccc 40094972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 136 - 216
Target Start/End: Complemental strand, 49946713 - 49946633
Alignment:
Q  136 atatgatggtttatcacattaatatgttaactttttaaaaaatattttacagtgtccgtaatttaaaaatgaaaagtaaac 216  Q
    |||||||  |||||||  ||||||||||||||||| ||||||||||||| |||||||||||||||||||||| || |||||    
T  49946713 atatgataatttatcatgttaatatgttaacttttaaaaaaatattttatagtgtccgtaatttaaaaatgacaaataaac 49946633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 136 - 252
Target Start/End: Complemental strand, 20576256 - 20576137
Alignment:
Q  136 atatgatggtttatcacattaatatgttaactttttaaaaaatattttacagtgtccgtaatttaaaaatgaaaagtaaactctcccttctcttca---- 231  Q
    ||||||| ||||||||  ||||||| |||||| ||||||||| ||||  |||||||||||||||||||||||||  ||||||||||| || ||||         
T  20576256 atatgatcgtttatcatgttaatatattaactctttaaaaaacattt--cagtgtccgtaatttaaaaatgaaatctaaactctcccctcccttcccctc 20576159  T
Q  232 -taaaccctctatccaaacaca 252  Q
     |||||||||||||||||||||    
T  20576158 ctaaaccctctatccaaacaca 20576137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 154 - 252
Target Start/End: Complemental strand, 38510001 - 38509898
Alignment:
Q  154 ttaatatgttaactttttaaaaaatattttacagtgtccgtaatttaaaaatgaaaagtaaa-----ctctcccttctcttcataaaccctctatccaaa 248  Q
    |||| ||||||| ||||||||| | |||| | ||||||||||||||||||||||||||| ||     |||||||||| | || |||||||||||||||||    
T  38510001 ttaagatgttaattttttaaaagacatttcatagtgtccgtaatttaaaaatgaaaagtgaaccctcctctcccttcccctcctaaaccctctatccaaa 38509902  T
Q  249 caca 252  Q
    ||||    
T  38509901 caca 38509898  T

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Target: chr1; HSP #12
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 136 - 250
Target Start/End: Complemental strand, 50744406 - 50744291
Alignment:
Q  136 atatgatggtttatcacattaatatgttaactttttaaaaaat-attttacagtgtccgtaatttaaaaatgaaaagtaaactctcccttctcttcataa 234  Q
    ||||||| ||||||||  |||||||||||||| |||||||||  |||| | ||||||||||||||||||||||||  ||||  |||| ||| | ||||||    
T  50744406 atatgatcgtttatcatgttaatatgttaactctttaaaaaaacatttcatagtgtccgtaatttaaaaatgaaatctaaatcctccattcccctcataa 50744307  T
Q  235 accctctatccaaaca 250  Q
    | |||| |||||||||    
T  50744306 atcctccatccaaaca 50744291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 136 - 222
Target Start/End: Original strand, 30010451 - 30010537
Alignment:
Q  136 atatgatggtttatcacattaatatgttaactttttaaaaaatattttacagtgtccgtaatttaaaaatgaaaagtaaactctccc 222  Q
    ||||||| |||||| |  |||||||||||||| ||||||||| ||||   |||||||||||||| |||||||||||||||| |||||    
T  30010451 atatgatcgtttataatgttaatatgttaactatttaaaaaacatttcgtagtgtccgtaatttcaaaatgaaaagtaaaccctccc 30010537  T

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Target: chr1; HSP #14
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 144 - 252
Target Start/End: Original strand, 10391999 - 10392108
Alignment:
Q  144 gtttatcacattaatatgttaactttttaaaaaat-attttacagtgtccgtaatttaaaaatgaaaagtaaactctcccttctcttcataaaccctcta 242  Q
    ||||||||  ||||||||||||||||||||||||  |||| | | |||  |||||||||||| ||||||||||||||| | || | || ||||||||| |    
T  10391999 gtttatcatgttaatatgttaactttttaaaaaaacatttaataatgtttgtaatttaaaaacgaaaagtaaactctctcctcccctcctaaaccctcca 10392098  T
Q  243 tccaaacaca 252  Q
    ||||||||||    
T  10392099 tccaaacaca 10392108  T

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Target: chr1; HSP #15
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 144 - 213
Target Start/End: Complemental strand, 32951435 - 32951366
Alignment:
Q  144 gtttatcacattaatatgttaactttttaaaaaatattttacagtgtccgtaatttaaaaatgaaaagta 213  Q
    ||||||||  ||||||||||||||||||| |||| |||| |  |||||||||||||||||||||||||||    
T  32951435 gtttatcatgttaatatgttaactttttataaaacatttcattgtgtccgtaatttaaaaatgaaaagta 32951366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 136 - 215
Target Start/End: Original strand, 51597787 - 51597866
Alignment:
Q  136 atatgatggtttatcacattaatatgttaactttttaaaaaatattttacagtgtccgtaatttaaaaatgaaaagtaaa 215  Q
    ||||||| ||||||||  |||||||||||||||||||||||  |||| | ||||| | |||||||||| |||||||||||    
T  51597787 atatgattgtttatcatcttaatatgttaactttttaaaaaccatttcatagtgttcataatttaaaattgaaaagtaaa 51597866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 154 - 222
Target Start/End: Original strand, 12234147 - 12234215
Alignment:
Q  154 ttaatatgttaactttttaaaaaatattttacagtgtccgtaatttaaaaatgaaaagtaaactctccc 222  Q
    |||||||| ||||||| ||||||| ||||   ||||||||||||||||||||||||| ||||| |||||    
T  12234147 ttaatatgctaactttataaaaaacatttcgtagtgtccgtaatttaaaaatgaaaactaaaccctccc 12234215  T

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Target: chr1; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 136 - 207
Target Start/End: Complemental strand, 45585810 - 45585739
Alignment:
Q  136 atatgatggtttatcacattaatatgttaactttttaaaaaatattttacagtgtccgtaatttaaaaatga 207  Q
    ||||||| ||||||||  ||||||||||||||||| |||||| |||||| ||| ||  ||||||||||||||    
T  45585810 atatgatcgtttatcatgttaatatgttaacttttaaaaaaacattttatagtatctataatttaaaaatga 45585739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 154 - 231
Target Start/End: Complemental strand, 26940950 - 26940873
Alignment:
Q  154 ttaatatgttaactttttaaaaaatattttacagtgtccgtaatttaaaaatgaaaagtaaactctcccttctcttca 231  Q
    |||||| |||||||||| || |||||||| | ||||||  |||||||||||| |||||| ||| ||||| ||||||||    
T  26940950 ttaataagttaacttttaaacaaatatttcatagtgtctataatttaaaaataaaaagtgaaccctcccatctcttca 26940873  T

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Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 158 - 222
Target Start/End: Complemental strand, 2859035 - 2858971
Alignment:
Q  158 tatgttaactttttaaaaaatattttacagtgtccgtaatttaaaaatgaaaagtaaactctccc 222  Q
    ||||||||||||||||| || |||| | || ||| |||||||| ||||||||||||||| |||||    
T  2859035 tatgttaactttttaaataacatttcatagggtctgtaatttagaaatgaaaagtaaaccctccc 2858971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 145 - 216
Target Start/End: Original strand, 6563704 - 6563775
Alignment:
Q  145 tttatcacattaatatgttaactttttaaaaaatattttacagtgtccgtaatttaaaaatgaaaagtaaac 216  Q
    |||||||  ||||||| ||||||| |||||||||| || | |||||||   |||||||||||||||||||||    
T  6563704 tttatcatgttaatatattaacttcttaaaaaatagttcatagtgtcctcgatttaaaaatgaaaagtaaac 6563775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 189 - 230
Target Start/End: Complemental strand, 7444550 - 7444509
Alignment:
Q  189 gtccgtaatttaaaaatgaaaagtaaactctcccttctcttc 230  Q
    |||||||||||||||| ||||||||||| |||||||| ||||    
T  7444550 gtccgtaatttaaaaaagaaaagtaaaccctcccttcccttc 7444509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 189 - 222
Target Start/End: Complemental strand, 10391944 - 10391911
Alignment:
Q  189 gtccgtaatttaaaaatgaaaagtaaactctccc 222  Q
    |||||||||||||||||||||||||||| |||||    
T  10391944 gtccgtaatttaaaaatgaaaagtaaaccctccc 10391911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 189 - 222
Target Start/End: Original strand, 32951490 - 32951523
Alignment:
Q  189 gtccgtaatttaaaaatgaaaagtaaactctccc 222  Q
    |||||||||||||||| |||||||||||||||||    
T  32951490 gtccgtaatttaaaaacgaaaagtaaactctccc 32951523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 189 - 252
Target Start/End: Complemental strand, 51597740 - 51597672
Alignment:
Q  189 gtccgtaatttaaaaatgaaaagtaaactc-----tcccttctcttcataaaccctctatccaaacaca 252  Q
    |||||| ||||||||| |||||||||||||     |||||||  ||||||||||||| |||||||||||    
T  51597740 gtccgtgatttaaaaaagaaaagtaaactctcccctcccttcctttcataaaccctcaatccaaacaca 51597672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 63; Significance: 2e-27; HSPs: 30)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 136 - 222
Target Start/End: Original strand, 45742009 - 45742095
Alignment:
Q  136 atatgatggtttatcacattaatatgttaactttttaaaaaatattttacagtgtccgtaatttaaaaatgaaaagtaaactctccc 222  Q
    ||||||| ||||||||  |||||||||||||||||||||||| |||| | |||||||||||||||||||||||||||||||||||||    
T  45742009 atatgatcgtttatcatgttaatatgttaactttttaaaaaacatttcatagtgtccgtaatttaaaaatgaaaagtaaactctccc 45742095  T

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Target: chr4; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 136 - 216
Target Start/End: Complemental strand, 31348446 - 31348366
Alignment:
Q  136 atatgatggtttatcacattaatatgttaactttttaaaaaatattttacagtgtccgtaatttaaaaatgaaaagtaaac 216  Q
    ||||||| ||||||||  ||||||||||| |||||||||||| |||| | |||||||||||||||||||||||||||||||    
T  31348446 atatgattgtttatcatgttaatatgttagctttttaaaaaacatttcatagtgtccgtaatttaaaaatgaaaagtaaac 31348366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 144 - 250
Target Start/End: Complemental strand, 2247920 - 2247814
Alignment:
Q  144 gtttatcacattaatatgttaactttttaaaaaatattttacagtgtccgtaatttaaaaatgaaaagtaaactctcccttctcttcataaaccctctat 243  Q
    |||||||| ||||||| |||||  |||||| ||| |||||| | ||||||||||||||||||||||| | ||| ||||||||||||  ||||| ||||||    
T  2247920 gtttatcatattaataagttaagattttaataaacattttataatgtccgtaatttaaaaatgaaaaatgaaccctcccttctctttctaaactctctat 2247821  T
Q  244 ccaaaca 250  Q
    |||||||    
T  2247820 ccaaaca 2247814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 136 - 222
Target Start/End: Original strand, 54935188 - 54935274
Alignment:
Q  136 atatgatggtttatcacattaatatgttaactttttaaaaaatattttacagtgtccgtaatttaaaaatgaaaagtaaactctccc 222  Q
    ||||||| |||||||| ||||||||| ||||||||||||| | |||| | ||||||||||||||||||||||||| ||||| |||||    
T  54935188 atatgatcgtttatcatattaatatgataactttttaaaatacatttcatagtgtccgtaatttaaaaatgaaaaataaaccctccc 54935274  T

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Target: chr4; HSP #5
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 136 - 222
Target Start/End: Original strand, 34110924 - 34111009
Alignment:
Q  136 atatgatggtttatcacattaatatgttaactttttaaaaaatattttacagtgtccgtaatttaaaaatgaaaagtaaactctccc 222  Q
    ||||||| ||||||||  |||||||||||||||||||||||| |||| ||||| | |||||||||||||| |||||||||| |||||    
T  34110924 atatgatcgtttatcatgttaatatgttaactttttaaaaaacatttcacagtat-cgtaatttaaaaataaaaagtaaaccctccc 34111009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 136 - 229
Target Start/End: Complemental strand, 5730955 - 5730862
Alignment:
Q  136 atatgatggtttatcacattaatatgttaactttttaaaaaatattttacagtgtccgtaatttaaaaatgaaaagtaaactctcccttctctt 229  Q
    |||||||  |||||||  |||||||||||||| || ||||||||||||| || |||||||||||||||||||||  ||||| ||||| ||||||    
T  5730955 atatgatcatttatcatgttaatatgttaactcttcaaaaaatattttatagggtccgtaatttaaaaatgaaatctaaaccctcccatctctt 5730862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 136 - 210
Target Start/End: Original strand, 27735864 - 27735938
Alignment:
Q  136 atatgatggtttatcacattaatatgttaactttttaaaaaatattttacagtgtccgtaatttaaaaatgaaaa 210  Q
    |||||||  |||||||  |||||||| ||||| ||||||||| |||||| |||||||||||||||||||||||||    
T  27735864 atatgatcatttatcatgttaatatgctaactctttaaaaaacattttatagtgtccgtaatttaaaaatgaaaa 27735938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 136 - 204
Target Start/End: Original strand, 16400919 - 16400987
Alignment:
Q  136 atatgatggtttatcacattaatatgttaactttttaaaaaatattttacagtgtccgtaatttaaaaa 204  Q
    ||||||| ||||||||  ||||||||||||||||||||||| ||||| | ||||||| |||||||||||    
T  16400919 atatgatcgtttatcatgttaatatgttaactttttaaaaactatttcatagtgtccctaatttaaaaa 16400987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 144 - 222
Target Start/End: Complemental strand, 24565463 - 24565385
Alignment:
Q  144 gtttatcacattaatatgttaactttttaaaaaatattttacagtgtccgtaatttaaaaatgaaaagtaaactctccc 222  Q
    ||||||||| |||||| ||||||||||||||||  ||||   | | ||||||||||||||||||||||||||| |||||    
T  24565463 gtttatcacgttaataagttaactttttaaaaagcatttcgtaatatccgtaatttaaaaatgaaaagtaaaccctccc 24565385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 136 - 222
Target Start/End: Original strand, 35248805 - 35248891
Alignment:
Q  136 atatgatggtttatcacattaatatgttaactttttaaaaaatattttacagtgtccgtaatttaaaaatgaaaagtaaactctccc 222  Q
    |||||||  |||||||  |||||| |||||||||| |||||||||| |  ||||||| |||||||||| |||||||||||| |||||    
T  35248805 atatgattatttatcatgttaatacgttaacttttaaaaaaatattcttgagtgtccataatttaaaattgaaaagtaaaccctccc 35248891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 136 - 210
Target Start/End: Original strand, 54320553 - 54320627
Alignment:
Q  136 atatgatggtttatcacattaatatgttaactttttaaaaaatattttacagtgtccgtaatttaaaaatgaaaa 210  Q
    ||||||| ||||||||  |||||||| |||||||||||||||  ||| | |||||||||||||||||||| ||||    
T  54320553 atatgattgtttatcatgttaatatgctaactttttaaaaaacgtttcatagtgtccgtaatttaaaaattaaaa 54320627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 154 - 210
Target Start/End: Original strand, 29798422 - 29798478
Alignment:
Q  154 ttaatatgttaactttttaaaaaatattttacagtgtccgtaatttaaaaatgaaaa 210  Q
    |||| ||||||| ||||||||||| |||| | |||||||||||||||||||||||||    
T  29798422 ttaacatgttaattttttaaaaaacatttcatagtgtccgtaatttaaaaatgaaaa 29798478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 136 - 224
Target Start/End: Original strand, 36151695 - 36151782
Alignment:
Q  136 atatgatggtttatcacattaatatgttaactttttaaaaaatattttacagtgtccgtaatttaaaaatgaaaagtaaactctccctt 224  Q
    ||||||| ||||||||  ||||||||||||||||| |||||  |||||  ||||| | |||||||||||||||||||||| ||| ||||    
T  36151695 atatgatcgtttatcatgttaatatgttaactttt-aaaaatcattttctagtgttcataatttaaaaatgaaaagtaaattctacctt 36151782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 164 - 222
Target Start/End: Original strand, 6938394 - 6938452
Alignment:
Q  164 aactttttaaaaaatattttacagtgtccgtaatttaaaaatgaaaagtaaactctccc 222  Q
    |||||||||||||| |||||| | | ||||||||||||||||||||||| ||| |||||    
T  6938394 aactttttaaaaaacattttataatatccgtaatttaaaaatgaaaagtgaaccctccc 6938452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 144 - 222
Target Start/End: Complemental strand, 49735585 - 49735507
Alignment:
Q  144 gtttatcacattaatatgttaactttttaaaaaatattttacagtgtccgtaatttaaaaatgaaaagtaaactctccc 222  Q
    ||||||||  |||||| ||||||||||||||| | |||| |   ||||||||||||||||||||||||| ||| |||||    
T  49735585 gtttatcatgttaataggttaactttttaaaagacatttcatgttgtccgtaatttaaaaatgaaaagtgaaccctccc 49735507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 136 - 216
Target Start/End: Original strand, 22659308 - 22659389
Alignment:
Q  136 atatgatggtttatcacattaatatgttaactttttaaaaaatattttacagtgtccgtaattt-aaaaatgaaaagtaaac 216  Q
    ||||||| |||||| |  ||||||| |||| |||| |||||||||||||  ||||| ||||||| |||||||||||||||||    
T  22659308 atatgattgtttattatgttaatatattaatttttaaaaaaatattttatggtgtctgtaatttaaaaaatgaaaagtaaac 22659389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 136 - 222
Target Start/End: Complemental strand, 46007826 - 46007738
Alignment:
Q  136 atatgatggtttatcacattaatatgttaactttttaaaaaatattttacagt--gtccgtaatttaaaaatgaaaagtaaactctccc 222  Q
    |||||||  |||||||  ||||||||||||||||||||||||   ||| || |  ||| |||||||||||||||||||||||| |||||    
T  46007826 atatgatcatttatcatgttaatatgttaactttttaaaaaaacattttcattatgtcggtaatttaaaaatgaaaagtaaaccctccc 46007738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 145 - 217
Target Start/End: Original strand, 36278379 - 36278451
Alignment:
Q  145 tttatcacattaatatgttaactttttaaaaaatattttacagtgtccgtaatttaaaaatgaaaagtaaact 217  Q
    ||||||| ||||||| ||||| ||| ||||||||||||   |||||| |||||||||||| ||||| ||||||    
T  36278379 tttatcatattaatacgttaaatttataaaaaatatttcgtagtgtctgtaatttaaaaacgaaaactaaact 36278451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 154 - 252
Target Start/End: Original strand, 41174482 - 41174585
Alignment:
Q  154 ttaatatgttaactttttaaaaaatattttacagtgtccgtaatttaaaaatgaaaagtaaa-----ctctcccttctcttcataaaccctctatccaaa 248  Q
    |||||||| ||||||||||||||  |||| | ||||||| ||| ||||||||||||| ||||     | |||||||| | || ||||||||| |||||||    
T  41174482 ttaatatgctaactttttaaaaaccatttcatagtgtccctaaattaaaaatgaaaactaaaccatcccctcccttcccctcctaaaccctccatccaaa 41174581  T
Q  249 caca 252  Q
    ||||    
T  41174582 caca 41174585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 136 - 219
Target Start/End: Original strand, 44784111 - 44784193
Alignment:
Q  136 atatgatggtttatcacattaatatgttaactttttaaaaaatattttacagtgtccgtaatttaaaaatgaaaagtaaactct 219  Q
    ||||||| |||||| |  ||||||||||||| ||| | |||||||||   ||||| ||||||||||||| ||||||||||||||    
T  44784111 atatgatcgtttataaggttaatatgttaacgttt-agaaaatatttcgtagtgttcgtaatttaaaaacgaaaagtaaactct 44784193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 168 - 214
Target Start/End: Complemental strand, 23813194 - 23813148
Alignment:
Q  168 ttttaaaaaatattttacagtgtccgtaatttaaaaatgaaaagtaa 214  Q
    |||| ||||| |||||| |||||||||||||||| ||||||||||||    
T  23813194 ttttcaaaaacattttatagtgtccgtaatttaacaatgaaaagtaa 23813148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 136 - 198
Target Start/End: Original strand, 26167056 - 26167118
Alignment:
Q  136 atatgatggtttatcacattaatatgttaactttttaaaaaatattttacagtgtccgtaatt 198  Q
    ||||||| ||||||||  |||||||||||||| || |||||| |||| | |||||||||||||    
T  26167056 atatgatcgtttatcatgttaatatgttaactcttaaaaaaacatttcaaagtgtccgtaatt 26167118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 176 - 222
Target Start/End: Original strand, 37711282 - 37711328
Alignment:
Q  176 aatattttacagtgtccgtaatttaaaaatgaaaagtaaactctccc 222  Q
    ||||||||| ||||||||||||||||||||||||  ||||| |||||    
T  37711282 aatattttatagtgtccgtaatttaaaaatgaaatctaaaccctccc 37711328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 167 - 221
Target Start/End: Complemental strand, 54001200 - 54001146
Alignment:
Q  167 tttttaaaaaatattttacagtgtccgtaatttaaaaatgaaaagtaaactctcc 221  Q
    |||||||||| ||||||| | |||||||||||||||||  |||||||| ||||||    
T  54001200 tttttaaaaattattttataatgtccgtaatttaaaaaacaaaagtaagctctcc 54001146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 193 - 230
Target Start/End: Original strand, 2247977 - 2248014
Alignment:
Q  193 gtaatttaaaaatgaaaagtaaactctcccttctcttc 230  Q
    |||||||||||| |||||||||||||||||||| ||||    
T  2247977 gtaatttaaaaaagaaaagtaaactctcccttcacttc 2248014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 169 - 214
Target Start/End: Complemental strand, 11842401 - 11842356
Alignment:
Q  169 tttaaaaaatattttacagtgtccgtaatttaaaaatgaaaagtaa 214  Q
    |||||||||||||||| |||||| ||||||| |||| |||||||||    
T  11842401 tttaaaaaatattttatagtgtctgtaatttgaaaaagaaaagtaa 11842356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 173 - 214
Target Start/End: Complemental strand, 45911368 - 45911327
Alignment:
Q  173 aaaaatattttacagtgtccgtaatttaaaaatgaaaagtaa 214  Q
    |||||||||||| ||| ||||||||||||||| |||||||||    
T  45911368 aaaaatattttatagtatccgtaatttaaaaaagaaaagtaa 45911327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 189 - 252
Target Start/End: Original strand, 1968531 - 1968599
Alignment:
Q  189 gtccgtaatttaaaaatgaaaagtaaact-----ctcccttctcttcataaaccctctatccaaacaca 252  Q
    |||||||||||||||||||||| ||||||     |||||||| | || ||||||||| |||||||||||    
T  1968531 gtccgtaatttaaaaatgaaaattaaactcttccctcccttcccctcctaaaccctcaatccaaacaca 1968599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 170 - 214
Target Start/End: Complemental strand, 21694981 - 21694937
Alignment:
Q  170 ttaaaaaatattttacagtgtccgtaatttaaaaatgaaaagtaa 214  Q
    |||||||  |||||| ||||||||||||||||||| |||||||||    
T  21694981 ttaaaaaccattttatagtgtccgtaatttaaaaaagaaaagtaa 21694937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 136 - 176
Target Start/End: Complemental strand, 45132626 - 45132586
Alignment:
Q  136 atatgatggtttatcacattaatatgttaactttttaaaaa 176  Q
    ||||||| ||||||||  |||||||||||||||||||||||    
T  45132626 atatgatcgtttatcattttaatatgttaactttttaaaaa 45132586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 60; Significance: 1e-25; HSPs: 26)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 136 - 227
Target Start/End: Complemental strand, 34235132 - 34235041
Alignment:
Q  136 atatgatggtttatcacattaatatgttaactttttaaaaaatattttacagtgtccgtaatttaaaaatgaaaagtaaactctcccttctc 227  Q
    ||||||| |||||||| |||||||||||||||||||| |||| |||| | |||||||||||||||||||||||||||||| |||||| ||||    
T  34235132 atatgattgtttatcatattaatatgttaactttttataaaacatttcatagtgtccgtaatttaaaaatgaaaagtaaattctcccctctc 34235041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 136 - 215
Target Start/End: Complemental strand, 24970290 - 24970211
Alignment:
Q  136 atatgatggtttatcacattaatatgttaactttttaaaaaatattttacagtgtccgtaatttaaaaatgaaaagtaaa 215  Q
    ||||||| ||||||||  ||||||||||||||||||||||||||||| | ||| ||||||||||||||||||||||||||    
T  24970290 atatgatcgtttatcaagttaatatgttaactttttaaaaaatatttcatagtatccgtaatttaaaaatgaaaagtaaa 24970211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 136 - 221
Target Start/End: Complemental strand, 33655233 - 33655148
Alignment:
Q  136 atatgatggtttatcacattaatatgttaactttttaaaaaatattttacagtgtccgtaatttaaaaatgaaaagtaaactctcc 221  Q
    |||||||  |||||||  |||||||||||||||||||||||| |||| | ||||||||||||||||||||||||||||||| ||||    
T  33655233 atatgatcatttatcatgttaatatgttaactttttaaaaaacatttcatagtgtccgtaatttaaaaatgaaaagtaaaccctcc 33655148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 144 - 222
Target Start/End: Original strand, 47390983 - 47391061
Alignment:
Q  144 gtttatcacattaatatgttaactttttaaaaaatattttacagtgtccgtaatttaaaaatgaaaagtaaactctccc 222  Q
    ||||||||  ||||||||||||| ||||||||||| ||||| |||||||||||||||||||||||||  ||||||||||    
T  47390983 gtttatcatgttaatatgttaacattttaaaaaatgttttatagtgtccgtaatttaaaaatgaaaaccaaactctccc 47391061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 136 - 221
Target Start/End: Complemental strand, 40196657 - 40196572
Alignment:
Q  136 atatgatggtttatcacattaatatgttaactttttaaaaaatattttacagtgtccgtaatttaaaaatgaaaagtaaactctcc 221  Q
    ||||||| ||||||||  || |||||||||||||||| |||| |||||| ||||||||||||| ||||||||||||||||| ||||    
T  40196657 atatgattgtttatcaggttgatatgttaactttttataaaacattttatagtgtccgtaattcaaaaatgaaaagtaaaccctcc 40196572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 144 - 252
Target Start/End: Complemental strand, 32872898 - 32872790
Alignment:
Q  144 gtttatcacattaatatgttaactttttaaaaaatattttacagtgtccgtaatttaaaaatgaaaagtaaactctcccttctcttcataaaccctctat 243  Q
    ||||||||  ||||||||||||||||||||||| ||||||| | | | ||||||||||||| |||||||||||||||| ||| | || ||||||||  ||    
T  32872898 gtttatcatgttaatatgttaactttttaaaaagtattttataatattcgtaatttaaaaaagaaaagtaaactctcctttcccctcctaaacccttcat 32872799  T
Q  244 ccaaacaca 252  Q
    | |||||||    
T  32872798 ctaaacaca 32872790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 136 - 215
Target Start/End: Original strand, 18231705 - 18231784
Alignment:
Q  136 atatgatggtttatcacattaatatgttaactttttaaaaaatattttacagtgtccgtaatttaaaaatgaaaagtaaa 215  Q
    ||||||| ||||||||  |||||||||||||||||||||||| |||| | |||||  |||||||||||||||||||||||    
T  18231705 atatgatcgtttatcatgttaatatgttaactttttaaaaaacatttcatagtgtttgtaatttaaaaatgaaaagtaaa 18231784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 136 - 222
Target Start/End: Complemental strand, 4833656 - 4833570
Alignment:
Q  136 atatgatggtttatcacattaatatgttaactttttaaaaaatattttacagtgtccgtaatttaaaaatgaaaagtaaactctccc 222  Q
    ||||||| ||||||||  |||||| |||||||||||| |||| |||| | |||||| |||||||||||||||||||||||| |||||    
T  4833656 atatgattgtttatcatgttaataggttaactttttataaaacatttcatagtgtctgtaatttaaaaatgaaaagtaaaccctccc 4833570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 136 - 252
Target Start/End: Complemental strand, 13425245 - 13425124
Alignment:
Q  136 atatgatggtttatcacattaatatgttaactttttaaaaaatattttacagtgtccgtaatttaaaaatgaaaagtaaac-----tctcccttctcttc 230  Q
    ||||||| ||||||||  |||||||||| |||||| ||||||||||||  |||||| ||||||||||||| |||| |||||     ||| ||||| | ||    
T  13425245 atatgattgtttatcatgttaatatgttgacttttgaaaaaatattttgtagtgtctgtaatttaaaaataaaaaataaaccatcctcttccttcccctc 13425146  T
Q  231 ataaaccctctatccaaacaca 252  Q
     |||||||||||||||||||||    
T  13425145 ctaaaccctctatccaaacaca 13425124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 154 - 216
Target Start/End: Original strand, 42306467 - 42306529
Alignment:
Q  154 ttaatatgttaactttttaaaaaatattttacagtgtccgtaatttaaaaatgaaaagtaaac 216  Q
    |||||||| ||||||||||||||| |||| | ||||||||||||||||||||||||| |||||    
T  42306467 ttaatatgctaactttttaaaaaacatttcatagtgtccgtaatttaaaaatgaaaattaaac 42306529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 144 - 222
Target Start/End: Original strand, 43230363 - 43230440
Alignment:
Q  144 gtttatcacattaatatgttaactttttaaaaaatattttacagtgtccgtaatttaaaaatgaaaagtaaactctccc 222  Q
    ||||||||  ||||||||||||||||| |||||| | || | |||||||||||||||||||| ||||||||||||||||    
T  43230363 gtttatcatgttaatatgttaacttttaaaaaaaaaattca-agtgtccgtaatttaaaaataaaaagtaaactctccc 43230440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 145 - 222
Target Start/End: Complemental strand, 40572350 - 40572274
Alignment:
Q  145 tttatcacattaatatgttaactttttaaaaaatattttacagtgtccgtaatttaaaaatgaaaagtaaactctccc 222  Q
    |||||||  ||||||||||||||||| ||||||||||||| ||  ||||||||||||||||||||  |||||||||||    
T  40572350 tttatcatgttaatatgttaactttt-aaaaaatattttatagcatccgtaatttaaaaatgaaatctaaactctccc 40572274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 177 - 221
Target Start/End: Complemental strand, 30891078 - 30891034
Alignment:
Q  177 atattttacagtgtccgtaatttaaaaatgaaaagtaaactctcc 221  Q
    |||||||| ||||||||||||||||||||||||||||||||||||    
T  30891078 atattttatagtgtccgtaatttaaaaatgaaaagtaaactctcc 30891034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 154 - 251
Target Start/End: Original strand, 10315770 - 10315872
Alignment:
Q  154 ttaatatgttaactttttaaaaaatattttacagtgtccgtaatttaaaaatgaaaagtaaa-----ctctcccttctcttcataaaccctctatccaaa 248  Q
    |||||||||||| ||||||||||| |||| | |||||||||| |||||||||||||| ||||     |||||||||| | || |||||| || |||||||    
T  10315770 ttaatatgttaaatttttaaaaaacatttcatagtgtccgtattttaaaaatgaaaaataaatcaccctctcccttcccctcctaaaccttccatccaaa 10315869  T
Q  249 cac 251  Q
    |||    
T  10315870 cac 10315872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 136 - 252
Target Start/End: Complemental strand, 41497082 - 41496961
Alignment:
Q  136 atatgatggtttatcacattaatatgttaactttttaaaaaatattttacagtgtccgtaatttaaaaatgaaaagtaaa-----ctctcccttctcttc 230  Q
    |||||||  |||||||  |||||||||||| ||||||||||| ||||   | |||||||||||||||||| |||||||||     | |||||||| | ||    
T  41497082 atatgatcatttatcatgttaatatgttaaatttttaaaaaacatttcctattgtccgtaatttaaaaataaaaagtaaatcatcccctcccttcccctc 41496983  T
Q  231 ataaaccctctatccaaacaca 252  Q
     ||||||||| |||||||||||    
T  41496982 ctaaaccctccatccaaacaca 41496961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 144 - 215
Target Start/End: Complemental strand, 13771063 - 13770994
Alignment:
Q  144 gtttatcacattaatatgttaactttttaaaaaatattttacagtgtccgtaatttaaaaatgaaaagtaaa 215  Q
    ||||||||  ||||||||||||||||||| ||  ||||||| |||||||||||||||||||| | |||||||    
T  13771063 gtttatcatgttaatatgttaactttttataa--tattttatagtgtccgtaatttaaaaataataagtaaa 13770994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 155 - 222
Target Start/End: Complemental strand, 1051605 - 1051539
Alignment:
Q  155 taatatgttaactttttaaaaaatattttacagtgtccgtaatttaaaaatgaaaagtaaactctccc 222  Q
    ||||||||||||||||||||||| |||| |  ||||||||||||||||||||||| || ||| |||||    
T  1051605 taatatgttaactttttaaaaaacatttcat-gtgtccgtaatttaaaaatgaaatgttaaccctccc 1051539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 136 - 222
Target Start/End: Original strand, 25887311 - 25887398
Alignment:
Q  136 atatgatggtttatcacattaatatgttaactttt-taaaaaatattttacagtgtccgtaatttaaaaatgaaaagtaaactctccc 222  Q
    ||||||| |||||||| ||||||||||||||||||  |||||| |||| |   | | |||||||||||||||||| ||||||||||||    
T  25887311 atatgattgtttatcatattaatatgttaacttttaaaaaaaacatttcatgattttcgtaatttaaaaatgaaatgtaaactctccc 25887398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 190 - 253
Target Start/End: Original strand, 34235181 - 34235244
Alignment:
Q  190 tccgtaatttaaaaatgaaaagtaaactctcccttctcttcataaaccctctatccaaacacaa 253  Q
    ||||||||||||||||||||||||||| | | | |||| || ||||||||| ||||||||||||    
T  34235181 tccgtaatttaaaaatgaaaagtaaacaccctcctctcctcctaaaccctcaatccaaacacaa 34235244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 136 - 252
Target Start/End: Original strand, 41008300 - 41008418
Alignment:
Q  136 atatgatggtttatcacattaatatgttaactttttaaaa--aatattttacagtgtccgtaatttaaaaatgaaaagtaaactctcccttctcttcata 233  Q
    ||||||| ||||||||  ||||||||||||||||| || |  || |  | | ||| |||||||||||||||||||| ||||||||| ||||| | || ||    
T  41008300 atatgattgtttatcatgttaatatgttaacttttgaagacaaaaaaatcatagtatccgtaatttaaaaatgaaatgtaaactcttccttcccctccta 41008399  T
Q  234 aaccctctatccaaacaca 252  Q
    ||||||  |||||||||||    
T  41008400 aaccctgcatccaaacaca 41008418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 162 - 214
Target Start/End: Original strand, 19835854 - 19835906
Alignment:
Q  162 ttaactttttaaaaaatattttacagtgtccgtaatttaaaaatgaaaagtaa 214  Q
    |||| |||||||| || |||||| ||| |||||||||||||||||||||||||    
T  19835854 ttaattttttaaagaacattttatagtttccgtaatttaaaaatgaaaagtaa 19835906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 136 - 204
Target Start/End: Complemental strand, 22163234 - 22163167
Alignment:
Q  136 atatgatggtttatcacattaatatgttaactttttaaaaaatattttacagtgtccgtaatttaaaaa 204  Q
    ||||||| ||||||||  ||||||||||| |||| ||||||| |||| | |||||||||||||||||||    
T  22163234 atatgatcgtttatcatgttaatatgtta-ctttctaaaaaacatttcatagtgtccgtaatttaaaaa 22163167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 136 - 204
Target Start/End: Complemental strand, 22221942 - 22221875
Alignment:
Q  136 atatgatggtttatcacattaatatgttaactttttaaaaaatattttacagtgtccgtaatttaaaaa 204  Q
    ||||||| ||||||||  ||||||||||| |||| ||||||| |||| | |||||||||||||||||||    
T  22221942 atatgatcgtttatcatgttaatatgtta-ctttctaaaaaacatttcatagtgtccgtaatttaaaaa 22221875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 167 - 225
Target Start/End: Complemental strand, 30592347 - 30592289
Alignment:
Q  167 tttttaaaaaatattttacagtgtccgtaatttaaaaatgaaaagtaaactctcccttc 225  Q
    ||||||||||  |||||| |||||| |||||||||||| ||||||||| | ||||||||    
T  30592347 tttttaaaaatcattttatagtgtctgtaatttaaaaaagaaaagtaagccctcccttc 30592289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 189 - 222
Target Start/End: Original strand, 31571642 - 31571675
Alignment:
Q  189 gtccgtaatttaaaaatgaaaagtaaactctccc 222  Q
    |||||||||||||||| |||||||||||||||||    
T  31571642 gtccgtaatttaaaaaagaaaagtaaactctccc 31571675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 174 - 214
Target Start/End: Original strand, 42283139 - 42283179
Alignment:
Q  174 aaaatattttacagtgtccgtaatttaaaaatgaaaagtaa 214  Q
    |||||||| || ||||||||||||| |||||||||||||||    
T  42283139 aaaatattctatagtgtccgtaattcaaaaatgaaaagtaa 42283179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 59; Significance: 5e-25; HSPs: 37)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 136 - 230
Target Start/End: Complemental strand, 4373691 - 4373597
Alignment:
Q  136 atatgatggtttatcacattaatatgttaactttttaaaaaatattttacagtgtccgtaatttaaaaatgaaaagtaaactctcccttctcttc 230  Q
    |||||||  |||||||  ||||||||||||||||| ||||||||||| |||||||||||||||||||||| |||||||||||||||  |||||||    
T  4373691 atatgatcatttatcatgttaatatgttaacttttaaaaaaatatttcacagtgtccgtaatttaaaaattaaaagtaaactctccactctcttc 4373597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 159 - 222
Target Start/End: Original strand, 1657955 - 1658018
Alignment:
Q  159 atgttaactttttaaaaaatattttacagtgtccgtaatttaaaaatgaaaagtaaactctccc 222  Q
    ||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| |||||    
T  1657955 atgttaactttttaaaaaacattttatagtgtccgtaatttaaaaatgaaaagtaaaccctccc 1658018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 147 - 252
Target Start/End: Complemental strand, 8502949 - 8502839
Alignment:
Q  147 tatcacattaatatgttaactttttaaaaaatattttacagtgtccgtaatttaaaaatgaaaagtaaactctccc-----ttctcttcataaaccctct 241  Q
    ||||| |||||| ||||||||||||||||||||||| | | ||||||||||||||||||||||||| ||| |||||     ||| ||||||||||| ||     
T  8502949 tatcatattaatttgttaactttttaaaaaatatttcataatgtccgtaatttaaaaatgaaaagtgaaccctcccatccattcccttcataaaccatcc 8502850  T
Q  242 atccaaacaca 252  Q
    |||||||||||    
T  8502849 atccaaacaca 8502839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 136 - 214
Target Start/End: Original strand, 13634830 - 13634908
Alignment:
Q  136 atatgatggtttatcacattaatatgttaactttttaaaaaatattttacagtgtccgtaatttaaaaatgaaaagtaa 214  Q
    ||||||| ||||||||  |||||||||||||||||||||||| |||| | ||||| |||||||||||||||||||||||    
T  13634830 atatgatcgtttatcatgttaatatgttaactttttaaaaaacatttcatagtgttcgtaatttaaaaatgaaaagtaa 13634908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 145 - 252
Target Start/End: Complemental strand, 14245204 - 14245092
Alignment:
Q  145 tttatcacattaatatgttaactttttaaaaaatattttacagtgtccgtaatttaaaaatgaaaagtaaa-----ctctcccttctcttcataaaccct 239  Q
    |||||||  |||||||||||||||| ||||||| |||| ||||||||||||||||||||| ||||||||||     | |||||||| | || ||||||||    
T  14245204 tttatcatgttaatatgttaactttctaaaaaacatttcacagtgtccgtaatttaaaaaagaaaagtaaatcctcccctcccttcccctcctaaaccct 14245105  T
Q  240 ctatccaaacaca 252  Q
    | |||||||||||    
T  14245104 caatccaaacaca 14245092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 136 - 216
Target Start/End: Complemental strand, 36392275 - 36392195
Alignment:
Q  136 atatgatggtttatcacattaatatgttaactttttaaaaaatattttacagtgtccgtaatttaaaaatgaaaagtaaac 216  Q
    ||||||| ||||||||  ||||||||||||||||||| |||| |||| | |||||| ||||||||||||||||||||||||    
T  36392275 atatgatcgtttatcatgttaatatgttaactttttataaaacatttcatagtgtctgtaatttaaaaatgaaaagtaaac 36392195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 144 - 222
Target Start/End: Original strand, 26415020 - 26415098
Alignment:
Q  144 gtttatcacattaatatgttaactttttaaaaaatattttacagtgtccgtaatttaaaaatgaaaagtaaactctccc 222  Q
    ||||||||  ||||||||||||||||||| |||| |||| | |||||| |||| |||||||||||||||||||||||||    
T  26415020 gtttatcatgttaatatgttaactttttataaaacatttcatagtgtctgtaacttaaaaatgaaaagtaaactctccc 26415098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 154 - 220
Target Start/End: Original strand, 43544 - 43611
Alignment:
Q  154 ttaatatgttaactttttaaaaaatattttacagtgtccgtaa-tttaaaaatgaaaagtaaactctc 220  Q
    ||||||||||||||||| ||||||||||| | ||||| ||||| ||||||||||||||||||||||||    
T  43544 ttaatatgttaacttttcaaaaaatatttcatagtgttcgtaattttaaaaatgaaaagtaaactctc 43611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 136 - 215
Target Start/End: Complemental strand, 20513570 - 20513491
Alignment:
Q  136 atatgatggtttatcacattaatatgttaactttttaaaaaatattttacagtgtccgtaatttaaaaatgaaaagtaaa 215  Q
    ||||||| ||||||||   ||||||||||||||||||||||| |||| | |||||| ||| |||||||||||||||||||    
T  20513570 atatgatcgtttatcatgataatatgttaactttttaaaaaacatttcatagtgtctgtagtttaaaaatgaaaagtaaa 20513491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 136 - 215
Target Start/End: Complemental strand, 28279601 - 28279522
Alignment:
Q  136 atatgatggtttatcacattaatatgttaactttttaaaaaatattttacagtgtccgtaatttaaaaatgaaaagtaaa 215  Q
    |||||||  |||||||  |||||||||||||||||||||||| |||| | | ||||| ||||||||||||||||||||||    
T  28279601 atatgatcatttatcatgttaatatgttaactttttaaaaaacatttcataatgtccataatttaaaaatgaaaagtaaa 28279522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 136 - 210
Target Start/End: Original strand, 7544255 - 7544329
Alignment:
Q  136 atatgatggtttatcacattaatatgttaactttttaaaaaatattttacagtgtccgtaatttaaaaatgaaaa 210  Q
    ||||||| |||||| |  |||||||| ||||||||||||||| |||| | |||||||||||||||||||||||||    
T  7544255 atatgattgtttattatgttaatatgctaactttttaaaaaacatttcatagtgtccgtaatttaaaaatgaaaa 7544329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 136 - 210
Target Start/End: Complemental strand, 20146991 - 20146917
Alignment:
Q  136 atatgatggtttatcacattaatatgttaactttttaaaaaatattttacagtgtccgtaatttaaaaatgaaaa 210  Q
    ||||||| | ||||||  |||||||||||||||||||||||| |||| | |||| ||||||||||||||||||||    
T  20146991 atatgatcgcttatcatgttaatatgttaactttttaaaaaacatttcatagtgaccgtaatttaaaaatgaaaa 20146917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 190 - 252
Target Start/End: Original strand, 20147048 - 20147110
Alignment:
Q  190 tccgtaatttaaaaatgaaaagtaaactctcccttctcttcataaaccctctatccaaacaca 252  Q
    ||||||||||||||||||||||||||| |||||||| | || ||||||||| |||||||||||    
T  20147048 tccgtaatttaaaaatgaaaagtaaaccctcccttcccctcctaaaccctcaatccaaacaca 20147110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 136 - 252
Target Start/End: Original strand, 37551526 - 37551645
Alignment:
Q  136 atatgatggtttatcacattaatatgttaactttttaaaaaatattttacagtgtccgtaatttaaaaatgaaaagtaaac-----tctcccttctcttc 230  Q
    ||||||| ||||||||  ||||||||||||||||||| |||| ||||  ||||||| ||| ||||||||||||||||||||     ||||||||  | ||    
T  37551526 atatgatcgtttatcatgttaatatgttaactttttataaaacattt--cagtgtctgtagtttaaaaatgaaaagtaaaccatcctctccctttccctc 37551623  T
Q  231 ataaaccctctatccaaacaca 252  Q
     ||||||||| |||||||||||    
T  37551624 gtaaaccctccatccaaacaca 37551645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 136 - 252
Target Start/End: Original strand, 37654356 - 37654475
Alignment:
Q  136 atatgatggtttatcacattaatatgttaactttttaaaaaatattttacagtgtccgtaatttaaaaatgaaaagtaaac-----tctcccttctcttc 230  Q
    ||||||| ||||||||  ||||||||||||||||||| |||| ||||  ||||||| ||| ||||||||||||||||||||     ||||||||  | ||    
T  37654356 atatgatcgtttatcatgttaatatgttaactttttataaaacattt--cagtgtctgtagtttaaaaatgaaaagtaaaccatcctctccctttccctc 37654453  T
Q  231 ataaaccctctatccaaacaca 252  Q
     ||||||||| |||||||||||    
T  37654454 gtaaaccctccatccaaacaca 37654475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 136 - 209
Target Start/End: Original strand, 9856999 - 9857072
Alignment:
Q  136 atatgatggtttatcacattaatatgttaactttttaaaaaatattttacagtgtccgtaatttaaaaatgaaa 209  Q
    ||||||| |||||| |  |||||||||||||||||||||||| |||| | ||||||||||| ||||||||||||    
T  9856999 atatgatcgtttattatgttaatatgttaactttttaaaaaacatttcatagtgtccgtaacttaaaaatgaaa 9857072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 155 - 220
Target Start/End: Original strand, 36363170 - 36363235
Alignment:
Q  155 taatatgttaactttttaaaaaatattttacagtgtccgtaatttaaaaatgaaaagtaaactctc 220  Q
    ||||||||||||||| ||||| | |||||| ||| ||||||||||||||||||||||| |||||||    
T  36363170 taatatgttaactttctaaaagacattttatagtatccgtaatttaaaaatgaaaagtgaactctc 36363235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 136 - 252
Target Start/End: Original strand, 37607013 - 37607134
Alignment:
Q  136 atatgatggtttatcacattaatatgttaactttttaaaaaatattttacagtgtccgtaatttaaaaatgaaaagtaaac-----tctcccttctcttc 230  Q
    ||||||| ||||||||  ||||||||||||||||||| |||| |||| | ||| || ||| ||||||||||||||||||||     ||||||||  | ||    
T  37607013 atatgatcgtttatcatgttaatatgttaactttttataaaacatttcatagtatctgtattttaaaaatgaaaagtaaaccatcatctccctttccctc 37607112  T
Q  231 ataaaccctctatccaaacaca 252  Q
     ||||||||| |||||||||||    
T  37607113 gtaaaccctccatccaaacaca 37607134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 136 - 252
Target Start/End: Original strand, 37779222 - 37779343
Alignment:
Q  136 atatgatggtttatcacattaatatgttaactttttaaaaaatattttacagtgtccgtaatttaaaaatgaaaagtaaac-----tctcccttctcttc 230  Q
    ||||||| ||||||||  ||||||||||||||||||| |||| |||| | ||| || ||| ||||||||||||||||||||     ||||||||  | ||    
T  37779222 atatgatcgtttatcatgttaatatgttaactttttataaaacatttcatagtatctgtagtttaaaaatgaaaagtaaaccatcatctccctttccctc 37779321  T
Q  231 ataaaccctctatccaaacaca 252  Q
     ||||||||| |||||||||||    
T  37779322 gtaaaccctccatccaaacaca 37779343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 136 - 252
Target Start/End: Complemental strand, 10072772 - 10072661
Alignment:
Q  136 atatgatggtttatcacattaatatgttaactttttaaaaaatattttacagtgtccgtaatttaaaaatgaaaagtaaactctcccttctcttcataaa 235  Q
    ||||||| ||||||||  ||||||||||||||||||||||||||||| | |||   |  |||||||| ||||||||||||| ||||| |||     ||||    
T  10072772 atatgatcgtttatcatgttaatatgttaactttttaaaaaatatttcatagtactcacaatttaaatatgaaaagtaaaccctcccctct-----taaa 10072678  T
Q  236 ccctctatccaaacaca 252  Q
    ||||| |||||||||||    
T  10072677 ccctccatccaaacaca 10072661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 154 - 230
Target Start/End: Complemental strand, 11419299 - 11419223
Alignment:
Q  154 ttaatatgttaactttttaaaaaatattttacagtgtccgtaatttaaaaatgaaaagtaaactctcccttctcttc 230  Q
    |||||||||| ||||||| ||||| |||||| | ||||| |||||| |||||||||||||||||||||  |||||||    
T  11419299 ttaatatgtttacttttttaaaaacattttatattgtccttaatttgaaaatgaaaagtaaactctcctctctcttc 11419223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 154 - 215
Target Start/End: Complemental strand, 16501897 - 16501836
Alignment:
Q  154 ttaatatgttaactttttaaaaaatattttacagtgtccgtaatttaaaaatgaaaagtaaa 215  Q
    ||||||||||||||||| |||||| |||| | | ||||||||||||||||||||||| ||||    
T  16501897 ttaatatgttaacttttaaaaaaacatttcataatgtccgtaatttaaaaatgaaaactaaa 16501836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 136 - 220
Target Start/End: Complemental strand, 9798737 - 9798653
Alignment:
Q  136 atatgatggtttatcacattaatatgttaactttttaaaaaatattttacagtgtccgtaatttaaaaatgaaaagtaaactctc 220  Q
    ||||||| |||| |||  |||| || || ||||||||||||| ||||   ||| |||||||||||||||||||||||||||||||    
T  9798737 atatgatcgtttttcatgttaaaatattgactttttaaaaaacatttcgtagtatccgtaatttaaaaatgaaaagtaaactctc 9798653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 168 - 227
Target Start/End: Original strand, 2556167 - 2556226
Alignment:
Q  168 ttttaaaaaatattttacagtgtccgtaatttaaaaatgaaaagtaaactctcccttctc 227  Q
    ||||||||||||||||| |   ||| ||||||||||||||||||||||||||| ||||||    
T  2556167 ttttaaaaaatattttatatcatccataatttaaaaatgaaaagtaaactctctcttctc 2556226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 167 - 239
Target Start/End: Complemental strand, 6597885 - 6597809
Alignment:
Q  167 tttttaaaaaat-attttacagtgtccgtaatttaaaaatgaaaagtaaactctccc---ttctcttcataaaccct 239  Q
    |||| ||||||| |||||||| ||||||||||||||||| |||||||||||| ||||   |||||||| ||||||||    
T  6597885 ttttcaaaaaatcattttacaatgtccgtaatttaaaaaagaaaagtaaactatccctcattctcttcctaaaccct 6597809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 155 - 217
Target Start/End: Original strand, 10650552 - 10650614
Alignment:
Q  155 taatatgttaactttttaaaaaatattttacagtgtccgtaatttaaaaatgaaaagtaaact 217  Q
    |||||||||||||||||| |||| |||| | ||| |||||||||||||||  |||||||||||    
T  10650552 taatatgttaactttttataaaacatttcatagtatccgtaatttaaaaacaaaaagtaaact 10650614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 136 - 222
Target Start/End: Original strand, 16938598 - 16938684
Alignment:
Q  136 atatgatggtttatcacattaatatgttaactttttaaaaaatattttacagtgtccgtaatttaaaaatgaaaagtaaactctccc 222  Q
    |||||||  |||||||  |||| ||||||||| ||||||||| |||| | |||||| |||||||||||||||||  ||||| |||||    
T  16938598 atatgatcatttatcatgttaacatgttaactctttaaaaaacatttcatagtgtcagtaatttaaaaatgaaatctaaaccctccc 16938684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 156 - 217
Target Start/End: Complemental strand, 17780340 - 17780278
Alignment:
Q  156 aatatgttaactttttaaaaaat-attttacagtgtccgtaatttaaaaatgaaaagtaaact 217  Q
    ||||||||||||||||||||||  |||||| | | |||||||||||||| |||||||||||||    
T  17780340 aatatgttaactttttaaaaaaacattttataatatccgtaatttaaaactgaaaagtaaact 17780278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 136 - 222
Target Start/End: Complemental strand, 29002331 - 29002245
Alignment:
Q  136 atatgatggtttatcacattaatatgttaactttttaaaaaatattttacagtgtccgtaatttaaaaatgaaaagtaaactctccc 222  Q
    ||||||| ||||||||  ||||||||||   |||  |||||| |||||| ||||| | ||||||||||||||||||||||| |||||    
T  29002331 atatgatcgtttatcatgttaatatgttgtttttaaaaaaaacattttatagtgttcataatttaaaaatgaaaagtaaaccctccc 29002245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 171 - 252
Target Start/End: Complemental strand, 40305755 - 40305674
Alignment:
Q  171 taaaaaatattttacagtgtccgtaatttaaaaatgaaaagtaaactctcccttctcttcataaaccctctatccaaacaca 252  Q
    |||||| ||||||| | |||| |||||||||||| ||||| ||| | |||||||| | || ||||||||| |||||||||||    
T  40305755 taaaaattattttataatgtctgtaatttaaaaaagaaaactaagccctcccttcccctcctaaaccctccatccaaacaca 40305674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 138 - 222
Target Start/End: Complemental strand, 32727900 - 32727816
Alignment:
Q  138 atgatggtttatcacattaatatgttaactttttaaaaaatattttacagtgtccgtaatttaaaaatgaaaagtaaactctccc 222  Q
    ||||| ||||||||  ||||||||||   |||||||||||||||| | | |  ||||||||||||||| ||| ||||||||||||    
T  32727900 atgatcgtttatcatgttaatatgttcgttttttaaaaaatatttcataatacccgtaatttaaaaataaaatgtaaactctccc 32727816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 136 - 215
Target Start/End: Complemental strand, 17024349 - 17024270
Alignment:
Q  136 atatgatggtttatcacattaatatgttaactttttaaaaaatattttacagtgtccgtaatttaaaaatgaaaagtaaa 215  Q
    ||||||| |||| |||  |||||||| |||||||||||| || |||| | | |||| | |||||||||||||||||||||    
T  17024349 atatgatcgtttttcatgttaatatgataactttttaaagaacatttcataatgtctgcaatttaaaaatgaaaagtaaa 17024270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 145 - 210
Target Start/End: Original strand, 4423339 - 4423404
Alignment:
Q  145 tttatcacattaatatgttaactttttaaaaaatattttacagtgtccgtaatttaaaaatgaaaa 210  Q
    ||||| || |||||||| ||| |||| ||||||||||| | | ||| |||||||||||||||||||    
T  4423339 tttattacgttaatatgctaaattttaaaaaaatatttcataatgttcgtaatttaaaaatgaaaa 4423404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 164 - 221
Target Start/End: Complemental strand, 13839825 - 13839768
Alignment:
Q  164 aactttttaaaaaatattttacagtgtccgtaatttaaaaatgaaaagtaaactctcc 221  Q
    ||||||| |||| | |||||| ||||||| ||||||||||| ||||||||| ||||||    
T  13839825 aacttttcaaaatacattttatagtgtccataatttaaaaaagaaaagtaagctctcc 13839768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 173 - 210
Target Start/End: Original strand, 14245202 - 14245239
Alignment:
Q  173 aaaaatattttacagtgtccgtaatttaaaaatgaaaa 210  Q
    ||||| |||| |||||||||||||||||||||||||||    
T  14245202 aaaaacatttcacagtgtccgtaatttaaaaatgaaaa 14245239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #36
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 186 - 222
Target Start/End: Complemental strand, 2550427 - 2550391
Alignment:
Q  186 agtgtccgtaatttaaaaatgaaaagtaaactctccc 222  Q
    |||||| |||||||||||||||||||||||| |||||    
T  2550427 agtgtctgtaatttaaaaatgaaaagtaaaccctccc 2550391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #37
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 189 - 252
Target Start/End: Complemental strand, 26414965 - 26414897
Alignment:
Q  189 gtccgtaatttaaaaatgaaaagtaaa-----ctctcccttctcttcataaaccctctatccaaacaca 252  Q
    |||||||||||||||| ||||||||||     | |||||||||| || ||||||||| |||||||||||    
T  26414965 gtccgtaatttaaaaacgaaaagtaaaccctcccctcccttctcctcctaaaccctcaatccaaacaca 26414897  T

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Target: chr3 (Bit Score: 59; Significance: 5e-25; HSPs: 29)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 136 - 222
Target Start/End: Original strand, 24560336 - 24560422
Alignment:
Q  136 atatgatggtttatcacattaatatgttaactttttaaaaaatattttacagtgtccgtaatttaaaaatgaaaagtaaactctccc 222  Q
    ||||||| ||||||||  |||||||||||||||||||||||| |||| | |||||| ||||||||||||||||||||||||||||||    
T  24560336 atatgatcgtttatcatgttaatatgttaactttttaaaaaacatttcatagtgtcggtaatttaaaaatgaaaagtaaactctccc 24560422  T

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Target: chr3; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 136 - 216
Target Start/End: Complemental strand, 41110446 - 41110366
Alignment:
Q  136 atatgatggtttatcacattaatatgttaactttttaaaaaatattttacagtgtccgtaatttaaaaatgaaaagtaaac 216  Q
    ||||||| ||||||||  ||||||||||||||||||| ||||||||| | |||||||||||||||||||||||||||||||    
T  41110446 atatgattgtttatcatgttaatatgttaactttttataaaatatttcatagtgtccgtaatttaaaaatgaaaagtaaac 41110366  T

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Target: chr3; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 136 - 250
Target Start/End: Complemental strand, 9312596 - 9312482
Alignment:
Q  136 atatgatggtttatcacattaatatgttaactttttaaaaaatattttacagtgtccgtaatttaaaaatgaaaagtaaactctcccttctcttcataaa 235  Q
    ||||||| ||||||||  ||||||||||||||||||| ||||||||| | |||||| ||||||||||||||||||  |||| |||||||| | |  ||||    
T  9312596 atatgattgtttatcatgttaatatgttaactttttacaaaatatttcatagtgtctgtaatttaaaaatgaaaatcaaaccctcccttcccctattaaa 9312497  T
Q  236 ccctctatccaaaca 250  Q
    ||||| |||||||||    
T  9312496 ccctcaatccaaaca 9312482  T

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Target: chr3; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 154 - 222
Target Start/End: Complemental strand, 37102256 - 37102188
Alignment:
Q  154 ttaatatgttaactttttaaaaaatattttacagtgtccgtaatttaaaaatgaaaagtaaactctccc 222  Q
    |||||||||||||||||||||||| |||| | ||||||||||||||||||||||||| ||||| |||||    
T  37102256 ttaatatgttaactttttaaaaaacatttcatagtgtccgtaatttaaaaatgaaaactaaaccctccc 37102188  T

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Target: chr3; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 136 - 229
Target Start/End: Complemental strand, 18654725 - 18654632
Alignment:
Q  136 atatgatggtttatcacattaatatgttaactttttaaaaaatattttacagtgtccgtaatttaaaaatgaaaagtaaactctcccttctctt 229  Q
    |||||||  |||||||  |||||||||||||| || ||||||||||||| || |||||||||||||||||||||  ||||| ||||| ||||||    
T  18654725 atatgatcatttatcatgttaatatgttaactcttcaaaaaatattttatagggtccgtaatttaaaaatgaaatctaaaccctcccatctctt 18654632  T

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Target: chr3; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 144 - 221
Target Start/End: Original strand, 52474042 - 52474119
Alignment:
Q  144 gtttatcacattaatatgttaactttttaaaaaatattttacagtgtccgtaatttaaaaatgaaaagtaaactctcc 221  Q
    |||||||| |||||||||||||||||||| ||||||||| | ||  |||||||||||||||| |||||||||| ||||    
T  52474042 gtttatcatattaatatgttaactttttacaaaatatttcataggatccgtaatttaaaaataaaaagtaaaccctcc 52474119  T

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Target: chr3; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 154 - 222
Target Start/End: Complemental strand, 30200195 - 30200127
Alignment:
Q  154 ttaatatgttaactttttaaaaaatattttacagtgtccgtaatttaaaaatgaaaagtaaactctccc 222  Q
    ||||||||| |||||||||||||| |||| | ||||||||||||||||||||||||| ||||| |||||    
T  30200195 ttaatatgtaaactttttaaaaaacatttcatagtgtccgtaatttaaaaatgaaaactaaaccctccc 30200127  T

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Target: chr3; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 145 - 252
Target Start/End: Complemental strand, 10748406 - 10748299
Alignment:
Q  145 tttatcacattaatatgttaactttttaaaaaatattttacagtgtccgtaatttaaaaatgaaaagtaaactctcccttctcttcataaaccctctatc 244  Q
    |||||||  |||||||||||||||||||||||| |||||| | || |||||||||||||||| ||| |    ||||||||| | || ||||||||| |||    
T  10748406 tttatcatgttaatatgttaactttttaaaaaacattttataatgcccgtaatttaaaaatgtaaactctcttctcccttcccctcctaaaccctccatc 10748307  T
Q  245 caaacaca 252  Q
    ||||||||    
T  10748306 caaacaca 10748299  T

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Target: chr3; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 136 - 215
Target Start/End: Complemental strand, 41040075 - 41039996
Alignment:
Q  136 atatgatggtttatcacattaatatgttaactttttaaaaaatattttacagtgtccgtaatttaaaaatgaaaagtaaa 215  Q
    ||||||| ||||||||  ||||||||||||||||||| ||||||||| | |||||| ||||||||||| |||||| ||||    
T  41040075 atatgattgtttatcatgttaatatgttaactttttataaaatatttcatagtgtctgtaatttaaaattgaaaattaaa 41039996  T

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Target: chr3; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 154 - 216
Target Start/End: Complemental strand, 220504 - 220442
Alignment:
Q  154 ttaatatgttaactttttaaaaaatattttacagtgtccgtaatttaaaaatgaaaagtaaac 216  Q
    |||||||||||||||||||||||| |||| | | ||||||||||||||||||||||| |||||    
T  220504 ttaatatgttaactttttaaaaaacatttcataatgtccgtaatttaaaaatgaaaactaaac 220442  T

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Target: chr3; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 136 - 222
Target Start/End: Original strand, 21773901 - 21773987
Alignment:
Q  136 atatgatggtttatcacattaatatgttaactttttaaaaaatattttacagtgtccgtaatttaaaaatgaaaagtaaactctccc 222  Q
    ||||||| ||||||||  | |||||||||||||||||||||| ||||   ||||| |||||||||||||| |||||||||| |||||    
T  21773901 atatgattgtttatcatgtaaatatgttaactttttaaaaaacatttcctagtgttcgtaatttaaaaataaaaagtaaaccctccc 21773987  T

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Target: chr3; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 156 - 222
Target Start/End: Complemental strand, 28581291 - 28581225
Alignment:
Q  156 aatatgttaactttttaaaaaatattttacagtgtccgtaatttaaaaatgaaaagtaaactctccc 222  Q
    ||||||||||||||||||||||||||| ||| | || |||||||||||||||||| ||||| |||||    
T  28581291 aatatgttaactttttaaaaaatatttcacaatatctgtaatttaaaaatgaaaactaaaccctccc 28581225  T

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Target: chr3; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 154 - 216
Target Start/End: Original strand, 46556282 - 46556344
Alignment:
Q  154 ttaatatgttaactttttaaaaaatattttacagtgtccgtaatttaaaaatgaaaagtaaac 216  Q
    ||||||| ||||||||||||||||||| | | ||||||||||||| |||||||||||||||||    
T  46556282 ttaatatcttaactttttaaaaaatatgtcatagtgtccgtaattgaaaaatgaaaagtaaac 46556344  T

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Target: chr3; HSP #14
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 136 - 216
Target Start/End: Original strand, 37807199 - 37807279
Alignment:
Q  136 atatgatggtttatcacattaatatgttaactttttaaaaaatattttacagtgtccgtaatttaaaaatgaaaagtaaac 216  Q
    ||||||| ||||||||  ||||||| |||||||||||||||| |||| | |||||||  |||||||||| |||||||||||    
T  37807199 atatgatcgtttatcatgttaatatattaactttttaaaaaacatttcatagtgtccaaaatttaaaaacgaaaagtaaac 37807279  T

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Target: chr3; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 136 - 210
Target Start/End: Original strand, 52185135 - 52185207
Alignment:
Q  136 atatgatggtttatcacattaatatgttaactttttaaaaaatattttacagtgtccgtaatttaaaaatgaaaa 210  Q
    ||||||| ||||||||  ||||||||||||||||||| ||||||||||  ||||||| |||||||||||| ||||    
T  52185135 atatgattgtttatcatgttaatatgttaactttttataaaatatttt--agtgtccataatttaaaaataaaaa 52185207  T

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Target: chr3; HSP #16
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 136 - 222
Target Start/End: Complemental strand, 25655095 - 25655009
Alignment:
Q  136 atatgatggtttatcacattaatatgttaactttttaaaaaatattttacagtgtccgtaatttaaaaatgaaaagtaaactctccc 222  Q
    |||||||  ||||||| ||||||||||||||| || |||||| ||||   ||||| |||||| |||||||||||||||||| |||||    
T  25655095 atatgatcatttatcatattaatatgttaactcttcaaaaaacatttcttagtgttcgtaatataaaaatgaaaagtaaaccctccc 25655009  T

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Target: chr3; HSP #17
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 144 - 222
Target Start/End: Complemental strand, 36569020 - 36568943
Alignment:
Q  144 gtttatcacattaatatgttaactttttaaaaaatattttacagtgtccgtaatttaaaaatgaaaagtaaactctccc 222  Q
    ||||||||  |||||||||||||||||| ||||| |||| | ||||| || |||||||||||||||| |||||||||||    
T  36569020 gtttatcatgttaatatgttaactttttgaaaaacatttcatagtgttcgaaatttaaaaatgaaaa-taaactctccc 36568943  T

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Target: chr3; HSP #18
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 167 - 251
Target Start/End: Complemental strand, 26135891 - 26135807
Alignment:
Q  167 tttttaaaaaatattttacagtgtccgtaatttaaaaatgaaaagtaaactctcccttctcttcataaaccctctatccaaacac 251  Q
    ||||||||||| |||||||| ||| | |||||||||||  |||||| |   ||||||||||||| ||||||||| ||||||||||    
T  26135891 tttttaaaaaacattttacattgttcataatttaaaaaataaaagtgagtcctcccttctcttcctaaaccctcaatccaaacac 26135807  T

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Target: chr3; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 144 - 222
Target Start/End: Complemental strand, 16275822 - 16275744
Alignment:
Q  144 gtttatcacattaatatgttaactttttaaaaaatattttacagtgtccgtaatttaaaaatgaaaagtaaactctccc 222  Q
    ||||||||  |||||| |||||||||||| |||| |||| | | |||||| |||||||||||||| ||| |||||||||    
T  16275822 gtttatcatgttaataagttaactttttataaaacatttcataatgtccgaaatttaaaaatgaatagtgaactctccc 16275744  T

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Target: chr3; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 136 - 182
Target Start/End: Complemental strand, 43005864 - 43005818
Alignment:
Q  136 atatgatggtttatcacattaatatgttaactttttaaaaaatattt 182  Q
    |||||||  ||||||| ||||||||||||||||||||||||||||||    
T  43005864 atatgatattttatcatattaatatgttaactttttaaaaaatattt 43005818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 168 - 213
Target Start/End: Complemental strand, 40463964 - 40463919
Alignment:
Q  168 ttttaaaaaatattttacagtgtccgtaatttaaaaatgaaaagta 213  Q
    |||||||||| | |||| ||||||||||||||||||||||||||||    
T  40463964 ttttaaaaaacaatttatagtgtccgtaatttaaaaatgaaaagta 40463919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 167 - 217
Target Start/End: Complemental strand, 17474301 - 17474250
Alignment:
Q  167 tttttaaaaaat-attttacagtgtccgtaatttaaaaatgaaaagtaaact 217  Q
    |||||||||||| |||||| | ||||||||||||||||| ||||||||||||    
T  17474301 tttttaaaaaattattttataatgtccgtaatttaaaaaagaaaagtaaact 17474250  T

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Target: chr3; HSP #23
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 167 - 222
Target Start/End: Original strand, 17474356 - 17474411
Alignment:
Q  167 tttttaaaaaatattttacagtgtccgtaatttaaaaatgaaaagtaaactctccc 222  Q
    |||||||||||||||||||| | | |||||||||||||  |||||| |||||||||    
T  17474356 tttttaaaaaatattttacattattcgtaatttaaaaaataaaagttaactctccc 17474411  T

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Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 172 - 221
Target Start/End: Original strand, 26135952 - 26136001
Alignment:
Q  172 aaaaaatattttacagtgtccgtaatttaaaaatgaaaagtaaactctcc 221  Q
    ||||| ||||||| | ||||||||||||||||| ||||||||||| ||||    
T  26135952 aaaaattattttataatgtccgtaatttaaaaaagaaaagtaaaccctcc 26136001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 136 - 209
Target Start/End: Complemental strand, 27542056 - 27541983
Alignment:
Q  136 atatgatggtttatcacattaatatgttaactttttaaaaaatattttacagtgtccgtaatttaaaaatgaaa 209  Q
    ||||||| ||||||||  |||||||||||  ||||||| || ||||| | ||||||  ||||||||||||||||    
T  27542056 atatgatcgtttatcatgttaatatgttagatttttaacaagtatttcatagtgtctctaatttaaaaatgaaa 27541983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 136 - 204
Target Start/End: Complemental strand, 2387885 - 2387817
Alignment:
Q  136 atatgatggtttatcacattaatatgttaactttttaaaaaatattttacagtgtccgtaatttaaaaa 204  Q
    ||||||| ||||||||  ||| ||| ||||||| |||||||| |||  | |||||||||||||||||||    
T  2387885 atatgatcgtttatcatgttattattttaacttattaaaaaacattccatagtgtccgtaatttaaaaa 2387817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 167 - 250
Target Start/End: Original strand, 10943764 - 10943852
Alignment:
Q  167 tttttaaaaaatattttacagtgtccgtaatttaaaaatgaaaagtaaactctcccttctct-----tcataaaccctctatccaaaca 250  Q
    |||| |||||| ||||| || ||| |||||||||||||| |||||| ||| ||||| |||||     |||||||||||| |||||||||    
T  10943764 ttttaaaaaaacattttgcattgttcgtaatttaaaaattaaaagtgaaccctcccctctctttccctcataaaccctcaatccaaaca 10943852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 171 - 223
Target Start/End: Complemental strand, 18086070 - 18086018
Alignment:
Q  171 taaaaaatattttacagtgtccgtaatttaaaaatgaaaagtaaactctccct 223  Q
    ||||||| |||||| | |||| |||||||||||| ||||||||| ||||||||    
T  18086070 taaaaaacattttataatgtctgtaatttaaaaaagaaaagtaagctctccct 18086018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 189 - 252
Target Start/End: Original strand, 41110493 - 41110561
Alignment:
Q  189 gtccgtaatttaaaaatgaaaagtaaa-----ctctcccttctcttcataaaccctctatccaaacaca 252  Q
    |||||||||||||||| ||||||||||     |||||||||| | ||| |||||||| |||||||||||    
T  41110493 gtccgtaatttaaaaacgaaaagtaaaccttcctctcccttcccctcacaaaccctcaatccaaacaca 41110561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0067 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: scaffold0067
Description:

Target: scaffold0067; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 136 - 222
Target Start/End: Complemental strand, 39312 - 39226
Alignment:
Q  136 atatgatggtttatcacattaatatgttaactttttaaaaaatattttacagtgtccgtaatttaaaaatgaaaagtaaactctccc 222  Q
    |||||||  |||||||  |||||||||||||||||||||||| |||| | ||||||||||||||||||||||||||||||| |||||    
T  39312 atatgatcatttatcatgttaatatgttaactttttaaaaaacatttcatagtgtccgtaatttaaaaatgaaaagtaaaccctccc 39226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 55; Significance: 1e-22; HSPs: 22)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 136 - 222
Target Start/End: Original strand, 1300739 - 1300825
Alignment:
Q  136 atatgatggtttatcacattaatatgttaactttttaaaaaatattttacagtgtccgtaatttaaaaatgaaaagtaaactctccc 222  Q
    ||||||| ||||||||  ||||||||||||||||||| ||||||||| | | ||||||||||||||||||||||||||||| |||||    
T  1300739 atatgattgtttatcaggttaatatgttaactttttataaaatatttcatattgtccgtaatttaaaaatgaaaagtaaaccctccc 1300825  T

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Target: chr6; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 136 - 222
Target Start/End: Complemental strand, 9721263 - 9721177
Alignment:
Q  136 atatgatggtttatcacattaatatgttaactttttaaaaaatattttacagtgtccgtaatttaaaaatgaaaagtaaactctccc 222  Q
    ||||||| |||||||| ||||||||||||||||||||||||| |||  | ||||||||||||||||||||||||| ||||| |||||    
T  9721263 atatgattgtttatcaaattaatatgttaactttttaaaaaacattccatagtgtccgtaatttaaaaatgaaaaataaaccctccc 9721177  T

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Target: chr6; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 136 - 222
Target Start/End: Original strand, 33236070 - 33236155
Alignment:
Q  136 atatgatggtttatcacattaatatgttaactttttaaaaaatattttacagtgtccgtaatttaaaaatgaaaagtaaactctccc 222  Q
    ||||||| ||||||||  |||||||||||||||||||||||| |||| | ||||||||||||||||||||||||||||| |||||||    
T  33236070 atatgattgtttatcatgttaatatgttaactttttaaaaaa-atttcatagtgtccgtaatttaaaaatgaaaagtaatctctccc 33236155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 136 - 252
Target Start/End: Complemental strand, 9719156 - 9719035
Alignment:
Q  136 atatgatggtttatcacattaatatgttaactttttaaaaaatattttacagtgtccgtaatttaaaaatgaaaagtaaa-----ctctcccttctcttc 230  Q
    ||||||| |||||||| ||||||||||||||||||||||||| |||  | ||||||||||||||||||||||||| ||||     | |||||||| | ||    
T  9719156 atatgattgtttatcaaattaatatgttaactttttaaaaaacattccatagtgtccgtaatttaaaaatgaaaaataaatcctcccctcccttcccctc 9719057  T
Q  231 ataaaccctctatccaaacaca 252  Q
     ||||||||| |||||||||||    
T  9719056 ctaaaccctcaatccaaacaca 9719035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 157 - 220
Target Start/End: Complemental strand, 19278138 - 19278075
Alignment:
Q  157 atatgttaactttttaaaaaatattttacagtgtccgtaatttaaaaatgaaaagtaaactctc 220  Q
    |||||| ||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||    
T  19278138 atatgtcaactttttaaaaaatattttatagtgtcagtaatttaaaaatgaaaagtaaactctc 19278075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 145 - 215
Target Start/End: Original strand, 1390447 - 1390517
Alignment:
Q  145 tttatcacattaatatgttaactttttaaaaaatattttacagtgtccgtaatttaaaaatgaaaagtaaa 215  Q
    |||||||  ||||||||||||||||||||||||||||| | |||||| |||||||||||||||||||||||    
T  1390447 tttatcatgttaatatgttaactttttaaaaaatatttcatagtgtcagtaatttaaaaatgaaaagtaaa 1390517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 136 - 214
Target Start/End: Complemental strand, 4097637 - 4097559
Alignment:
Q  136 atatgatggtttatcacattaatatgttaactttttaaaaaatattttacagtgtccgtaatttaaaaatgaaaagtaa 214  Q
    ||||||| ||||||||  |||||||||||||||||||||||| |||| | |||||||||||||||||||| ||||||||    
T  4097637 atatgatcgtttatcatgttaatatgttaactttttaaaaaacatttcaaagtgtccgtaatttaaaaattaaaagtaa 4097559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 144 - 222
Target Start/End: Original strand, 31849237 - 31849315
Alignment:
Q  144 gtttatcacattaatatgttaactttttaaaaaatattttacagtgtccgtaatttaaaaatgaaaagtaaactctccc 222  Q
    ||||||||| |||||||||||| ||||||||| | |||||| ||||||||||||||||||||||||||| ||| |||||    
T  31849237 gtttatcacgttaatatgttaattttttaaaagacattttatagtgtccgtaatttaaaaatgaaaagtgaaccctccc 31849315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 154 - 252
Target Start/End: Original strand, 34176472 - 34176574
Alignment:
Q  154 ttaatatgttaactttttaaaaaatattttacagtgtccgtaatttaaaaatgaaaagtaaactctcccttctct----tcataaaccctctatccaaac 249  Q
    ||||||||||||||||  ||||||||||| | ||||||||||||||||||||||||| |||||||||   |||||    |||||||||||| ||||||||    
T  34176472 ttaatatgttaactttaaaaaaaatatttcatagtgtccgtaatttaaaaatgaaaactaaactctcatctctcttccctcataaaccctccatccaaac 34176571  T
Q  250 aca 252  Q
    |||    
T  34176572 aca 34176574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 136 - 222
Target Start/End: Original strand, 10818335 - 10818421
Alignment:
Q  136 atatgatggtttatcacattaatatgttaactttttaaaaaatattttacagtgtccgtaatttaaaaatgaaaagtaaactctccc 222  Q
    |||||||  |||||||  ||||||||||||  |||||||||| |||| | ||||||||||||||||||||||||||||||| |||||    
T  10818335 atatgatcatttatcatgttaatatgttaatattttaaaaaacatttcatagtgtccgtaatttaaaaatgaaaagtaaaccctccc 10818421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 144 - 222
Target Start/End: Complemental strand, 21606961 - 21606883
Alignment:
Q  144 gtttatcacattaatatgttaactttttaaaaaatattttacagtgtccgtaatttaaaaatgaaaagtaaactctccc 222  Q
    ||||||||  ||||||||||||||||||| |||| |||| | ||| ||||||||||||||||||||||||||| |||||    
T  21606961 gtttatcatgttaatatgttaactttttataaaacatttcatagtttccgtaatttaaaaatgaaaagtaaaccctccc 21606883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 155 - 215
Target Start/End: Original strand, 1395774 - 1395834
Alignment:
Q  155 taatatgttaactttttaaaaaatattttacagtgtccgtaatttaaaaatgaaaagtaaa 215  Q
    ||||||||||| ||||||||||| ||| ||||||||  |||||||||||||||||||||||    
T  1395774 taatatgttaattttttaaaaaacattctacagtgttagtaatttaaaaatgaaaagtaaa 1395834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 136 - 216
Target Start/End: Original strand, 2900029 - 2900109
Alignment:
Q  136 atatgatggtttatcacattaatatgttaactttttaaaaaatattttacagtgtccgtaatttaaaaatgaaaagtaaac 216  Q
    ||||||| ||||||||  ||||||||||||||| ||| |||| |||| | ||||||  |||||||||||||||||||||||    
T  2900029 atatgattgtttatcatgttaatatgttaacttcttataaaacatttcatagtgtctataatttaaaaatgaaaagtaaac 2900109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 162 - 212
Target Start/End: Complemental strand, 7776046 - 7775996
Alignment:
Q  162 ttaactttttaaaaaatattttacagtgtccgtaatttaaaaatgaaaagt 212  Q
    ||||||||||||||||||||||| ||||| |||||||| ||||||||||||    
T  7776046 ttaactttttaaaaaatattttatagtgttcgtaattttaaaatgaaaagt 7775996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 145 - 215
Target Start/End: Original strand, 33041590 - 33041660
Alignment:
Q  145 tttatcacattaatatgttaactttttaaaaaatattttacagtgtccgtaatttaaaaatgaaaagtaaa 215  Q
    |||||||  |||||||||||||||||||||||| |||| | ||| |||||||||||||||| |||| ||||    
T  33041590 tttatcatgttaatatgttaactttttaaaaaacatttcatagtatccgtaatttaaaaataaaaaataaa 33041660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 144 - 209
Target Start/End: Complemental strand, 10348915 - 10348850
Alignment:
Q  144 gtttatcacattaatatgttaactttttaaaaaatattttacagtgtccgtaatttaaaaatgaaa 209  Q
    |||||||  ||||||||||||||||||||||| |||||| | | | ||||||||||||||||||||    
T  10348915 gtttatcgtattaatatgttaactttttaaaagatatttcatattatccgtaatttaaaaatgaaa 10348850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 157 - 224
Target Start/End: Original strand, 14515611 - 14515678
Alignment:
Q  157 atatgttaactttttaaaaaatattttacagtgtccgtaatttaaaaatgaaaagtaaactctccctt 224  Q
    ||||||||||| || ||||||||||||| ||||| | ||||||||||||||||  ||||| |||||||    
T  14515611 atatgttaactcttcaaaaaatattttatagtgttcataatttaaaaatgaaatctaaaccctccctt 14515678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 154 - 219
Target Start/End: Complemental strand, 5585409 - 5585343
Alignment:
Q  154 ttaatatgttaactttttaaaaaatattttacagtgtccgtaatttaaaaatg-aaaagtaaactct 219  Q
    ||||||||||| |||||||||||| |||| | ||||| ||||||||||||| | |||||||||||||    
T  5585409 ttaatatgttacctttttaaaaaacatttcatagtgttcgtaatttaaaaaagaaaaagtaaactct 5585343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 157 - 222
Target Start/End: Original strand, 9298625 - 9298691
Alignment:
Q  157 atatgttaactttttaaaaaat-attttacagtgtccgtaatttaaaaatgaaaagtaaactctccc 222  Q
    |||||||||||||||||||||  |||| | | |||||||||||||||| |||||||||||| |||||    
T  9298625 atatgttaactttttaaaaaaacatttcataatgtccgtaatttaaaattgaaaagtaaaccctccc 9298691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 167 - 222
Target Start/End: Original strand, 31799070 - 31799126
Alignment:
Q  167 tttttaaaaaat-attttacagtgtccgtaatttaaaaatgaaaagtaaactctccc 222  Q
    |||||||||||| |||||| | | ||||||||||||||| |||||||||||||||||    
T  31799070 tttttaaaaaattattttataatatccgtaatttaaaaaagaaaagtaaactctccc 31799126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 136 - 176
Target Start/End: Original strand, 25741526 - 25741566
Alignment:
Q  136 atatgatggtttatcacattaatatgttaactttttaaaaa 176  Q
    ||||||| |||||||| |||| |||||||||||||||||||    
T  25741526 atatgatcgtttatcatattattatgttaactttttaaaaa 25741566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 136 - 215
Target Start/End: Complemental strand, 30850037 - 30849960
Alignment:
Q  136 atatgatggtttatcacattaatatgttaactttttaaaaaatattttacagtgtccgtaatttaaaaatgaaaagtaaa 215  Q
    ||||||| ||||||||  ||| ||| ||||  ||||||||||||||||| ||| | ||||||||||||| |||| |||||    
T  30850037 atatgatcgtttatcatgttattattttaa--ttttaaaaaatattttatagtatgcgtaatttaaaaacgaaatgtaaa 30849960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 53; Significance: 2e-21; HSPs: 27)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 154 - 222
Target Start/End: Complemental strand, 36046311 - 36046243
Alignment:
Q  154 ttaatatgttaactttttaaaaaatattttacagtgtccgtaatttaaaaatgaaaagtaaactctccc 222  Q
    |||||||||||||||||||||||| |||||  ||||||||||||||||||||||||| |||||||||||    
T  36046311 ttaatatgttaactttttaaaaaacattttctagtgtccgtaatttaaaaatgaaaaataaactctccc 36046243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 136 - 219
Target Start/End: Original strand, 34209583 - 34209666
Alignment:
Q  136 atatgatggtttatcacattaatatgttaactttttaaaaaatattttacagtgtccgtaatttaaaaatgaaaagtaaactct 219  Q
    ||||||| ||||||||  ||||||||||||||||||||||||||||| | |||||  |||||||||||||||||||||| ||||    
T  34209583 atatgattgtttatcatgttaatatgttaactttttaaaaaatatttcatagtgtttgtaatttaaaaatgaaaagtaatctct 34209666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 136 - 222
Target Start/End: Complemental strand, 15224819 - 15224733
Alignment:
Q  136 atatgatggtttatcacattaatatgttaactttttaaaaaatattttacagtgtccgtaatttaaaaatgaaaagtaaactctccc 222  Q
    |||||||  |||||||  ||||||||||| |||||||||||| |||| | ||||||||||||||||||||||||||||||| |||||    
T  15224819 atatgatcatttatcatgttaatatgttagctttttaaaaaacatttcatagtgtccgtaatttaaaaatgaaaagtaaacactccc 15224733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 136 - 222
Target Start/End: Complemental strand, 39732854 - 39732768
Alignment:
Q  136 atatgatggtttatcacattaatatgttaactttttaaaaaatattttacagtgtccgtaatttaaaaatgaaaagtaaactctccc 222  Q
    ||||||| ||||||||  ||||||||||||||||||| |||| |||| | | ||| ||||||||||||||||||||||||| |||||    
T  39732854 atatgatcgtttatcatgttaatatgttaactttttataaaacatttcataatgttcgtaatttaaaaatgaaaagtaaaccctccc 39732768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 136 - 226
Target Start/End: Complemental strand, 42316889 - 42316799
Alignment:
Q  136 atatgatggtttatcacattaatatgttaactttttaaaaaatattttacagtgtccgtaatttaaaaatgaaaagtaaactctcccttct 226  Q
    ||||||| ||||||||  |||||| ||||||||||||||||| |||| | |||||  | |||||||||||||||||||||||| |||||||    
T  42316889 atatgatcgtttatcatgttaatacgttaactttttaaaaaacatttcatagtgtttgcaatttaaaaatgaaaagtaaactcccccttct 42316799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 136 - 216
Target Start/End: Original strand, 16565896 - 16565976
Alignment:
Q  136 atatgatggtttatcacattaatatgttaactttttaaaaaatattttacagtgtccgtaatttaaaaatgaaaagtaaac 216  Q
    ||||||| |||||||| ||| |||||||||||||||||||||  ||| | ||| |||||||||||||||| ||||||||||    
T  16565896 atatgatcgtttatcatatttatatgttaactttttaaaaaacgtttcatagtatccgtaatttaaaaataaaaagtaaac 16565976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 159 - 230
Target Start/End: Complemental strand, 8426981 - 8426910
Alignment:
Q  159 atgttaactttttaaaaaatattttacagtgtccgtaatttaaaaatgaaaagtaaactctcccttctcttc 230  Q
    ||||||||||||||||||| |||| | ||||||| |||||||||||| |||||||||| |||||||| ||||    
T  8426981 atgttaactttttaaaaaacatttcatagtgtccttaatttaaaaattaaaagtaaaccctcccttcccttc 8426910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 144 - 222
Target Start/End: Original strand, 23748222 - 23748300
Alignment:
Q  144 gtttatcacattaatatgttaactttttaaaaaatattttacagtgtccgtaatttaaaaatgaaaagtaaactctccc 222  Q
    ||||||||  |||||||||||||||||||||| | |||| | |||||||||| |||||||||||||||| ||| |||||    
T  23748222 gtttatcatgttaatatgttaactttttaaaagacatttcatagtgtccgtagtttaaaaatgaaaagtgaaccctccc 23748300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 144 - 230
Target Start/End: Complemental strand, 36347658 - 36347572
Alignment:
Q  144 gtttatcacattaatatgttaactttttaaaaaatattttacagtgtccgtaatttaaaaatgaaaagtaaactctcccttctcttc 230  Q
    ||||||||  |||||||||||||| |||||||||||| | | ||| |||||||| |||||||||||||| ||||||| |||| ||||    
T  36347658 gtttatcatgttaatatgttaactatttaaaaaatatgtcatagtatccgtaatataaaaatgaaaagtgaactctctcttcccttc 36347572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 136 - 217
Target Start/End: Original strand, 27926672 - 27926753
Alignment:
Q  136 atatgatggtttatcacattaatatgttaactttttaaaaaatattttacagtgtccgtaatttaaaaatgaaaagtaaact 217  Q
    ||||||| ||||||||  ||||||||||||||||||||  || |||| | ||| ||||||||||||||||||||| ||||||    
T  27926672 atatgatcgtttatcatgttaatatgttaactttttaaccaaaatttaatagtatccgtaatttaaaaatgaaaaataaact 27926753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 162 - 222
Target Start/End: Original strand, 1583222 - 1583282
Alignment:
Q  162 ttaactttttaaaaaatattttacagtgtccgtaatttaaaaatgaaaagtaaactctccc 222  Q
    |||||||||||||||| |||| | ||||||||||||||||||||||||||| ||| |||||    
T  1583222 ttaactttttaaaaaacatttcatagtgtccgtaatttaaaaatgaaaagtgaaccctccc 1583282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 172 - 252
Target Start/End: Complemental strand, 12541854 - 12541774
Alignment:
Q  172 aaaaaatattttacagtgtccgtaatttaaaaatgaaaagtaaactctcccttctcttcataaaccctctatccaaacaca 252  Q
    ||||||||||||| |  |||||||||||||||| |||||||| |||||||| || | || ||||||||| |||||||||||    
T  12541854 aaaaaatattttatatagtccgtaatttaaaaaagaaaagtagactctcccctcccctcctaaaccctcaatccaaacaca 12541774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 145 - 222
Target Start/End: Original strand, 39821797 - 39821874
Alignment:
Q  145 tttatcacattaatatgttaactttttaaaaaatattttacagtgtccgtaatttaaaaatgaaaagtaaactctccc 222  Q
    |||||||  |||||||||||||| |||||| | ||||| | ||||||||||||||||||| ||||| ||||| |||||    
T  39821797 tttatcatgttaatatgttaactctttaaatattatttcatagtgtccgtaatttaaaaaagaaaactaaaccctccc 39821874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 136 - 215
Target Start/End: Complemental strand, 36566976 - 36566896
Alignment:
Q  136 atatgatggtttatcacattaatatgttaactttttaaaaaatatttt-acagtgtccgtaatttaaaaatgaaaagtaaa 215  Q
    |||||||  |||||||  ||||||||||||||||||| |||| | ||| | | ||||||||||||||||||||||||||||    
T  36566976 atatgatcatttatcatgttaatatgttaactttttataaaaaactttcataatgtccgtaatttaaaaatgaaaagtaaa 36566896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 136 - 199
Target Start/End: Original strand, 17379931 - 17379994
Alignment:
Q  136 atatgatggtttatcacattaatatgttaactttttaaaaaatattttacagtgtccgtaattt 199  Q
    ||||||| ||||||||  |||||||| ||||||||||||||| |||| | ||||||||||||||    
T  17379931 atatgattgtttatcatgttaatatgctaactttttaaaaaacatttcatagtgtccgtaattt 17379994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 167 - 213
Target Start/End: Original strand, 887164 - 887210
Alignment:
Q  167 tttttaaaaaatattttacagtgtccgtaatttaaaaatgaaaagta 213  Q
    ||||||||||| ||||||||| |||||||||||||||| ||||||||    
T  887164 tttttaaaaaacattttacagcgtccgtaatttaaaaaagaaaagta 887210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 136 - 230
Target Start/End: Original strand, 12751934 - 12752028
Alignment:
Q  136 atatgatggtttatcacattaatatgttaactttttaaaaaatattttacagtgtccgtaatttaaaaatgaaaagtaaactctcccttctcttc 230  Q
    ||||||| |||||| | |||| ||| |||| |||| ||||||||||| | ||||||| |||||| |||| |||||| |||| ||||| |||||||    
T  12751934 atatgatcgtttattatattattatattaatttttaaaaaaatatttcatagtgtccataattttaaaacgaaaagcaaaccctcccctctcttc 12752028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 144 - 229
Target Start/End: Complemental strand, 19566938 - 19566852
Alignment:
Q  144 gtttatcacattaatatgttaactttttaaaaaat-attttacagtgtccgtaatttaaaaatgaaaagtaaactctcccttctctt 229  Q
    ||||||||  |||||||| |||||||||||||||  |||| | |||||| ||||||||||| ||| |||||||| |||| |||||||    
T  19566938 gtttatcattttaatatgctaactttttaaaaaaacatttcatagtgtctgtaatttaaaactgagaagtaaaccctccattctctt 19566852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 144 - 252
Target Start/End: Original strand, 9631687 - 9631800
Alignment:
Q  144 gtttatcacattaatatgttaactttttaaaaaatattttacagtgtccgtaatttaaaaatgaaaagtaaac-----tctcccttctcttcataaaccc 238  Q
    ||||||||  |||||||||||||||||||||  | |||| |  |||||||||||||||||| ||||||| |||     ||||||||  | || |||||||    
T  9631687 gtttatcatgttaatatgttaactttttaaaggacatttcatggtgtccgtaatttaaaaacgaaaagttaaccctcttctccctttccctcctaaaccc 9631786  T
Q  239 tctatccaaacaca 252  Q
    || |||||||||||    
T  9631787 tccatccaaacaca 9631800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 189 - 230
Target Start/End: Original strand, 36347713 - 36347754
Alignment:
Q  189 gtccgtaatttaaaaatgaaaagtaaactctcccttctcttc 230  Q
    |||||||||||||||| |||||||||||||||||||| ||||    
T  36347713 gtccgtaatttaaaaaagaaaagtaaactctcccttcccttc 36347754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 136 - 200
Target Start/End: Original strand, 12541885 - 12541949
Alignment:
Q  136 atatgatggtttatcacattaatatgttaactttttaaaaaatattttacagtgtccgtaattta 200  Q
    ||||||| ||||||||  ||||| |||||||||||||||||| |||||| ||| || ||||||||    
T  12541885 atatgatcgtttatcatgttaatgtgttaactttttaaaaaacattttatagtatctgtaattta 12541949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 155 - 222
Target Start/End: Original strand, 40022510 - 40022578
Alignment:
Q  155 taatatgttaactttttaaaaaat-attttacagtgtccgtaatttaaaaatgaaaagtaaactctccc 222  Q
    ||||||||| |||||||||||||  |||| | |||||| ||||||||||||||||| |||||| |||||    
T  40022510 taatatgtttactttttaaaaaaacatttcatagtgtctgtaatttaaaaatgaaatgtaaaccctccc 40022578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 159 - 222
Target Start/End: Original strand, 7681386 - 7681449
Alignment:
Q  159 atgttaactttttaaaaaatattttacagtgtccgtaatttaaaaatgaaaagtaaactctccc 222  Q
    |||||||||||| ||||||||||| | | | |||| ||||||||||| |||||||||| |||||    
T  7681386 atgttaacttttaaaaaaatatttcataatatccgcaatttaaaaataaaaagtaaaccctccc 7681449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 172 - 210
Target Start/End: Original strand, 9427141 - 9427179
Alignment:
Q  172 aaaaaatattttacagtgtccgtaatttaaaaatgaaaa 210  Q
    |||||| |||||| |||||||||||||||||||||||||    
T  9427141 aaaaaacattttatagtgtccgtaatttaaaaatgaaaa 9427179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 168 - 214
Target Start/End: Original strand, 14196820 - 14196866
Alignment:
Q  168 ttttaaaaaatattttacagtgtccgtaatttaaaaatgaaaagtaa 214  Q
    |||||||||| |||||| ||||| ||||||||||||| |||||||||    
T  14196820 ttttaaaaaacattttatagtgttcgtaatttaaaaaagaaaagtaa 14196866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 138 - 204
Target Start/End: Complemental strand, 28262566 - 28262500
Alignment:
Q  138 atgatggtttatcacattaatatgttaactttttaaaaaatattttacagtgtccgtaatttaaaaa 204  Q
    ||||| ||||||||  ||| ||| ||||||||||||||||||||| | ||||| | |||||||||||    
T  28262566 atgatcgtttatcatgttattatattaactttttaaaaaatatttcatagtgttcataatttaaaaa 28262500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 166 - 230
Target Start/End: Complemental strand, 16713587 - 16713523
Alignment:
Q  166 ctttttaaaaaatattttacagtgtccgtaatttaaaaatgaaaagtaaactctcccttctcttc 230  Q
    ||||| ||||||||||||| | ||| |||||||||||||| |||| | |||| ||||||| ||||    
T  16713587 cttttaaaaaaatattttatattgtacgtaatttaaaaattaaaattgaactatcccttcccttc 16713523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 52; Significance: 7e-21; HSPs: 33)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 154 - 253
Target Start/End: Complemental strand, 29358446 - 29358353
Alignment:
Q  154 ttaatatgttaactttttaaaaaatattttacagtgtccgtaatttaaaaatgaaaagtaaactctcccttctcttcataaaccctctatccaaacacaa 253  Q
    |||||||||||| |||||||||||||||||| |||||||||||||||||||| |||||||||     ||||||| || ||||||||| ||||||||||||    
T  29358446 ttaatatgttaa-tttttaaaaaatattttatagtgtccgtaatttaaaaataaaaagtaaa-----ccttctcctcctaaaccctccatccaaacacaa 29358353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 136 - 222
Target Start/End: Complemental strand, 1026974 - 1026888
Alignment:
Q  136 atatgatggtttatcacattaatatgttaactttttaaaaaatattttacagtgtccgtaatttaaaaatgaaaagtaaactctccc 222  Q
    ||||||| ||||||||  ||||||||||||||||| | ||||||||| | |||||||| |||||||||||||||||||||| |||||    
T  1026974 atatgatcgtttatcatgttaatatgttaacttttgataaaatatttcatagtgtccgcaatttaaaaatgaaaagtaaaccctccc 1026888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 154 - 215
Target Start/End: Original strand, 1281280 - 1281341
Alignment:
Q  154 ttaatatgttaactttttaaaaaatattttacagtgtccgtaatttaaaaatgaaaagtaaa 215  Q
    ||||||||||||||||||||||||||||| | ||||||||||||||||||||||||| ||||    
T  1281280 ttaatatgttaactttttaaaaaatatttcatagtgtccgtaatttaaaaatgaaaactaaa 1281341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 144 - 229
Target Start/End: Original strand, 11785653 - 11785738
Alignment:
Q  144 gtttatcacattaatatgttaactttttaaaaaatattttacagtgtccgtaatttaaaaatgaaaagtaaactctcccttctctt 229  Q
    ||||||||  |||||||| |||||||||||||||||||| | | |||||||||||||||||||||||  |||| ||||||||||||    
T  11785653 gtttatcatgttaatatgctaactttttaaaaaatatttcataatgtccgtaatttaaaaatgaaaatcaaaccctcccttctctt 11785738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 145 - 222
Target Start/End: Complemental strand, 30479833 - 30479756
Alignment:
Q  145 tttatcacattaatatgttaactttttaaaaaatattttacagtgtccgtaatttaaaaatgaaaagtaaactctccc 222  Q
    |||||||| |||||||||||||||||||||| | |||| | |||||| |||||||||||||||||||| |||||||||    
T  30479833 tttatcaccttaatatgttaactttttaaaagacatttcatagtgtctgtaatttaaaaatgaaaagtgaactctccc 30479756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 144 - 216
Target Start/End: Original strand, 30664488 - 30664560
Alignment:
Q  144 gtttatcacattaatatgttaactttttaaaaaatattttacagtgtccgtaatttaaaaatgaaaagtaaac 216  Q
    |||||||| |||||||||||||||||||||||||||||||  | |||||||||||||||| |||||| |||||    
T  30664488 gtttatcatattaatatgttaactttttaaaaaatattttgtaatgtccgtaatttaaaactgaaaaataaac 30664560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 136 - 223
Target Start/End: Complemental strand, 11575531 - 11575444
Alignment:
Q  136 atatgatggtttatcacattaatatgttaactttttaaaaaatattttacagtgtccgtaatttaaaaatgaaaagtaaactctccct 223  Q
    ||||||| ||||||||  |||||||||||||||||||||||| |||| | ||| ||| |||||||| |||||||||||||| ||||||    
T  11575531 atatgatcgtttatcatgttaatatgttaactttttaaaaaacatttcatagtatccttaatttaagaatgaaaagtaaaccctccct 11575444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 136 - 222
Target Start/End: Original strand, 31738542 - 31738628
Alignment:
Q  136 atatgatggtttatcacattaatatgttaactttttaaaaaatattttacagtgtccgtaatttaaaaatgaaaagtaaactctccc 222  Q
    |||||||  |||||||  |||||||||||||| || ||||||||||||| ||||||||||||||||||||||||  ||||| |||||    
T  31738542 atatgatcatttatcatgttaatatgttaactcttcaaaaaatattttatagtgtccgtaatttaaaaatgaaatttaaaccctccc 31738628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 136 - 216
Target Start/End: Complemental strand, 4247642 - 4247563
Alignment:
Q  136 atatgatggtttatcacattaatatgttaactttttaaaaaatattttacagtgtccgtaatttaaaaatgaaaagtaaac 216  Q
    ||||||| ||||||||   |||||||||||||| ||||||||||||||| |||| ||||||||||||||| ||||||||||    
T  4247642 atatgatcgtttatcatgctaatatgttaacttcttaaaaaatattttaaagtg-ccgtaatttaaaaataaaaagtaaac 4247563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 154 - 222
Target Start/End: Complemental strand, 31543179 - 31543111
Alignment:
Q  154 ttaatatgttaactttttaaaaaatattttacagtgtccgtaatttaaaaatgaaaagtaaactctccc 222  Q
    |||||||||||||||||| ||||| |||| | ||| ||||||||||||||||||||||||||| |||||    
T  31543179 ttaatatgttaacttttttaaaaacatttcatagtttccgtaatttaaaaatgaaaagtaaaccctccc 31543111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 167 - 250
Target Start/End: Complemental strand, 33922614 - 33922531
Alignment:
Q  167 tttttaaaaaatattttacagtgtccgtaatttaaaaatgaaaagtaaactctcccttctcttcataaaccctctatccaaaca 250  Q
    |||| ||||||||| ||| |  ||||| |||||||||| |||||||||||||||||||| |||| ||||||||| |||||||||    
T  33922614 ttttaaaaaaatatgttatatagtccggaatttaaaaaagaaaagtaaactctcccttcccttcctaaaccctcaatccaaaca 33922531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 136 - 210
Target Start/End: Complemental strand, 9718604 - 9718530
Alignment:
Q  136 atatgatggtttatcacattaatatgttaactttttaaaaaatattttacagtgtccgtaatttaaaaatgaaaa 210  Q
    ||||||| ||||||||  |||||||| ||||||||||||||  |||| | |||||||||||||||||||||||||    
T  9718604 atatgattgtttatcatgttaatatgctaactttttaaaaaccatttcatagtgtccgtaatttaaaaatgaaaa 9718530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 136 - 222
Target Start/End: Original strand, 36308962 - 36309048
Alignment:
Q  136 atatgatggtttatcacattaatatgttaactttttaaaaaatattttacagtgtccgtaatttaaaaatgaaaagtaaactctccc 222  Q
    ||||||| ||||||||  |||||||||| |||||| |||| |||||| ||| ||| ||||||||||| ||||||||||||| |||||    
T  36308962 atatgattgtttatcatgttaatatgtttacttttaaaaatatatttcacaatgtacgtaatttaaagatgaaaagtaaaccctccc 36309048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 154 - 222
Target Start/End: Original strand, 2248589 - 2248657
Alignment:
Q  154 ttaatatgttaactttttaaaaaatattttacagtgtccgtaatttaaaaatgaaaagtaaactctccc 222  Q
    |||||| |||||||||| ||||||||||| | |||||||||||||||||||| |||||| ||| |||||    
T  2248589 ttaataagttaacttttaaaaaaatatttcatagtgtccgtaatttaaaaataaaaagtgaaccctccc 2248657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 154 - 210
Target Start/End: Original strand, 34634280 - 34634336
Alignment:
Q  154 ttaatatgttaactttttaaaaaatattttacagtgtccgtaatttaaaaatgaaaa 210  Q
    |||||||||||||||||||||| |||||| | |||||||||||||||||||| ||||    
T  34634280 ttaatatgttaactttttaaaagatatttcatagtgtccgtaatttaaaaataaaaa 34634336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 134 - 229
Target Start/End: Complemental strand, 29691049 - 29690954
Alignment:
Q  134 tcatatgatggtttatcacattaatatgttaactttttaaaaaatattttacagtgtccgtaatttaaaaatgaaaagtaaactctcccttctctt 229  Q
    ||||||||| ||||||||  |||||||||||||||||| ||||||||||   ||| || |||  ||| ||||||||||||||||||| | ||||||    
T  29691049 tcatatgatcgtttatcatgttaatatgttaacttttttaaaaatatttcctagtatcagtatgttataaatgaaaagtaaactctctcgtctctt 29690954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 153 - 222
Target Start/End: Original strand, 10028258 - 10028328
Alignment:
Q  153 attaatatgttaactttttaaaa-aatattttacagtgtccgtaatttaaaaatgaaaagtaaactctccc 222  Q
    |||||||||||||||||| |||| ||||||| | |||||||||||||||||| | |||||||||| |||||    
T  10028258 attaatatgttaacttttaaaaaaaatatttcatagtgtccgtaatttaaaagtaaaaagtaaaccctccc 10028328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 154 - 216
Target Start/End: Original strand, 16653086 - 16653148
Alignment:
Q  154 ttaatatgttaactttttaaaaaatattttacagtgtccgtaatttaaaaatgaaaagtaaac 216  Q
    |||||||||||||||||| ||||| |||| | | ||||||||||||||||||||||| |||||    
T  16653086 ttaatatgttaactttttcaaaaacatttcataatgtccgtaatttaaaaatgaaaattaaac 16653148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 136 - 217
Target Start/End: Complemental strand, 37923203 - 37923122
Alignment:
Q  136 atatgatggtttatcacattaatatgttaactttttaaaaaatattttacagtgtccgtaatttaaaaatgaaaagtaaact 217  Q
    |||||||  |||||||  ||||||| |||||| ||||||||| |||| | ||||| | ||||||||||||||||||||||||    
T  37923203 atatgatcatttatcatgttaatattttaactctttaaaaaacatttcatagtgttcataatttaaaaatgaaaagtaaact 37923122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 136 - 216
Target Start/End: Original strand, 7979259 - 7979339
Alignment:
Q  136 atatgatggtttatcacattaatatgttaactttttaaaaaatattttacagtgtccgtaatttaaaaatgaaaagtaaac 216  Q
    |||||||  |||||||  |||||| |||||  |||||| ||| |||| || ||||||||||||||||||||||||||||||    
T  7979259 atatgattatttatcatgttaataagttaaacttttaataaacatttcacggtgtccgtaatttaaaaatgaaaagtaaac 7979339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 144 - 210
Target Start/End: Original strand, 6315189 - 6315255
Alignment:
Q  144 gtttatcacattaatatgttaactttttaaaaaatattttacagtgtccgtaatttaaaaatgaaaa 210  Q
    ||||||||  |||||||||||| ||||| ||||| |||| | |||||||||| ||||||||||||||    
T  6315189 gtttatcaagttaatatgttaatttttttaaaaacatttcatagtgtccgtattttaaaaatgaaaa 6315255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 136 - 222
Target Start/End: Complemental strand, 7503079 - 7502993
Alignment:
Q  136 atatgatggtttatcacattaatatgttaactttttaaaaaatattttacagtgtccgtaatttaaaaatgaaaagtaaactctccc 222  Q
    ||||||| ||||||||  ||||||||||||||||||| |||| |||| | ||| |  |||||||||||||| |||| |||| |||||    
T  7503079 atatgattgtttatcatgttaatatgttaactttttataaaacatttcatagttttggtaatttaaaaatggaaagcaaaccctccc 7502993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 165 - 215
Target Start/End: Original strand, 13405128 - 13405178
Alignment:
Q  165 actttttaaaaaatattttacagtgtccgtaatttaaaaatgaaaagtaaa 215  Q
    |||||| ||||||||||||  | ||||||||||||||||||||||||||||    
T  13405128 acttttaaaaaaatattttttaatgtccgtaatttaaaaatgaaaagtaaa 13405178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 136 - 199
Target Start/End: Original strand, 37032498 - 37032561
Alignment:
Q  136 atatgatggtttatcacattaatatgttaactttttaaaaaatattttacagtgtccgtaattt 199  Q
    ||||||| ||||||||  |||||||||||||||||||||||| | ||   ||||||||||||||    
T  37032498 atatgatagtttatcatcttaatatgttaactttttaaaaaacacttcctagtgtccgtaattt 37032561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 190 - 225
Target Start/End: Original strand, 42650509 - 42650544
Alignment:
Q  190 tccgtaatttaaaaatgaaaagtaaactctcccttc 225  Q
    ||||||||||||||| ||||||||||||||||||||    
T  42650509 tccgtaatttaaaaacgaaaagtaaactctcccttc 42650544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 159 - 252
Target Start/End: Complemental strand, 3726965 - 3726867
Alignment:
Q  159 atgttaactttttaaaaaatattttacagtgtccgtaatttaaaaatgaaaagtaaa-----ctctcccttctcttcataaaccctctatccaaacaca 252  Q
    ||||||||| ||||||||| |||  |  |||||||||||||||||||||||| ||||     || ||||||| | || ||||||||| |||||||||||    
T  3726965 atgttaactatttaaaaaacattccatggtgtccgtaatttaaaaatgaaaaataaaccgtcctttcccttcccctcctaaaccctccatccaaacaca 3726867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 172 - 222
Target Start/End: Original strand, 8815296 - 8815346
Alignment:
Q  172 aaaaaatattttacagtgtccgtaatttaaaaatgaaaagtaaactctccc 222  Q
    |||||| |||||||||||| |||||||||||||| |||||| ||| |||||    
T  8815296 aaaaaacattttacagtgttcgtaatttaaaaattaaaagtgaaccctccc 8815346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 168 - 214
Target Start/End: Original strand, 38198199 - 38198245
Alignment:
Q  168 ttttaaaaaatattttacagtgtccgtaatttaaaaatgaaaagtaa 214  Q
    |||||||||| | |||| |||||| ||||||||||||||||||||||    
T  38198199 ttttaaaaaacactttatagtgtctgtaatttaaaaatgaaaagtaa 38198245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 172 - 252
Target Start/End: Complemental strand, 30365219 - 30365134
Alignment:
Q  172 aaaaaatattttacagtgtccgtaatttaaaaatgaaaagtaaactctccc-----ttctcttcataaaccctctatccaaacaca 252  Q
    |||||||||||||   ||| |||||||||||||| |||||| |||||||||     ||||| || ||||||||| |||||||||||    
T  30365219 aaaaaatattttatgttgttcgtaatttaaaaattaaaagtgaactctcccctcctttctcctcctaaaccctcaatccaaacaca 30365134  T

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Target: chr8; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 189 - 221
Target Start/End: Complemental strand, 7979212 - 7979180
Alignment:
Q  189 gtccgtaatttaaaaatgaaaagtaaactctcc 221  Q
    |||||||||||||||| ||||||||||||||||    
T  7979212 gtccgtaatttaaaaaagaaaagtaaactctcc 7979180  T

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Target: chr8; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 166 - 214
Target Start/End: Original strand, 22591556 - 22591604
Alignment:
Q  166 ctttttaaaaaatattttacagtgtccgtaatttaaaaatgaaaagtaa 214  Q
    |||||| |||||||||||| ||||||| ||||||||| | |||||||||    
T  22591556 cttttttaaaaatattttatagtgtccttaatttaaacaagaaaagtaa 22591604  T

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Target: chr8; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 154 - 182
Target Start/End: Complemental strand, 35694862 - 35694834
Alignment:
Q  154 ttaatatgttaactttttaaaaaatattt 182  Q
    |||||||||||||||||||||||||||||    
T  35694862 ttaatatgttaactttttaaaaaatattt 35694834  T

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Target: chr8; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 167 - 222
Target Start/End: Original strand, 43732836 - 43732892
Alignment:
Q  167 tttttaaaaaat-attttacagtgtccgtaatttaaaaatgaaaagtaaactctccc 222  Q
    |||| ||||||| |||||| | ||||||||||||||||| ||||||||||| |||||    
T  43732836 ttttcaaaaaatcattttataatgtccgtaatttaaaaaagaaaagtaaaccctccc 43732892  T

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Target: scaffold0171 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0171
Description:

Target: scaffold0171; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 144 - 219
Target Start/End: Original strand, 16077 - 16152
Alignment:
Q  144 gtttatcacattaatatgttaactttttaaaaaatattttacagtgtccgtaatttaaaaatgaaaagtaaactct 219  Q
    |||| ||| ||||||||||||||||||||||||| |||| | | | ||||||||||||||||||||| ||||||||    
T  16077 gtttttcatattaatatgttaactttttaaaaaacatttcataatatccgtaatttaaaaatgaaaaataaactct 16152  T

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Target: scaffold0262 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0262
Description:

Target: scaffold0262; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 136 - 222
Target Start/End: Complemental strand, 16421 - 16335
Alignment:
Q  136 atatgatggtttatcacattaatatgttaactttttaaaaaatattttacagtgtccgtaatttaaaaatgaaaagtaaactctccc 222  Q
    ||||||| ||||||||  ||||||||||||| ||||| |||| |||| | ||||| | ||||||||||||||||||||||| |||||    
T  16421 atatgattgtttatcatgttaatatgttaacgttttataaaacatttcatagtgttcataatttaaaaatgaaaagtaaaccctccc 16335  T

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Target: scaffold0294 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0294
Description:

Target: scaffold0294; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 136 - 252
Target Start/End: Original strand, 15382 - 15502
Alignment:
Q  136 atatgatggtttatcacattaatatgttaactttttaaaaaatattttacagtgtccgtaatttaaaaatgaaaagtaaa--ctc---tcccttctcttc 230  Q
    ||||||| ||||||||| |||||||||| || |||||||||| |||  | |||||||||||||||||||| ||||||| |  |||   ||||||| ||||    
T  15382 atatgattgtttatcacgttaatatgttgaccttttaaaaaacattc-atagtgtccgtaatttaaaaataaaaagtagatcctcatttcccttcccttc 15480  T
Q  231 ataaaccctctatccaaacaca 252  Q
     ||||||||| |||||||||||    
T  15481 ctaaaccctccatccaaacaca 15502  T

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Target: scaffold0026 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 156 - 216
Target Start/End: Original strand, 1311 - 1371
Alignment:
Q  156 aatatgttaactttttaaaaaatattttacagtgtccgtaatttaaaaatgaaaagtaaac 216  Q
    |||||||||||||||||||||| |||| | ||||| | |||||||||||||||||||||||    
T  1311 aatatgttaactttttaaaaaacatttcatagtgttcataatttaaaaatgaaaagtaaac 1371  T

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Target: scaffold0026; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 189 - 230
Target Start/End: Complemental strand, 1244 - 1203
Alignment:
Q  189 gtccgtaatttaaaaatgaaaagtaaactctcccttctcttc 230  Q
    |||||||||||||||| ||||||||||||||||| |||||||    
T  1244 gtccgtaatttaaaaaagaaaagtaaactctcccctctcttc 1203  T

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Target: scaffold0096 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0096
Description:

Target: scaffold0096; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 154 - 214
Target Start/End: Original strand, 6720 - 6780
Alignment:
Q  154 ttaatatgttaactttttaaaaaatattttacagtgtccgtaatttaaaaatgaaaagtaa 214  Q
    ||||||| |||| ||||| |||||||||| | ||||| ||||||||||||| |||||||||    
T  6720 ttaatattttaatttttttaaaaatatttcatagtgtgcgtaatttaaaaacgaaaagtaa 6780  T

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Target: scaffold0341 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0341
Description:

Target: scaffold0341; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 145 - 216
Target Start/End: Original strand, 18897 - 18968
Alignment:
Q  145 tttatcacattaatatgttaactttttaaaaaatattttacagtgtccgtaatttaaaaatgaaaagtaaac 216  Q
    |||||||  ||||||| ||||||| |||||||||| || | |||||||   |||||||||||||||||||||    
T  18897 tttatcatgttaatatattaacttcttaaaaaatagttcatagtgtcctcgatttaaaaatgaaaagtaaac 18968  T

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Target: scaffold0007 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 167 - 222
Target Start/End: Original strand, 242366 - 242421
Alignment:
Q  167 tttttaaaaaatattttacagtgtccgtaatttaaaaatgaaaagtaaactctccc 222  Q
    ||||||||||  |||||| | ||||||||||||||||| ||||||||||| |||||    
T  242366 tttttaaaaatcattttataatgtccgtaatttaaaaaagaaaagtaaaccctccc 242421  T

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Target: scaffold0198 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0198
Description:

Target: scaffold0198; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 173 - 222
Target Start/End: Complemental strand, 3235 - 3186
Alignment:
Q  173 aaaaatattttacagtgtccgtaatttaaaaatgaaaagtaaactctccc 222  Q
    ||||| |||| | |||||| |||||||||||| |||||||||||||||||    
T  3235 aaaaacatttcatagtgtctgtaatttaaaaaagaaaagtaaactctccc 3186  T

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