View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3714_high_1 (Length: 460)

Name: NF3714_high_1
Description: NF3714
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3714_high_1
NF3714_high_1
[»] chr2 (6 HSPs)
chr2 (30-455)||(14916310-14916746)
chr2 (52-110)||(30652351-30652407)
chr2 (52-110)||(9184020-9184076)
chr2 (52-110)||(17973953-17974009)
chr2 (52-110)||(25483373-25483429)
chr2 (52-110)||(25490979-25491035)
[»] chr4 (19 HSPs)
chr4 (261-442)||(48515818-48516002)
chr4 (35-253)||(48515572-48515785)
chr4 (61-113)||(12875783-12875833)
chr4 (61-108)||(8028935-8028980)
chr4 (215-251)||(12701267-12701303)
chr4 (36-80)||(12701414-12701458)
chr4 (50-108)||(33467666-33467722)
chr4 (52-110)||(37263166-37263222)
chr4 (52-109)||(19103412-19103467)
chr4 (79-108)||(19907749-19907778)
chr4 (61-121)||(8984620-8984678)
chr4 (61-108)||(13060910-13060955)
chr4 (61-121)||(13696212-13696270)
chr4 (61-121)||(13701332-13701390)
chr4 (61-121)||(13711825-13711883)
chr4 (61-121)||(21304168-21304226)
chr4 (61-121)||(36355015-36355073)
chr4 (61-121)||(39999943-40000001)
chr4 (61-121)||(54992296-54992354)
[»] chr6 (3 HSPs)
chr6 (37-262)||(21785149-21785368)
chr6 (50-110)||(16834764-16834822)
chr6 (52-108)||(19993013-19993067)
[»] chr1 (9 HSPs)
chr1 (37-262)||(19075078-19075297)
chr1 (37-262)||(19122968-19123187)
chr1 (281-440)||(6788614-6788775)
chr1 (52-110)||(25845193-25845249)
chr1 (52-110)||(10136762-10136818)
chr1 (35-176)||(6786091-6786229)
chr1 (36-176)||(6789347-6789484)
chr1 (61-121)||(27712145-27712203)
chr1 (55-106)||(41862241-41862290)
[»] chr7 (4 HSPs)
chr7 (52-108)||(12802717-12802771)
chr7 (61-108)||(10391699-10391744)
chr7 (61-110)||(15975314-15975361)
chr7 (61-121)||(47994674-47994732)
[»] chr8 (2 HSPs)
chr8 (52-110)||(4541018-4541074)
chr8 (52-110)||(4241608-4241664)
[»] chr5 (6 HSPs)
chr5 (52-110)||(39519822-39519878)
chr5 (52-110)||(558206-558262)
chr5 (52-110)||(36425075-36425131)
chr5 (52-110)||(36940792-36940848)
chr5 (52-110)||(41998152-41998208)
chr5 (52-113)||(25688197-25688256)
[»] chr3 (7 HSPs)
chr3 (52-110)||(16452924-16452980)
chr3 (52-110)||(23664724-23664780)
chr3 (52-110)||(3674076-3674132)
chr3 (52-110)||(8884680-8884736)
chr3 (52-110)||(18468649-18468705)
chr3 (52-108)||(12970414-12970468)
chr3 (61-121)||(20094949-20095007)
[»] scaffold0014 (1 HSPs)
scaffold0014 (61-121)||(27247-27305)


Alignment Details
Target: chr2 (Bit Score: 313; Significance: 1e-176; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 30 - 455
Target Start/End: Complemental strand, 14916746 - 14916310
Alignment:
Q  30 tcattggaagcagccaaaccttcacattcacataggtgagtctatcaagagagtactcatgtagctatgtactccactccatatggggtatatgactcag 129  Q
    ||||||||||||||||||||||||||||||||||  |||||||||||||||  |||||||||||||| ||||||||||||||||||| ||||| |||||     
T  14916746 tcattggaagcagccaaaccttcacattcacataaatgagtctatcaagag--tactcatgtagctacgtactccactccatatgggatatataactcat 14916649  T
Q  130 taagaaatttaattcaacattttcacacactacgtgatatcttgctctaaatatacgattgagactttaaatttatttatccttagcatgatccac---a 226  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||   |    
T  14916648 taagaaatttaattcaacattttcacacactacgtgatatcttgctctaaatatatgattgagactttaaatttatttatctttagcatgatccacatga 14916549  T
Q  227 tctctatataagttgttattacccttt-aacctatttgggttaccctcatatgagaaaattattcttggcactagtctcattctttctgaggttttcaaa 325  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14916548 tctctatataagttgttattaccctttaaacctatttgggttaccctcatatgagaaaattattcttggcactagtctcattctttctgaggttttcaaa 14916449  T
Q  326 gccctctctgattaatcatttcgtcaaatgattagttaa------tctctctcttactaattcttttgtcaatggaccattcaaatttcttcatatctca 419  Q
    ||||||||||| |||||||||||||||||||||||||||      ||||||||||||||||||||| |||||||||||| ||||||||||||||||||||    
T  14916448 gccctctctgactaatcatttcgtcaaatgattagttaatctctctctctctcttactaattctttcgtcaatggaccagtcaaatttcttcatatctca 14916349  T
Q  420 tatg---atcatcttatttactttgtcctagctatgact 455  Q
    ||||   |||||||||||||||||||  ||| |||||||    
T  14916348 tatgatcatcatcttatttactttgtaatagttatgact 14916310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 52 - 110
Target Start/End: Original strand, 30652351 - 30652407
Alignment:
Q  52 cacattcacataggtgagtctatcaagagagtactcatgtagctatgtactccactcca 110  Q
    ||||||| |||||||||||||||||  ||||||||| |||||||| |||||||||||||    
T  30652351 cacattcgcataggtgagtctatca--agagtactcctgtagctaggtactccactcca 30652407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 52 - 110
Target Start/End: Complemental strand, 9184076 - 9184020
Alignment:
Q  52 cacattcacataggtgagtctatcaagagagtactcatgtagctatgtactccactcca 110  Q
    |||||||  ||||||||||||||||||||  ||||| |||||||| |||||||||||||    
T  9184076 cacattcgtataggtgagtctatcaagag--tactcctgtagctaggtactccactcca 9184020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 52 - 110
Target Start/End: Complemental strand, 17974009 - 17973953
Alignment:
Q  52 cacattcacataggtgagtctatcaagagagtactcatgtagctatgtactccactcca 110  Q
    |||||||  ||||||||||||||||||||  ||||| |||||||| |||||||||||||    
T  17974009 cacattcgtataggtgagtctatcaagag--tactcctgtagctaggtactccactcca 17973953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 52 - 110
Target Start/End: Complemental strand, 25483429 - 25483373
Alignment:
Q  52 cacattcacataggtgagtctatcaagagagtactcatgtagctatgtactccactcca 110  Q
    |||||||  |||||||||| ||||||||| |  ||||||||||||||||||||||||||    
T  25483429 cacattcgtataggtgagtatatcaagagtg--ctcatgtagctatgtactccactcca 25483373  T

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Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 52 - 110
Target Start/End: Complemental strand, 25491035 - 25490979
Alignment:
Q  52 cacattcacataggtgagtctatcaagagagtactcatgtagctatgtactccactcca 110  Q
    |||||||  |||||||||| ||||||||| |  ||||||||||||||||||||||||||    
T  25491035 cacattcgtataggtgagtatatcaagagtg--ctcatgtagctatgtactccactcca 25490979  T

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Target: chr4 (Bit Score: 86; Significance: 6e-41; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 261 - 442
Target Start/End: Original strand, 48515818 - 48516002
Alignment:
Q  261 ttgggttaccctcatatgagaaaattattcttggcactagtctcattctttctgagg-ttttcaaagccctctctgattaatcatttcgtcaaatgatta 359  Q
    ||||||||||||||||||||||||||| | ||| ||||||||||||||||||| ||| |||||||| |||||||||| ||||||||||||||||| ||||    
T  48515818 ttgggttaccctcatatgagaaaattactattgacactagtctcattctttctaaggtttttcaaaaccctctctgactaatcatttcgtcaaataatta 48515917  T
Q  360 gttaatc--tctctcttactaattcttttgtcaatggaccattcaaatttcttcatatctcatatgatcatcttatttactttgt 442  Q
    || ||||  |||||||||||||| |||| || || |||  | |||| |||||| | | ||||||||||||||||||||| |||||    
T  48515918 gtcaatctatctctcttactaatcctttggttaaaggattagtcaagtttctttagacctcatatgatcatcttatttaatttgt 48516002  T

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Target: chr4; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 35 - 253
Target Start/End: Original strand, 48515572 - 48515785
Alignment:
Q  35 ggaagcagccaaaccttcacattcacataggtgagtctatcaagagagtactcatgtagctatgtactccactccatatggggtatatgactcagtaaga 134  Q
    |||||| ||||||||| ||||||||||||| |||||||||||  |||||| | || |||||| |||||||||||||||||| |||||  ||||| |||||    
T  48515572 ggaagcggccaaacctccacattcacatagttgagtctatca--agagtattgatatagctacgtactccactccatatggagtatagaactcattaaga 48515669  T
Q  135 aatttaattcaacattttcacacactacgtgatatcttgctctaaata----tacgattgagactttaaatttatttatccttagcatgatccacatctc 230  Q
    || |||||||||| ||| ||  |||||| ||||||| || || ||| |    || || |||||| | |||       || ||||||||||||||||| ||    
T  48515670 aa-ttaattcaacctttccattcactacatgatatcatggtccaaaaaatactatgaatgagacataaaa------aattcttagcatgatccacatttc 48515762  T
Q  231 tatataagttgttattacccttt 253  Q
    |||||||||||||||||||||||    
T  48515763 tatataagttgttattacccttt 48515785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 61 - 113
Target Start/End: Original strand, 12875783 - 12875833
Alignment:
Q  61 ataggtgagtctatcaagagagtactcatgtagctatgtactccactccatat 113  Q
    ||||||||||||||||||||  ||| |||||||||||||||||||||||||||    
T  12875783 ataggtgagtctatcaagag--tacgcatgtagctatgtactccactccatat 12875833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 61 - 108
Target Start/End: Complemental strand, 8028980 - 8028935
Alignment:
Q  61 ataggtgagtctatcaagagagtactcatgtagctatgtactccactc 108  Q
    ||||||||||||||||||||  ||| ||||||||||||||||||||||    
T  8028980 ataggtgagtctatcaagag--tacccatgtagctatgtactccactc 8028935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 215 - 251
Target Start/End: Complemental strand, 12701303 - 12701267
Alignment:
Q  215 gcatgatccacatctctatataagttgttattaccct 251  Q
    ||||||| |||||||||||||||||||||||||||||    
T  12701303 gcatgattcacatctctatataagttgttattaccct 12701267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 36 - 80
Target Start/End: Complemental strand, 12701458 - 12701414
Alignment:
Q  36 gaagcagccaaaccttcacattcacataggtgagtctatcaagag 80  Q
    ||||| || |||||| |||||||||||||||||||||||||||||    
T  12701458 gaagcggcaaaacctccacattcacataggtgagtctatcaagag 12701414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 50 - 108
Target Start/End: Complemental strand, 33467722 - 33467666
Alignment:
Q  50 ttcacattcacataggtgagtctatcaagagagtactcatgtagctatgtactccactc 108  Q
    |||||||||  ||||||||||||||||  ||||||||| ||||||||||| ||||||||    
T  33467722 ttcacattcgtataggtgagtctatca--agagtactcctgtagctatgtgctccactc 33467666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 52 - 110
Target Start/End: Complemental strand, 37263222 - 37263166
Alignment:
Q  52 cacattcacataggtgagtctatcaagagagtactcatgtagctatgtactccactcca 110  Q
    |||||||  ||||||||||||||||||||  ||||| |||||||| |||||||||||||    
T  37263222 cacattcgtataggtgagtctatcaagag--tactcctgtagctaggtactccactcca 37263166  T

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Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 52 - 109
Target Start/End: Original strand, 19103412 - 19103467
Alignment:
Q  52 cacattcacataggtgagtctatcaagagagtactcatgtagctatgtactccactcc 109  Q
    |||||||  ||||||||||||||||||||  ||||| |||||||||||| ||||||||    
T  19103412 cacattcgtataggtgagtctatcaagag--tactcctgtagctatgtattccactcc 19103467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 79 - 108
Target Start/End: Original strand, 19907749 - 19907778
Alignment:
Q  79 agagtactcatgtagctatgtactccactc 108  Q
    ||||||||||||||||||||||||||||||    
T  19907749 agagtactcatgtagctatgtactccactc 19907778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 61 - 121
Target Start/End: Complemental strand, 8984678 - 8984620
Alignment:
Q  61 ataggtgagtctatcaagagagtactcatgtagctatgtactccactccatatggggtata 121  Q
    |||||||||||||||| || ||||||| |||||||||||||| ||||||||| || |||||    
T  8984678 ataggtgagtctatca-ga-agtactcctgtagctatgtacttcactccataaggagtata 8984620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 61 - 108
Target Start/End: Original strand, 13060910 - 13060955
Alignment:
Q  61 ataggtgagtctatcaagagagtactcatgtagctatgtactccactc 108  Q
    |||||||||| |||||||||  ||||| ||||||||||||||||||||    
T  13060910 ataggtgagtttatcaagag--tactcctgtagctatgtactccactc 13060955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 61 - 121
Target Start/End: Original strand, 13696212 - 13696270
Alignment:
Q  61 ataggtgagtctatcaagagagtactcatgtagctatgtactccactccatatggggtata 121  Q
    |||||||||||||||| || ||||||| |||||||||||||| ||||||||| || |||||    
T  13696212 ataggtgagtctatca-ga-agtactcctgtagctatgtacttcactccataaggagtata 13696270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 61 - 121
Target Start/End: Original strand, 13701332 - 13701390
Alignment:
Q  61 ataggtgagtctatcaagagagtactcatgtagctatgtactccactccatatggggtata 121  Q
    |||||||||||||||| || ||||||| |||||||||||||| ||||||||| || |||||    
T  13701332 ataggtgagtctatca-ga-agtactcctgtagctatgtacttcactccataaggagtata 13701390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 61 - 121
Target Start/End: Original strand, 13711825 - 13711883
Alignment:
Q  61 ataggtgagtctatcaagagagtactcatgtagctatgtactccactccatatggggtata 121  Q
    |||||||||||||||| || ||||||| |||||||||||||| ||||||||| || |||||    
T  13711825 ataggtgagtctatca-ga-agtactcctgtagctatgtacttcactccataaggagtata 13711883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 61 - 121
Target Start/End: Complemental strand, 21304226 - 21304168
Alignment:
Q  61 ataggtgagtctatcaagagagtactcatgtagctatgtactccactccatatggggtata 121  Q
    |||||||||||||||| || ||||||| |||||||||||||| ||||||||| || |||||    
T  21304226 ataggtgagtctatca-ga-agtactcctgtagctatgtacttcactccataaggagtata 21304168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 61 - 121
Target Start/End: Original strand, 36355015 - 36355073
Alignment:
Q  61 ataggtgagtctatcaagagagtactcatgtagctatgtactccactccatatggggtata 121  Q
    |||||||||||||||| || ||||||| |||||||||||||| ||||||||| || |||||    
T  36355015 ataggtgagtctatca-ga-agtactcctgtagctatgtacttcactccataaggagtata 36355073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 61 - 121
Target Start/End: Original strand, 39999943 - 40000001
Alignment:
Q  61 ataggtgagtctatcaagagagtactcatgtagctatgtactccactccatatggggtata 121  Q
    |||||||||||||||| || ||||||| |||||||||||||| ||||||||| || |||||    
T  39999943 ataggtgagtctatca-ga-agtactcctgtagctatgtacttcactccataaggagtata 40000001  T

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Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 61 - 121
Target Start/End: Original strand, 54992296 - 54992354
Alignment:
Q  61 ataggtgagtctatcaagagagtactcatgtagctatgtactccactccatatggggtata 121  Q
    |||||||||||||||| || ||||||| |||||||||||||| ||||||||| || |||||    
T  54992296 ataggtgagtctatca-ga-agtactcctgtagctatgtacttcactccataaggagtata 54992354  T

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Target: chr6 (Bit Score: 60; Significance: 2e-25; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 37 - 262
Target Start/End: Complemental strand, 21785368 - 21785149
Alignment:
Q  37 aagcagccaaaccttcacattcacataggtgagtctatcaagagagtactcatgtagctatgtactccactccatatggggtatatgactcagtaagaaa 136  Q
    |||| ||||||||| || ||||||||||||||||||||||||||  || | |||||||||  ||||||||||||||||| |||||| ||||| |||||||    
T  21785368 aagccgccaaacctccatattcacataggtgagtctatcaagag--tattgatgtagctacatactccactccatatggagtatataactcattaagaaa 21785271  T
Q  137 tttaattcaacattttcacacactacgtgatatcttgctctaaata--tacgattgagactttaaatttatttatccttagcatgatccacatctctata 234  Q
    ||| ||||||| ||||||  |||||| | ||||||||| | ||| |  || || |||||| | |||       || ||||||||| || |||||| ||||    
T  21785270 ttt-attcaaccttttcattcactacattatatcttgccccaaaaagctatgaatgagacataaaa------aattcttagcatgttctacatctttata 21785178  T
Q  235 taagttgttattacccttt-aacctattt 262  Q
    ||||||||||||||||||| |||||||||    
T  21785177 taagttgttattaccctttgaacctattt 21785149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 50 - 110
Target Start/End: Complemental strand, 16834822 - 16834764
Alignment:
Q  50 ttcacattcacataggtgagtctatcaagagagtactcatgtagctatgtactccactcca 110  Q
    ||||||||| |||||||||||||||||  || |||||| |||||||| |||||||||||||    
T  16834822 ttcacattcgcataggtgagtctatca--agggtactcctgtagctaggtactccactcca 16834764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 52 - 108
Target Start/End: Complemental strand, 19993067 - 19993013
Alignment:
Q  52 cacattcacataggtgagtctatcaagagagtactcatgtagctatgtactccactc 108  Q
    |||||||  |||||||||||| |||||||  || |||||||||||||||||||||||    
T  19993067 cacattcgtataggtgagtctttcaagag--taatcatgtagctatgtactccactc 19993013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 56; Significance: 5e-23; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 37 - 262
Target Start/End: Original strand, 19075078 - 19075297
Alignment:
Q  37 aagcagccaaaccttcacattcacataggtgagtctatcaagagagtactcatgtagctatgtactccactccatatggggtatatgactcagtaagaaa 136  Q
    |||| ||||||||| |||||||||||||||||||||||||  |||||| | ||||||||   ||||||||||||||||| |||||| ||||| |||||||    
T  19075078 aagcggccaaacctccacattcacataggtgagtctatca--agagtattgatgtagcttcatactccactccatatggagtatataactcattaagaaa 19075175  T
Q  137 tttaattcaacattttcacacactacgtgatatcttgctctaaata--tacgattgagactttaaatttatttatccttagcatgatccacatctctata 234  Q
    ||| || |||| ||||||  |||||| | ||||| | | | ||| |  || || |||||| | |||       || ||||||||| ||||||||||||||    
T  19075176 ttt-atccaaccttttcattcactacattatatcattccccaaaaagttatgaatgagacatcaaa------aattcttagcatgttccacatctctata 19075268  T
Q  235 taagttgttattacccttt-aacctattt 262  Q
    ||||||||||||||||||| |||||||||    
T  19075269 taagttgttattaccctttgaacctattt 19075297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 37 - 262
Target Start/End: Original strand, 19122968 - 19123187
Alignment:
Q  37 aagcagccaaaccttcacattcacataggtgagtctatcaagagagtactcatgtagctatgtactccactccatatggggtatatgactcagtaagaaa 136  Q
    |||| ||||||||| |||||||||||||||||||||||||  |||||| | ||||||||   ||||||||||||||||| |||||| ||||| |||||||    
T  19122968 aagcggccaaacctccacattcacataggtgagtctatca--agagtattgatgtagcttcatactccactccatatggagtatataactcattaagaaa 19123065  T
Q  137 tttaattcaacattttcacacactacgtgatatcttgctctaaata--tacgattgagactttaaatttatttatccttagcatgatccacatctctata 234  Q
    ||| || |||| ||||||  |||||| | ||||| | | | ||| |  || || |||||| | |||       || ||||||||| ||||||||||||||    
T  19123066 ttt-atccaaccttttcattcactacattatatcattccccaaaaagttatgaatgagacatcaaa------aattcttagcatgttccacatctctata 19123158  T
Q  235 taagttgttattacccttt-aacctattt 262  Q
    ||||||||||||||||||| |||||||||    
T  19123159 taagttgttattaccctttgaacctattt 19123187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 281 - 440
Target Start/End: Complemental strand, 6788775 - 6788614
Alignment:
Q  281 aaaattattcttggcactagtctcattctttctgaggttttcaaagccctctctgattaatcatttcgtcaaatgattagttaatc--tctctcttacta 378  Q
    ||||||||| ||  ||||||| ||||||||| |||||||| |||||||||||||   || |||||||||||||| || |   ||||  ||||||||||||    
T  6788775 aaaattattattcacactagtttcattctttttgaggtttacaaagccctctctatctattcatttcgtcaaataatcaaccaatctttctctcttacta 6788676  T
Q  379 attcttttgtcaatggaccattcaaatttcttcatatctcatatgatcatcttatttacttt 440  Q
    ||  ||| ||||| | |||| ||||||||||| | |  ||||||| ||||||||||||||||    
T  6788675 atcttttcgtcaaagtaccaatcaaatttctttaaacatcatatgttcatcttatttacttt 6788614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 52 - 110
Target Start/End: Original strand, 25845193 - 25845249
Alignment:
Q  52 cacattcacataggtgagtctatcaagagagtactcatgtagctatgtactccactcca 110  Q
    ||||||| |||||||||||||||||  ||||||||| |||||||| |||||||||||||    
T  25845193 cacattcgcataggtgagtctatca--agagtactcctgtagctaggtactccactcca 25845249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 52 - 110
Target Start/End: Original strand, 10136762 - 10136818
Alignment:
Q  52 cacattcacataggtgagtctatcaagagagtactcatgtagctatgtactccactcca 110  Q
    |||||||  ||||||||||||||||||||  ||||| |||||||| |||||||||||||    
T  10136762 cacattcgtataggtgagtctatcaagag--tactcctgtagctaggtactccactcca 10136818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 35 - 176
Target Start/End: Complemental strand, 6786229 - 6786091
Alignment:
Q  35 ggaagcagccaaaccttcacattcacataggtgagtctatcaagagagtactcatgtagctatgtactccactccatatggggtatatgactcagtaaga 134  Q
    |||||| ||||||||| |||||| ||| |||||||||||| |  |||||| | |||||||||  |||| |||| ||||||| ||| |  | ||| ||| |    
T  6786229 ggaagcggccaaacctccacatttacagaggtgagtctatta--agagtattgatgtagctacatactacactacatatggagtacaaaattcattaa-a 6786133  T
Q  135 aatttaattcaacattttcacacactacgtgatatcttgctc 176  Q
    || |||||||||||||| ||  |||||| ||||||| |||||    
T  6786132 aacttaattcaacatttccattcactacatgatatcatgctc 6786091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 36 - 176
Target Start/End: Complemental strand, 6789484 - 6789347
Alignment:
Q  36 gaagcagccaaaccttcacattcacataggtgagtctatcaagagagtactcatgtagctatgtactccactccatatggggtatatgactcagtaagaa 135  Q
    ||||| ||||||||| |||||||||| |||||||||||| |  |||||| | |||||||||  |||| |||| ||||||| ||| |  | ||| ||| ||    
T  6789484 gaagcggccaaacctccacattcacaaaggtgagtctatta--agagtattgatgtagctacatactacactacatatggagtacaaaattcattaa-aa 6789388  T
Q  136 atttaattcaacattttcacacactacgtgatatcttgctc 176  Q
    | |||||||||||||| ||  || ||| ||||||| |||||    
T  6789387 acttaattcaacatttccattcattacatgatatcatgctc 6789347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 61 - 121
Target Start/End: Original strand, 27712145 - 27712203
Alignment:
Q  61 ataggtgagtctatcaagagagtactcatgtagctatgtactccactccatatggggtata 121  Q
    |||||||||||||||| || ||||||| |||||||||||||| ||||||||| || |||||    
T  27712145 ataggtgagtctatca-ga-agtactcctgtagctatgtacttcactccataaggagtata 27712203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 55 - 106
Target Start/End: Complemental strand, 41862290 - 41862241
Alignment:
Q  55 attcacataggtgagtctatcaagagagtactcatgtagctatgtactccac 106  Q
    |||||||||||||||| |||||  ||||||||||||||| || |||||||||    
T  41862290 attcacataggtgagtttatca--agagtactcatgtagttaggtactccac 41862241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 52 - 108
Target Start/End: Original strand, 12802717 - 12802771
Alignment:
Q  52 cacattcacataggtgagtctatcaagagagtactcatgtagctatgtactccactc 108  Q
    |||||||  ||||||||||||||||||||  ||||||||||||||||||||||||||    
T  12802717 cacattcgtataggtgagtctatcaagag--tactcatgtagctatgtactccactc 12802771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 61 - 108
Target Start/End: Complemental strand, 10391744 - 10391699
Alignment:
Q  61 ataggtgagtctatcaagagagtactcatgtagctatgtactccactc 108  Q
    ||||||||||||||||||||  ||||| ||||||||||||||||||||    
T  10391744 ataggtgagtctatcaagag--tactcctgtagctatgtactccactc 10391699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 61 - 110
Target Start/End: Original strand, 15975314 - 15975361
Alignment:
Q  61 ataggtgagtctatcaagagagtactcatgtagctatgtactccactcca 110  Q
    ||||| ||||||||||||||  |||||||||||||||||||| |||||||    
T  15975314 ataggcgagtctatcaagag--tactcatgtagctatgtacttcactcca 15975361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 61 - 121
Target Start/End: Original strand, 47994674 - 47994732
Alignment:
Q  61 ataggtgagtctatcaagagagtactcatgtagctatgtactccactccatatggggtata 121  Q
    |||||||||||||||| || ||||||| |||||||||||||| ||||||||| || |||||    
T  47994674 ataggtgagtctatca-ga-agtactcctgtagctatgtacttcactccataaggagtata 47994732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 52 - 110
Target Start/End: Complemental strand, 4541074 - 4541018
Alignment:
Q  52 cacattcacataggtgagtctatcaagagagtactcatgtagctatgtactccactcca 110  Q
    |||||||||| ||||||||||||||  ||||||||| |||||||| |||||||||||||    
T  4541074 cacattcacaaaggtgagtctatca--agagtactcttgtagctaggtactccactcca 4541018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 52 - 110
Target Start/End: Complemental strand, 4241664 - 4241608
Alignment:
Q  52 cacattcacataggtgagtctatcaagagagtactcatgtagctatgtactccactcca 110  Q
    |||||||  ||||||||||||||||||||  ||||| |||||||| |||||||||||||    
T  4241664 cacattcgtataggtgagtctatcaagag--tactcctgtagctaggtactccactcca 4241608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 52 - 110
Target Start/End: Original strand, 39519822 - 39519878
Alignment:
Q  52 cacattcacataggtgagtctatcaagagagtactcatgtagctatgtactccactcca 110  Q
    ||||||| |||||||||||||||||  ||||||||| |||||||| |||||||||||||    
T  39519822 cacattcgcataggtgagtctatca--agagtactcctgtagctaggtactccactcca 39519878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 52 - 110
Target Start/End: Original strand, 558206 - 558262
Alignment:
Q  52 cacattcacataggtgagtctatcaagagagtactcatgtagctatgtactccactcca 110  Q
    |||||||  ||||||||||||||||||||  ||||| |||||||| |||||||||||||    
T  558206 cacattcgtataggtgagtctatcaagag--tactcctgtagctaggtactccactcca 558262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 52 - 110
Target Start/End: Original strand, 36425075 - 36425131
Alignment:
Q  52 cacattcacataggtgagtctatcaagagagtactcatgtagctatgtactccactcca 110  Q
    |||||||  ||||||||||||||||||||  ||||| |||||||| |||||||||||||    
T  36425075 cacattcgtataggtgagtctatcaagag--tactcctgtagctaggtactccactcca 36425131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 52 - 110
Target Start/End: Complemental strand, 36940848 - 36940792
Alignment:
Q  52 cacattcacataggtgagtctatcaagagagtactcatgtagctatgtactccactcca 110  Q
    |||||||  ||||||||||||||||||||  ||||| |||||||| |||||||||||||    
T  36940848 cacattcgtataggtgagtctatcaagag--tactcctgtagctaggtactccactcca 36940792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 52 - 110
Target Start/End: Original strand, 41998152 - 41998208
Alignment:
Q  52 cacattcacataggtgagtctatcaagagagtactcatgtagctatgtactccactcca 110  Q
    |||||||  ||||||||||||||||||||  ||||| |||||||| |||||||||||||    
T  41998152 cacattcgtataggtgagtctatcaagag--tactcctgtagctaggtactccactcca 41998208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 52 - 113
Target Start/End: Complemental strand, 25688256 - 25688197
Alignment:
Q  52 cacattcacataggtgagtctatcaagagagtactcatgtagctatgtactccactccatat 113  Q
    |||||||| ||| |||||||||| |||||  ||||||| ||||||||||||||||| |||||    
T  25688256 cacattcatataagtgagtctattaagag--tactcatttagctatgtactccacttcatat 25688197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 52 - 110
Target Start/End: Complemental strand, 16452980 - 16452924
Alignment:
Q  52 cacattcacataggtgagtctatcaagagagtactcatgtagctatgtactccactcca 110  Q
    |||||||||| ||||||||||||||  ||||||||| |||||||| |||||||||||||    
T  16452980 cacattcacaaaggtgagtctatca--agagtactcttgtagctaggtactccactcca 16452924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 52 - 110
Target Start/End: Complemental strand, 23664780 - 23664724
Alignment:
Q  52 cacattcacataggtgagtctatcaagagagtactcatgtagctatgtactccactcca 110  Q
    ||||||| |||||||||||||||||  ||||||||| |||||||| |||||||||||||    
T  23664780 cacattcgcataggtgagtctatca--agagtactcctgtagctaggtactccactcca 23664724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 52 - 110
Target Start/End: Original strand, 3674076 - 3674132
Alignment:
Q  52 cacattcacataggtgagtctatcaagagagtactcatgtagctatgtactccactcca 110  Q
    |||||||  ||||||||||||||||||||  ||||| |||||||| |||||||||||||    
T  3674076 cacattcgtataggtgagtctatcaagag--tactcctgtagctaggtactccactcca 3674132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 52 - 110
Target Start/End: Original strand, 8884680 - 8884736
Alignment:
Q  52 cacattcacataggtgagtctatcaagagagtactcatgtagctatgtactccactcca 110  Q
    |||||||  ||||||||||||||||||||  ||||| |||||||| |||||||||||||    
T  8884680 cacattcgtataggtgagtctatcaagag--tactcctgtagctaggtactccactcca 8884736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 52 - 110
Target Start/End: Original strand, 18468649 - 18468705
Alignment:
Q  52 cacattcacataggtgagtctatcaagagagtactcatgtagctatgtactccactcca 110  Q
    |||||||  ||||||||||||||||||||  ||||| |||||||| |||||||||||||    
T  18468649 cacattcgtataggtgagtctatcaagag--tactcctgtagctaggtactccactcca 18468705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 52 - 108
Target Start/End: Complemental strand, 12970468 - 12970414
Alignment:
Q  52 cacattcacataggtgagtctatcaagagagtactcatgtagctatgtactccactc 108  Q
    |||||||  ||||||||||| ||||| ||  ||||||||||||||||||||||||||    
T  12970468 cacattcgtataggtgagtccatcaatag--tactcatgtagctatgtactccactc 12970414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 61 - 121
Target Start/End: Complemental strand, 20095007 - 20094949
Alignment:
Q  61 ataggtgagtctatcaagagagtactcatgtagctatgtactccactccatatggggtata 121  Q
    |||||||||||||||| || ||||||| |||||||||||||| ||||||||| || |||||    
T  20095007 ataggtgagtctatca-ga-agtactcctgtagctatgtacttcactccataaggagtata 20094949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 61 - 121
Target Start/End: Original strand, 27247 - 27305
Alignment:
Q  61 ataggtgagtctatcaagagagtactcatgtagctatgtactccactccatatggggtata 121  Q
    |||||||||||||||| || ||||||| |||||||||||||| ||||||||| || |||||    
T  27247 ataggtgagtctatca-ga-agtactcctgtagctatgtacttcactccataaggagtata 27305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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