View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3714_high_4 (Length: 244)

Name: NF3714_high_4
Description: NF3714
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3714_high_4
NF3714_high_4
[»] chr3 (24 HSPs)
chr3 (14-232)||(51771459-51771675)
chr3 (14-65)||(16479632-16479683)
chr3 (15-66)||(42477960-42478011)
chr3 (15-65)||(28539761-28539811)
chr3 (14-79)||(47141620-47141685)
chr3 (14-63)||(33939238-33939287)
chr3 (14-67)||(37302544-37302597)
chr3 (14-67)||(38671616-38671669)
chr3 (14-65)||(28920069-28920121)
chr3 (14-65)||(44813134-44813185)
chr3 (14-68)||(6178445-6178499)
chr3 (14-64)||(41308926-41308976)
chr3 (17-66)||(51137058-51137108)
chr3 (17-69)||(1295328-1295380)
chr3 (14-66)||(4494256-4494309)
chr3 (14-67)||(26014810-26014863)
chr3 (14-66)||(29573375-29573428)
chr3 (14-74)||(51873384-51873445)
chr3 (14-65)||(349432-349484)
chr3 (14-65)||(26550237-26550289)
chr3 (14-65)||(27168701-27168753)
chr3 (17-65)||(36671037-36671085)
chr3 (14-65)||(47849672-47849723)
chr3 (14-69)||(52100257-52100312)
[»] chr1 (18 HSPs)
chr1 (14-69)||(46281432-46281488)
chr1 (14-72)||(14442253-14442311)
chr1 (14-71)||(5437283-5437340)
chr1 (14-65)||(1689391-1689443)
chr1 (14-76)||(49446817-49446879)
chr1 (14-68)||(37685328-37685382)
chr1 (14-68)||(37700136-37700190)
chr1 (14-66)||(3919299-3919351)
chr1 (38-67)||(13355102-13355131)
chr1 (14-70)||(15470076-15470133)
chr1 (15-67)||(45863741-45863794)
chr1 (14-65)||(11038262-11038313)
chr1 (14-65)||(21433420-21433472)
chr1 (14-65)||(22674712-22674763)
chr1 (14-62)||(32831187-32831234)
chr1 (14-66)||(37275053-37275105)
chr1 (14-70)||(37619539-37619595)
chr1 (14-65)||(52437494-52437546)
[»] scaffold0056 (1 HSPs)
scaffold0056 (14-65)||(76639-76690)
[»] chr6 (11 HSPs)
chr6 (14-66)||(31869066-31869118)
chr6 (14-65)||(14817932-14817983)
chr6 (14-72)||(33651013-33651072)
chr6 (37-74)||(29376758-29376795)
chr6 (14-65)||(17182099-17182151)
chr6 (24-67)||(276989-277032)
chr6 (14-69)||(25811858-25811913)
chr6 (14-67)||(31077791-31077844)
chr6 (14-67)||(34047385-34047438)
chr6 (14-62)||(34570614-34570663)
chr6 (14-66)||(8098615-8098667)
[»] chr4 (23 HSPs)
chr4 (17-65)||(46212970-46213018)
chr4 (14-65)||(55609185-55609236)
chr4 (14-65)||(42815404-42815456)
chr4 (14-65)||(47288082-47288134)
chr4 (14-65)||(10250535-10250586)
chr4 (14-65)||(27051106-27051157)
chr4 (39-74)||(36871202-36871237)
chr4 (14-65)||(44539736-44539787)
chr4 (15-65)||(45779312-45779362)
chr4 (14-65)||(50890093-50890144)
chr4 (14-64)||(336827-336877)
chr4 (15-65)||(38134353-38134403)
chr4 (14-67)||(5622456-5622509)
chr4 (19-64)||(39731911-39731956)
chr4 (14-74)||(54251470-54251530)
chr4 (14-65)||(9472533-9472584)
chr4 (14-65)||(20056396-20056447)
chr4 (17-65)||(26724992-26725040)
chr4 (14-66)||(37997255-37997307)
chr4 (14-65)||(44170639-44170690)
chr4 (14-65)||(51225544-51225596)
chr4 (14-65)||(53654769-53654821)
chr4 (14-65)||(53662448-53662499)
[»] chr2 (16 HSPs)
chr2 (14-73)||(34134790-34134850)
chr2 (14-65)||(43487379-43487430)
chr2 (14-64)||(4384056-4384106)
chr2 (14-67)||(12784418-12784472)
chr2 (15-66)||(38021355-38021406)
chr2 (17-67)||(8293227-8293278)
chr2 (14-68)||(40210087-40210142)
chr2 (14-67)||(6328665-6328718)
chr2 (14-67)||(33559637-33559690)
chr2 (17-65)||(1907786-1907835)
chr2 (17-62)||(13766332-13766377)
chr2 (14-66)||(18876941-18876994)
chr2 (21-65)||(40358138-40358183)
chr2 (14-62)||(9194244-9194292)
chr2 (14-66)||(22888841-22888893)
chr2 (14-65)||(36517196-36517248)
[»] chr5 (20 HSPs)
chr5 (17-76)||(5721840-5721899)
chr5 (14-66)||(38293378-38293431)
chr5 (14-69)||(6538866-6538921)
chr5 (14-65)||(6940169-6940221)
chr5 (14-65)||(11954431-11954483)
chr5 (14-65)||(26686881-26686933)
chr5 (14-65)||(26956612-26956664)
chr5 (14-65)||(1079972-1080023)
chr5 (15-69)||(5382537-5382592)
chr5 (14-68)||(39054584-39054638)
chr5 (21-70)||(40039285-40039335)
chr5 (37-70)||(14070658-14070691)
chr5 (21-69)||(40829410-40829459)
chr5 (37-65)||(582910-582938)
chr5 (14-65)||(18695318-18695370)
chr5 (14-65)||(19844328-19844380)
chr5 (14-65)||(20985549-20985600)
chr5 (14-62)||(32639046-32639094)
chr5 (17-69)||(39807737-39807789)
chr5 (14-65)||(41192587-41192638)
[»] scaffold0178 (1 HSPs)
scaffold0178 (14-67)||(9774-9828)
[»] chr7 (12 HSPs)
chr7 (13-70)||(23844960-23845017)
chr7 (14-65)||(46829479-46829531)
chr7 (14-64)||(17039158-17039208)
chr7 (14-66)||(29723946-29724000)
chr7 (15-70)||(41189564-41189619)
chr7 (13-62)||(10578071-10578120)
chr7 (17-65)||(15564911-15564960)
chr7 (14-65)||(30061281-30061333)
chr7 (14-62)||(32529874-32529922)
chr7 (37-73)||(33050175-33050211)
chr7 (17-68)||(42598230-42598282)
chr7 (14-66)||(44189330-44189382)
[»] chr8 (11 HSPs)
chr8 (14-65)||(43715875-43715926)
chr8 (14-76)||(10902694-10902756)
chr8 (14-67)||(42786679-42786733)
chr8 (17-65)||(2621785-2621834)
chr8 (14-67)||(7814612-7814665)
chr8 (17-61)||(34578229-34578274)
chr8 (14-65)||(6440081-6440133)
chr8 (14-65)||(10644821-10644873)
chr8 (17-65)||(10692439-10692487)
chr8 (14-66)||(27325757-27325809)
chr8 (14-65)||(38675603-38675655)
[»] scaffold0687 (1 HSPs)
scaffold0687 (14-67)||(7058-7111)
[»] scaffold0018 (1 HSPs)
scaffold0018 (14-65)||(36002-36053)


Alignment Details
Target: chr3 (Bit Score: 137; Significance: 1e-71; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 14 - 232
Target Start/End: Original strand, 51771459 - 51771675
Alignment:
Q  14 gagaaagttgtcacaaaaattatacaaaatagttgtaaaaatatcatttctcatttaaaaaatcaatgtcaaagttaattaattggaaccaaagaatggc 113  Q
    |||||| || ||| |||||||||||||||| |||||| ||||||||||||||||| |||| ||||||||||||||||||||||| ||||||||||| |||    
T  51771459 gagaaaattatcaaaaaaattatacaaaatggttgtacaaatatcatttctcattgaaaa-atcaatgtcaaagttaattaattcgaaccaaagaaaggc 51771557  T
Q  114 aaaatgtgaaatcacatttaaatgtgnnnnnnnnnnnaataaatgtaacttagtttttaaatgtgccctttcttagttaatttgtctataaatttactaa 213  Q
    ||||||||||||||||||||||||||           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  51771558 aaaatgtgaaatcacatttaaatgtg-tttttttttaaataaatgtaacttagtttttaaatgtgccctttcttagttaatttgtctataaagttactaa 51771656  T
Q  214 tgaaagaaataatttgatg 232  Q
    |||||||||||||||||||    
T  51771657 tgaaagaaataatttgatg 51771675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 14 - 65
Target Start/End: Complemental strand, 16479683 - 16479632
Alignment:
Q  14 gagaaagttgtcacaaaaattatacaaaatagttgtaaaaatatcatttctc 65  Q
    |||||||||||||||||| || |||||||| |||||| ||||||||||||||    
T  16479683 gagaaagttgtcacaaaagttgtacaaaatggttgtacaaatatcatttctc 16479632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 15 - 66
Target Start/End: Complemental strand, 42478011 - 42477960
Alignment:
Q  15 agaaagttgtcacaaaaattatacaaaatagttgtaaaaatatcatttctca 66  Q
    ||||||||||||||||||||||| |||||| ||||  |||||||||||||||    
T  42478011 agaaagttgtcacaaaaattataaaaaataattgttcaaatatcatttctca 42477960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 15 - 65
Target Start/End: Original strand, 28539761 - 28539811
Alignment:
Q  15 agaaagttgtcacaaaaattatacaaaatagttgtaaaaatatcatttctc 65  Q
    ||||| ||||||||||||||||| |||||||||||  ||||||||||||||    
T  28539761 agaaaattgtcacaaaaattataaaaaatagttgttcaaatatcatttctc 28539811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 14 - 79
Target Start/End: Original strand, 47141620 - 47141685
Alignment:
Q  14 gagaaagttgtcacaaaaattatac-aaaatagttgtaaaaatatcatttctcatttaaaaaatcaa 79  Q
    ||||||||||| ||||||||||||| ||||| |||||| ||||||||||||||| || |||||||||    
T  47141620 gagaaagttgt-acaaaaattataccaaaatggttgtacaaatatcatttctcaatttaaaaatcaa 47141685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 14 - 63
Target Start/End: Complemental strand, 33939287 - 33939238
Alignment:
Q  14 gagaaagttgtcacaaaaattatacaaaatagttgtaaaaatatcatttc 63  Q
    |||||||||||||||||||||||| ||||| |||||  ||||||||||||    
T  33939287 gagaaagttgtcacaaaaattataaaaaatggttgttcaaatatcatttc 33939238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 14 - 67
Target Start/End: Complemental strand, 37302597 - 37302544
Alignment:
Q  14 gagaaagttgtcacaaaaattatacaaaatagttgtaaaaatatcatttctcat 67  Q
    |||||||||||||||||| || || ||||| ||||| |||||||||||||||||    
T  37302597 gagaaagttgtcacaaaagttgtaaaaaatggttgttaaaatatcatttctcat 37302544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 14 - 67
Target Start/End: Complemental strand, 38671669 - 38671616
Alignment:
Q  14 gagaaagttgtcacaaaaattatacaaaatagttgtaaaaatatcatttctcat 67  Q
    |||||| ||||||||||||||||| ||||| |||||  ||||||||||||||||    
T  38671669 gagaaaattgtcacaaaaattataaaaaatggttgttcaaatatcatttctcat 38671616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 14 - 65
Target Start/End: Original strand, 28920069 - 28920121
Alignment:
Q  14 gagaaagttgtcacaaaaatta-tacaaaatagttgtaaaaatatcatttctc 65  Q
    |||||||||||||||||||||| ||  ||||||||||| ||||||||||||||    
T  28920069 gagaaagttgtcacaaaaattattatcaaatagttgtacaaatatcatttctc 28920121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 14 - 65
Target Start/End: Complemental strand, 44813185 - 44813134
Alignment:
Q  14 gagaaagttgtcacaaaaattatacaaaatagttgtaaaaatatcatttctc 65  Q
    ||||||| ||||||||||||| || |||||||||||  ||||||||||||||    
T  44813185 gagaaagctgtcacaaaaattgtaaaaaatagttgtttaaatatcatttctc 44813134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 68
Target Start/End: Original strand, 6178445 - 6178499
Alignment:
Q  14 gagaaagttgtcacaaaaattatacaaaatagttgtaaaaatatcatttctcatt 68  Q
    |||||| ||||||||||| || |  |||||||||||| |||||||||||||||||    
T  6178445 gagaaaattgtcacaaaagttgtcaaaaatagttgtacaaatatcatttctcatt 6178499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 64
Target Start/End: Complemental strand, 41308976 - 41308926
Alignment:
Q  14 gagaaagttgtcacaaaaattatacaaaatagttgtaaaaatatcatttct 64  Q
    |||||||||||||||||| ||||| ||||| |||||  |||||||||||||    
T  41308976 gagaaagttgtcacaaaagttataaaaaatggttgttcaaatatcatttct 41308926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 66
Target Start/End: Original strand, 51137058 - 51137108
Alignment:
Q  17 aaagttgtcacaaaaattat-acaaaatagttgtaaaaatatcatttctca 66  Q
    ||||||||||||||| |||| | |||||||||||| |||||||||||||||    
T  51137058 aaagttgtcacaaaagttattaaaaaatagttgtacaaatatcatttctca 51137108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 69
Target Start/End: Complemental strand, 1295380 - 1295328
Alignment:
Q  17 aaagttgtcacaaaaattat-acaaaatagttgtaaaaatatcatttctcattt 69  Q
    ||||||||| ||||| |||| |||||||||||||| ||||||||||||||||||    
T  1295380 aaagttgtc-caaaagttatcacaaaatagttgtacaaatatcatttctcattt 1295328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 14 - 66
Target Start/End: Original strand, 4494256 - 4494309
Alignment:
Q  14 gagaaagttgtcacaaaaattat-acaaaatagttgtaaaaatatcatttctca 66  Q
    ||||||||||||||||||||||| | ||||||||| |  |||||||||||||||    
T  4494256 gagaaagttgtcacaaaaattatcaaaaaatagttattcaaatatcatttctca 4494309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 14 - 67
Target Start/End: Complemental strand, 26014863 - 26014810
Alignment:
Q  14 gagaaagttgtcacaaaaattatacaaaatagttgtaaaaatatcatttctcat 67  Q
    |||||||||||||||||| || || ||||| |||||  ||||||||||||||||    
T  26014863 gagaaagttgtcacaaaagttgtaaaaaatggttgttcaaatatcatttctcat 26014810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 14 - 66
Target Start/End: Original strand, 29573375 - 29573428
Alignment:
Q  14 gagaaagttgtcacaaaaattat-acaaaatagttgtaaaaatatcatttctca 66  Q
    |||||||||||||||||| || | ||||||| |||||| |||||||||||||||    
T  29573375 gagaaagttgtcacaaaagttgttacaaaatggttgtacaaatatcatttctca 29573428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 14 - 74
Target Start/End: Complemental strand, 51873445 - 51873384
Alignment:
Q  14 gagaaagttgtcacaaaaattat-acaaaatagttgtaaaaatatcatttctcatttaaaaa 74  Q
    |||||| |||||| ||||||| | |||||||||||||  ||||||||||||||| |||||||    
T  51873445 gagaaaattgtcataaaaattgtcacaaaatagttgttcaaatatcatttctcaattaaaaa 51873384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 65
Target Start/End: Original strand, 349432 - 349484
Alignment:
Q  14 gagaaagttgtcacaaaaatta-tacaaaatagttgtaaaaatatcatttctc 65  Q
    |||||||||| ||||||||||| || ||||| |||||| ||||||||||||||    
T  349432 gagaaagttgccacaaaaattattataaaatggttgtacaaatatcatttctc 349484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 65
Target Start/End: Complemental strand, 26550289 - 26550237
Alignment:
Q  14 gagaaagttgtcacaaaaatta-tacaaaatagttgtaaaaatatcatttctc 65  Q
    |||||||||||||||||||||| || ||||| |||||  ||||||||||||||    
T  26550289 gagaaagttgtcacaaaaattattaaaaaatggttgtgcaaatatcatttctc 26550237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 65
Target Start/End: Original strand, 27168701 - 27168753
Alignment:
Q  14 gagaaagttgtcacaaaaatta-tacaaaatagttgtaaaaatatcatttctc 65  Q
    |||||||||||||||||||||| || ||||| |||||  ||||||||||||||    
T  27168701 gagaaagttgtcacaaaaattattaaaaaatggttgttcaaatatcatttctc 27168753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 65
Target Start/End: Original strand, 36671037 - 36671085
Alignment:
Q  17 aaagttgtcacaaaaattatacaaaatagttgtaaaaatatcatttctc 65  Q
    |||||||||||||||||| || ||||| |||||  ||||||||||||||    
T  36671037 aaagttgtcacaaaaattgtaaaaaatggttgttcaaatatcatttctc 36671085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 65
Target Start/End: Complemental strand, 47849723 - 47849672
Alignment:
Q  14 gagaaagttgtcacaaaaattat-acaaaatagttgtaaaaatatcatttctc 65  Q
    ||||||||||||| ||||||||| ||||||| |||||| ||||||||||||||    
T  47849723 gagaaagttgtca-aaaaattatcacaaaatggttgtacaaatatcatttctc 47849672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 69
Target Start/End: Complemental strand, 52100312 - 52100257
Alignment:
Q  14 gagaaagttgtcacaaaaattat-acaaaatagttgtaaaaatatcatttctcattt 69  Q
    ||||||||||| ||||||||||| | ||||| |||||| ||||||||||||||||||    
T  52100312 gagaaagttgt-acaaaaattattaaaaaatggttgtacaaatatcatttctcattt 52100257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 9e-17; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 14 - 69
Target Start/End: Complemental strand, 46281488 - 46281432
Alignment:
Q  14 gagaaagttgtcacaaaaattat-acaaaatagttgtaaaaatatcatttctcattt 69  Q
    ||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||    
T  46281488 gagaaagttgtcacaaaaattattacaaaatagttgtacaaatatcatttctcattt 46281432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 14 - 72
Target Start/End: Complemental strand, 14442311 - 14442253
Alignment:
Q  14 gagaaagttgtcacaaaaattatacaaaatagttgtaaaaatatcatttctcatttaaa 72  Q
    |||||||||||||||||| |   |||||||||||||| ||||||||| |||||||||||    
T  14442311 gagaaagttgtcacaaaattgtcacaaaatagttgtacaaatatcatctctcatttaaa 14442253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 14 - 71
Target Start/End: Complemental strand, 5437340 - 5437283
Alignment:
Q  14 gagaaagttgtcacaaaaattatacaaaatagttgtaaaaatatcatttctcatttaa 71  Q
    |||||||||||| |||||| | | ||||||||||||| ||| ||||||||||||||||    
T  5437340 gagaaagttgtcccaaaaaatgtccaaaatagttgtataaacatcatttctcatttaa 5437283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 14 - 65
Target Start/End: Complemental strand, 1689443 - 1689391
Alignment:
Q  14 gagaaagttgtcacaaaaattat-acaaaatagttgtaaaaatatcatttctc 65  Q
    ||||||||||||||||||||| | | |||||||||||| ||||||||||||||    
T  1689443 gagaaagttgtcacaaaaattgttataaaatagttgtacaaatatcatttctc 1689391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 14 - 76
Target Start/End: Original strand, 49446817 - 49446879
Alignment:
Q  14 gagaaagttgtcacaaaaatt-atacaaaatagttgtaaaaatatcatttctcatttaaaaaat 76  Q
    |||||||||||||||||||||  |||||||| ||| || |||||||||||||| ||||||||||    
T  49446817 gagaaagttgtcacaaaaattggtacaaaatggttttacaaatatcatttctc-tttaaaaaat 49446879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 68
Target Start/End: Complemental strand, 37685382 - 37685328
Alignment:
Q  14 gagaaagttgtcacaaaaattatacaaaatagttgtaaaaatatcatttctcatt 68  Q
    |||||||||||||||||| || || ||||| |||||  |||||||||||||||||    
T  37685382 gagaaagttgtcacaaaagttgtaaaaaatggttgttcaaatatcatttctcatt 37685328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 68
Target Start/End: Original strand, 37700136 - 37700190
Alignment:
Q  14 gagaaagttgtcacaaaaattatacaaaatagttgtaaaaatatcatttctcatt 68  Q
    |||||||||||||||||| || || ||||| |||||  |||||||||||||||||    
T  37700136 gagaaagttgtcacaaaagttgtaaaaaatggttgttcaaatatcatttctcatt 37700190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 14 - 66
Target Start/End: Complemental strand, 3919351 - 3919299
Alignment:
Q  14 gagaaagttgtcacaaaaattata-caaaatagttgtaaaaatatcatttctca 66  Q
    |||||||||||| ||||||||||| |||||| |||||| |||||||||||||||    
T  3919351 gagaaagttgtc-caaaaattataacaaaatggttgtacaaatatcatttctca 3919299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 38 - 67
Target Start/End: Original strand, 13355102 - 13355131
Alignment:
Q  38 caaaatagttgtaaaaatatcatttctcat 67  Q
    ||||||||||||||||||||||||||||||    
T  13355102 caaaatagttgtaaaaatatcatttctcat 13355131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 14 - 70
Target Start/End: Original strand, 15470076 - 15470133
Alignment:
Q  14 gagaaagttgtcacaaaaattatacaaaa-tagttgtaaaaatatcatttctcattta 70  Q
    ||||||||||||| |||| ||||| |||| | ||||| ||||||||||||||||||||    
T  15470076 gagaaagttgtcaaaaaagttataaaaaaatggttgttaaaatatcatttctcattta 15470133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 15 - 67
Target Start/End: Original strand, 45863741 - 45863794
Alignment:
Q  15 agaaagttgtcacaaaaattat-acaaaatagttgtaaaaatatcatttctcat 67  Q
    ||||| |||||||||||||||| | |||||| ||||| ||||||||||||||||    
T  45863741 agaaaattgtcacaaaaattatcaaaaaataattgtacaaatatcatttctcat 45863794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 65
Target Start/End: Complemental strand, 11038313 - 11038262
Alignment:
Q  14 gagaaagttgtcacaaaaattatac-aaaatagttgtaaaaatatcatttctc 65  Q
    ||||||||||| ||||||||||||| ||||| |||||| ||||||||||||||    
T  11038313 gagaaagttgt-acaaaaattataccaaaatggttgtataaatatcatttctc 11038262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 65
Target Start/End: Original strand, 21433420 - 21433472
Alignment:
Q  14 gagaaagttgtcacaaaaattat-acaaaatagttgtaaaaatatcatttctc 65  Q
    |||||||||||||||||| || | ||||||| |||||| ||||||||||||||    
T  21433420 gagaaagttgtcacaaaagttgttacaaaatggttgtacaaatatcatttctc 21433472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 65
Target Start/End: Complemental strand, 22674763 - 22674712
Alignment:
Q  14 gagaaagttgtcacaaaaattatacaaaa-tagttgtaaaaatatcatttctc 65  Q
    ||||||||||| ||||||||| ||||||| |||||||| ||||||||||||||    
T  22674763 gagaaagttgt-acaaaaattgtacaaaaatagttgtacaaatatcatttctc 22674712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 62
Target Start/End: Original strand, 32831187 - 32831234
Alignment:
Q  14 gagaaagttgtcacaaaaattatacaaaatagttgtaaaaatatcattt 62  Q
    ||||||||| |||||||||||||| ||||| |||||| |||||||||||    
T  32831187 gagaaagtt-tcacaaaaattatagaaaatggttgtataaatatcattt 32831234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 66
Target Start/End: Original strand, 37275053 - 37275105
Alignment:
Q  14 gagaaagttgtcacaaaaattatacaaaatagttgtaaaaatatcatttctca 66  Q
    ||||||||| |||||||| ||||| ||||| |||||  |||||||||||||||    
T  37275053 gagaaagttatcacaaaagttataaaaaatggttgttcaaatatcatttctca 37275105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 70
Target Start/End: Complemental strand, 37619595 - 37619539
Alignment:
Q  14 gagaaagttgtcacaaaaattatacaaaatagttgtaaaaatatcatttctcattta 70  Q
    |||||||||||||||||| ||||  ||||| |||||  |||||||||||||| ||||    
T  37619595 gagaaagttgtcacaaaagttatcaaaaatggttgtccaaatatcatttctctttta 37619539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 65
Target Start/End: Complemental strand, 52437546 - 52437494
Alignment:
Q  14 gagaaagttgtcacaaaaatta-tacaaaatagttgtaaaaatatcatttctc 65  Q
    |||||||||||||||||||||| || ||||| |||||| | ||||||||||||    
T  52437546 gagaaagttgtcacaaaaattattaaaaaatggttgtatatatatcatttctc 52437494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0056 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0056
Description:

Target: scaffold0056; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 14 - 65
Target Start/End: Original strand, 76639 - 76690
Alignment:
Q  14 gagaaagttgtcacaaaaattatacaaaatagttgtaaaaatatcatttctc 65  Q
    |||||||||||||||||||||||| |||||||||||  ||||||||||||||    
T  76639 gagaaagttgtcacaaaaattataaaaaatagttgttcaaatatcatttctc 76690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.000000000005; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 14 - 66
Target Start/End: Complemental strand, 31869118 - 31869066
Alignment:
Q  14 gagaaagttgtcacaaaaattatacaaaatagttgtaaaaatatcatttctca 66  Q
    |||||||||||||||||| || ||||||||||||||| ||||||| |||||||    
T  31869118 gagaaagttgtcacaaaagttgtacaaaatagttgtacaaatatcttttctca 31869066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 14 - 65
Target Start/End: Complemental strand, 14817983 - 14817932
Alignment:
Q  14 gagaaagttgtcacaaaaattatacaaaatagttgtaaaaatatcatttctc 65  Q
    ||||||||||||||||||||| || |||||||||||  ||||||||||||||    
T  14817983 gagaaagttgtcacaaaaattgtaaaaaatagttgttcaaatatcatttctc 14817932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 14 - 72
Target Start/End: Complemental strand, 33651072 - 33651013
Alignment:
Q  14 gagaaagttgtcacaaaaatta-tacaaaatagttgtaaaaatatcatttctcatttaaa 72  Q
    |||||||||||||||||||||| |||||||||| |||  |||||||||||||| ||||||    
T  33651072 gagaaagttgtcacaaaaattattacaaaatagatgttcaaatatcatttctcttttaaa 33651013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 37 - 74
Target Start/End: Original strand, 29376758 - 29376795
Alignment:
Q  37 acaaaatagttgtaaaaatatcatttctcatttaaaaa 74  Q
    ||||||| ||||||||||||||||||||||||||||||    
T  29376758 acaaaatggttgtaaaaatatcatttctcatttaaaaa 29376795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 14 - 65
Target Start/End: Complemental strand, 17182151 - 17182099
Alignment:
Q  14 gagaaagttgtcacaaaaattat-acaaaatagttgtaaaaatatcatttctc 65  Q
    |||||| |||||||||||||||| | ||||||||||| |||||||||||||||    
T  17182151 gagaaaattgtcacaaaaattatcaaaaaatagttgttaaaatatcatttctc 17182099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 24 - 67
Target Start/End: Complemental strand, 277032 - 276989
Alignment:
Q  24 tcacaaaaattatacaaaatagttgtaaaaatatcatttctcat 67  Q
    |||||||||||||| |||||||||||  ||||||||||||||||    
T  277032 tcacaaaaattataaaaaatagttgttgaaatatcatttctcat 276989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 14 - 69
Target Start/End: Original strand, 25811858 - 25811913
Alignment:
Q  14 gagaaagttgtcacaaaaattatacaaaatagttgtaaaaatatcatttctcattt 69  Q
    |||||||||||||||||| || || ||||| |||||  ||||||||||||||||||    
T  25811858 gagaaagttgtcacaaaagttgtaaaaaatggttgttcaaatatcatttctcattt 25811913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 14 - 67
Target Start/End: Complemental strand, 31077844 - 31077791
Alignment:
Q  14 gagaaagttgtcacaaaaattatacaaaatagttgtaaaaatatcatttctcat 67  Q
    |||||||||||||||||| ||||| |||||  ||||  ||||||||||||||||    
T  31077844 gagaaagttgtcacaaaatttataaaaaatgattgttcaaatatcatttctcat 31077791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 14 - 67
Target Start/End: Complemental strand, 34047438 - 34047385
Alignment:
Q  14 gagaaagttgtcacaaaaattatacaaaatagttgtaaaaatatcatttctcat 67  Q
    |||||||||||||||||| || || ||||| |||||  ||||||||||||||||    
T  34047438 gagaaagttgtcacaaaagttgtaaaaaatggttgttcaaatatcatttctcat 34047385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 14 - 62
Target Start/End: Original strand, 34570614 - 34570663
Alignment:
Q  14 gagaaagttgtcacaaaaatta-tacaaaatagttgtaaaaatatcattt 62  Q
    |||||||||||||||||| ||| |||||||| |||||| |||||||||||    
T  34570614 gagaaagttgtcacaaaagttattacaaaatggttgtacaaatatcattt 34570663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 66
Target Start/End: Original strand, 8098615 - 8098667
Alignment:
Q  14 gagaaagttgtcacaaaaattatacaaaatagttgtaaaaatatcatttctca 66  Q
    |||||||||||||||||| || || ||||| |||||  |||||||||||||||    
T  8098615 gagaaagttgtcacaaaagttgtaaaaaatggttgttcaaatatcatttctca 8098667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.000000000005; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 17 - 65
Target Start/End: Complemental strand, 46213018 - 46212970
Alignment:
Q  17 aaagttgtcacaaaaattatacaaaatagttgtaaaaatatcatttctc 65  Q
    ||||||||||||||||||||| |||||||||||  ||||||||||||||    
T  46213018 aaagttgtcacaaaaattataaaaaatagttgttcaaatatcatttctc 46212970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 14 - 65
Target Start/End: Original strand, 55609185 - 55609236
Alignment:
Q  14 gagaaagttgtcacaaaaattatacaaaatagttgtaaaaatatcatttctc 65  Q
    |||||||||||||||||| || |||||||| |||||| ||||||||||||||    
T  55609185 gagaaagttgtcacaaaagttgtacaaaatggttgtacaaatatcatttctc 55609236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 14 - 65
Target Start/End: Complemental strand, 42815456 - 42815404
Alignment:
Q  14 gagaaagttgtcacaaaaattat-acaaaatagttgtaaaaatatcatttctc 65  Q
    |||||||||||||||||| || | |||||||||||||| ||||||||||||||    
T  42815456 gagaaagttgtcacaaaagttgttacaaaatagttgtacaaatatcatttctc 42815404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 14 - 65
Target Start/End: Complemental strand, 47288134 - 47288082
Alignment:
Q  14 gagaaagttgtcacaaaaattat-acaaaatagttgtaaaaatatcatttctc 65  Q
    ||||||||||||||||||||| | ||||||| |||||| ||||||||||||||    
T  47288134 gagaaagttgtcacaaaaattgttacaaaatggttgtacaaatatcatttctc 47288082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 14 - 65
Target Start/End: Original strand, 10250535 - 10250586
Alignment:
Q  14 gagaaagttgtcacaaaaattatacaaaatagttgtaaaaatatcatttctc 65  Q
    |||||||||||||||||| || || |||||||||||  ||||||||||||||    
T  10250535 gagaaagttgtcacaaaagttgtaaaaaatagttgttcaaatatcatttctc 10250586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 14 - 65
Target Start/End: Original strand, 27051106 - 27051157
Alignment:
Q  14 gagaaagttgtcacaaaaattatacaaaatagttgtaaaaatatcatttctc 65  Q
    ||||||||| |||||||||||||| ||||| |||||  ||||||||||||||    
T  27051106 gagaaagttatcacaaaaattataaaaaatggttgtttaaatatcatttctc 27051157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 39 - 74
Target Start/End: Original strand, 36871202 - 36871237
Alignment:
Q  39 aaaatagttgtaaaaatatcatttctcatttaaaaa 74  Q
    |||||||||||| |||||||||||||||||||||||    
T  36871202 aaaatagttgtacaaatatcatttctcatttaaaaa 36871237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 14 - 65
Target Start/End: Complemental strand, 44539787 - 44539736
Alignment:
Q  14 gagaaagttgtcacaaaaattatacaaaatagttgtaaaaatatcatttctc 65  Q
    ||||||||| |||||||||||||| ||||| |||||  ||||||||||||||    
T  44539787 gagaaagttatcacaaaaattataaaaaatggttgttcaaatatcatttctc 44539736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 15 - 65
Target Start/End: Original strand, 45779312 - 45779362
Alignment:
Q  15 agaaagttgtcacaaaaattat-acaaaatagttgtaaaaatatcatttctc 65  Q
    |||||||||||| ||||||||| |||||||||||||| ||||||||||||||    
T  45779312 agaaagttgtca-aaaaattataacaaaatagttgtataaatatcatttctc 45779362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 14 - 65
Target Start/End: Original strand, 50890093 - 50890144
Alignment:
Q  14 gagaaagttgtcacaaaaattatacaaaatagttgtaaaaatatcatttctc 65  Q
    |||||||||||||||||| || |  |||||||||||| ||||||||||||||    
T  50890093 gagaaagttgtcacaaaagttgtcaaaaatagttgtacaaatatcatttctc 50890144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 64
Target Start/End: Original strand, 336827 - 336877
Alignment:
Q  14 gagaaagttgtcacaaaaattatacaaaatagttgtaaaaatatcatttct 64  Q
    ||||||||||||||||||||| |  |||||| ||||| |||||||||||||    
T  336827 gagaaagttgtcacaaaaattgtcaaaaataattgtacaaatatcatttct 336877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 65
Target Start/End: Complemental strand, 38134403 - 38134353
Alignment:
Q  15 agaaagttgtcacaaaaattatacaaaatagttgtaaaaatatcatttctc 65  Q
    |||||||||||||||||||| || ||||| |||||  ||||||||||||||    
T  38134403 agaaagttgtcacaaaaattgtaaaaaatggttgttcaaatatcatttctc 38134353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 14 - 67
Target Start/End: Complemental strand, 5622509 - 5622456
Alignment:
Q  14 gagaaagttgtcacaaaaattatacaaaatagttgtaaaaatatcatttctcat 67  Q
    |||||||||||||||||| || || ||||| |||||  ||||||||||||||||    
T  5622509 gagaaagttgtcacaaaagttgtaaaaaatggttgttcaaatatcatttctcat 5622456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 19 - 64
Target Start/End: Original strand, 39731911 - 39731956
Alignment:
Q  19 agttgtcacaaaaattatacaaaatagttgtaaaaatatcatttct 64  Q
    ||||||||||||||||||| ||||| |||||  |||||||||||||    
T  39731911 agttgtcacaaaaattataaaaaatggttgtccaaatatcatttct 39731956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 14 - 74
Target Start/End: Original strand, 54251470 - 54251530
Alignment:
Q  14 gagaaagttgtcacaaaaatta-tacaaaatagttgtaaaaatatcatttctcatttaaaaa 74  Q
    ||||||||||||  |||||||| || |||||||||||| |||||||||||||||||| ||||    
T  54251470 gagaaagttgtc-gaaaaattattaaaaaatagttgtacaaatatcatttctcatttcaaaa 54251530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 65
Target Start/End: Original strand, 9472533 - 9472584
Alignment:
Q  14 gagaaagttgtcacaaaaatta-tacaaaatagttgtaaaaatatcatttctc 65  Q
    ||||||||||||| |||||||| || |||||||||||| ||||||||||||||    
T  9472533 gagaaagttgtca-aaaaattattagaaaatagttgtacaaatatcatttctc 9472584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 65
Target Start/End: Complemental strand, 20056447 - 20056396
Alignment:
Q  14 gagaaagttgtcacaaaaattata-caaaatagttgtaaaaatatcatttctc 65  Q
    |||||||||||| ||||||||||| || |||||||||| ||||||||||||||    
T  20056447 gagaaagttgtc-caaaaattataacataatagttgtacaaatatcatttctc 20056396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 65
Target Start/End: Original strand, 26724992 - 26725040
Alignment:
Q  17 aaagttgtcacaaaaattatacaaaatagttgtaaaaatatcatttctc 65  Q
    ||||||||||||||| ||||| |||||| ||||  ||||||||||||||    
T  26724992 aaagttgtcacaaaagttataaaaaataattgttcaaatatcatttctc 26725040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 66
Target Start/End: Complemental strand, 37997307 - 37997255
Alignment:
Q  14 gagaaagttgtcacaaaaattatacaaaatagttgtaaaaatatcatttctca 66  Q
    |||||||||||||||||| || || ||||| |||||  |||||||||||||||    
T  37997307 gagaaagttgtcacaaaagttgtaaaaaatggttgttcaaatatcatttctca 37997255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 65
Target Start/End: Original strand, 44170639 - 44170690
Alignment:
Q  14 gagaaagttgtcacaaaaattat-acaaaatagttgtaaaaatatcatttctc 65  Q
    ||||||||||||| ||||||||| ||||||| |||||| ||||||||||||||    
T  44170639 gagaaagttgtca-aaaaattataacaaaatggttgtacaaatatcatttctc 44170690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 65
Target Start/End: Original strand, 51225544 - 51225596
Alignment:
Q  14 gagaaagttgtcacaaaaattat-acaaaatagttgtaaaaatatcatttctc 65  Q
    ||||||||||||| ||||||||| ||||||||| |||  ||||||||||||||    
T  51225544 gagaaagttgtcataaaaattatcacaaaatagatgttcaaatatcatttctc 51225596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 65
Target Start/End: Original strand, 53654769 - 53654821
Alignment:
Q  14 gagaaagttgtcacaaaaattat-acaaaatagttgtaaaaatatcatttctc 65  Q
    ||||||||||||||||||||||| | ||||||| |||  ||||||||||||||    
T  53654769 gagaaagttgtcacaaaaattatcataaaatagatgttcaaatatcatttctc 53654821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 65
Target Start/End: Original strand, 53662448 - 53662499
Alignment:
Q  14 gagaaagttgtcacaaaaattat-acaaaatagttgtaaaaatatcatttctc 65  Q
    ||||||||||| ||||||||| | |||||||||||||| ||||||||||||||    
T  53662448 gagaaagttgt-acaaaaattgttacaaaatagttgtacaaatatcatttctc 53662499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.000000000005; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 14 - 73
Target Start/End: Original strand, 34134790 - 34134850
Alignment:
Q  14 gagaaagttgtcacaaaaattat-acaaaatagttgtaaaaatatcatttctcatttaaaa 73  Q
    ||||||||||||| |||| || | ||||||| |||||||||||||||||||||||||||||    
T  34134790 gagaaagttgtcagaaaagttgttacaaaatggttgtaaaaatatcatttctcatttaaaa 34134850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 14 - 65
Target Start/End: Complemental strand, 43487430 - 43487379
Alignment:
Q  14 gagaaagttgtcacaaaaattatacaaaatagttgtaaaaatatcatttctc 65  Q
    |||||||||||||||||||||||| ||||| |||||  ||||||||||||||    
T  43487430 gagaaagttgtcacaaaaattataaaaaatggttgttcaaatatcatttctc 43487379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 14 - 64
Target Start/End: Complemental strand, 4384106 - 4384056
Alignment:
Q  14 gagaaagttgtcacaaaaattatacaaaatagttgtaaaaatatcatttct 64  Q
    ||||||||||||||||||||| |||||||||| |||  |||||||||||||    
T  4384106 gagaaagttgtcacaaaaattgtacaaaatagatgttcaaatatcatttct 4384056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 14 - 67
Target Start/End: Original strand, 12784418 - 12784472
Alignment:
Q  14 gagaaagttgtcacaaaaatta-tacaaaatagttgtaaaaatatcatttctcat 67  Q
    |||||||||||||||||||||| || ||||| |||||| ||||||||||||||||    
T  12784418 gagaaagttgtcacaaaaattattataaaatggttgtacaaatatcatttctcat 12784472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 66
Target Start/End: Complemental strand, 38021406 - 38021355
Alignment:
Q  15 agaaagttgtcacaaaaattatac-aaaatagttgtaaaaatatcatttctca 66  Q
    |||||||||||| ||||||||||| |||||||||||| |||||||||||||||    
T  38021406 agaaagttgtca-aaaaattatactaaaatagttgtacaaatatcatttctca 38021355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 17 - 67
Target Start/End: Complemental strand, 8293278 - 8293227
Alignment:
Q  17 aaagttgtcacaaaaattat-acaaaatagttgtaaaaatatcatttctcat 67  Q
    |||||||| ||| ||||||| ||||||||||||| |||||||||||||||||    
T  8293278 aaagttgttacataaattatcacaaaatagttgtcaaaatatcatttctcat 8293227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 14 - 68
Target Start/End: Original strand, 40210087 - 40210142
Alignment:
Q  14 gagaaagttgtcacaaaaatta-tacaaaatagttgtaaaaatatcatttctcatt 68  Q
    |||||||||||||||||||||| |  |||||||||||  |||||||||||||||||    
T  40210087 gagaaagttgtcacaaaaattatttaaaaatagttgttcaaatatcatttctcatt 40210142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 67
Target Start/End: Complemental strand, 6328718 - 6328665
Alignment:
Q  14 gagaaagttgtcacaaaaattatac-aaaatagttgtaaaaatatcatttctcat 67  Q
    ||||||||||| ||||||||||||| ||||| |||||| ||||||||||||||||    
T  6328718 gagaaagttgt-acaaaaattataccaaaatggttgtacaaatatcatttctcat 6328665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 67
Target Start/End: Complemental strand, 33559690 - 33559637
Alignment:
Q  14 gagaaagttgtcacaaaaattatac-aaaatagttgtaaaaatatcatttctcat 67  Q
    |||||||||||| |||||||||||| ||||| |||||| ||||||||||||||||    
T  33559690 gagaaagttgtc-caaaaattatactaaaatggttgtacaaatatcatttctcat 33559637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 65
Target Start/End: Original strand, 1907786 - 1907835
Alignment:
Q  17 aaagttgtcacaaaaatta-tacaaaatagttgtaaaaatatcatttctc 65  Q
    ||||||||||||||||||| || |||||||||||| |||||| |||||||    
T  1907786 aaagttgtcacaaaaattattaaaaaatagttgtacaaatattatttctc 1907835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 62
Target Start/End: Original strand, 13766332 - 13766377
Alignment:
Q  17 aaagttgtcacaaaaattatacaaaatagttgtaaaaatatcattt 62  Q
    ||||||||||||||| ||||| ||||| |||||| |||||||||||    
T  13766332 aaagttgtcacaaaagttataaaaaatggttgtataaatatcattt 13766377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 14 - 66
Target Start/End: Original strand, 18876941 - 18876994
Alignment:
Q  14 gagaaagttgtcacaaaaatta-tacaaaatagttgtaaaaatatcatttctca 66  Q
    |||||||||||||||||||||| ||| |||||| |||  |||||||||||||||    
T  18876941 gagaaagttgtcacaaaaattattaccaaatagatgttcaaatatcatttctca 18876994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 21 - 65
Target Start/End: Original strand, 40358138 - 40358183
Alignment:
Q  21 ttgtcacaaaaattat-acaaaatagttgtaaaaatatcatttctc 65  Q
    |||||||||||||||| | |||||||||||| ||||||||||||||    
T  40358138 ttgtcacaaaaattattaaaaaatagttgtagaaatatcatttctc 40358183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 62
Target Start/End: Complemental strand, 9194292 - 9194244
Alignment:
Q  14 gagaaagttgtcacaaaaattatacaaaatagttgtaaaaatatcattt 62  Q
    ||||||| ||||||||||||| || |||||||||||  |||||||||||    
T  9194292 gagaaagatgtcacaaaaattgtaaaaaatagttgtccaaatatcattt 9194244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 66
Target Start/End: Original strand, 22888841 - 22888893
Alignment:
Q  14 gagaaagttgtcacaaaaattatacaaaatagttgtaaaaatatcatttctca 66  Q
    ||||||||||||||||||||| |  ||||| |||||  |||||||||||||||    
T  22888841 gagaaagttgtcacaaaaattgtcaaaaatggttgttcaaatatcatttctca 22888893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 65
Target Start/End: Complemental strand, 36517248 - 36517196
Alignment:
Q  14 gagaaagttgtcacaaaaattat-acaaaatagttgtaaaaatatcatttctc 65  Q
    ||||||||||||||||||||||| | ||||||| |||  ||||||||||||||    
T  36517248 gagaaagttgtcacaaaaattatcataaaatagatgttcaaatatcatttctc 36517196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 17 - 76
Target Start/End: Original strand, 5721840 - 5721899
Alignment:
Q  17 aaagttgtcacaaaaattatacaaaatagttgtaaaaatatcatttctcatttaaaaaat 76  Q
    |||||||||||||||||| || |||||||||||  |||||||||||||||| | ||||||    
T  5721840 aaagttgtcacaaaaattgtaaaaaatagttgttcaaatatcatttctcatgtgaaaaat 5721899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 14 - 66
Target Start/End: Original strand, 38293378 - 38293431
Alignment:
Q  14 gagaaagttgtcacaaaaattat-acaaaatagttgtaaaaatatcatttctca 66  Q
    ||||||||||||||||||||| | | ||||| ||||||||||||||||||||||    
T  38293378 gagaaagttgtcacaaaaattgttataaaatggttgtaaaaatatcatttctca 38293431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 14 - 69
Target Start/End: Complemental strand, 6538921 - 6538866
Alignment:
Q  14 gagaaagttgtcacaaaaattat-acaaaatagttgtaaaaatatcatttctcattt 69  Q
    ||||||||||||| ||||||||| |||||||| ||||| ||||||||||||||||||    
T  6538921 gagaaagttgtca-aaaaattatcacaaaataattgtacaaatatcatttctcattt 6538866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 14 - 65
Target Start/End: Original strand, 6940169 - 6940221
Alignment:
Q  14 gagaaagttgtcacaaaaatta-tacaaaatagttgtaaaaatatcatttctc 65  Q
    |||||||||||||||||||||| || ||||| |||||| ||||||||||||||    
T  6940169 gagaaagttgtcacaaaaattattataaaatggttgtacaaatatcatttctc 6940221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 14 - 65
Target Start/End: Complemental strand, 11954483 - 11954431
Alignment:
Q  14 gagaaagttgtcacaaaaattatacaa-aatagttgtaaaaatatcatttctc 65  Q
    |||||||||||||||||||||||| || |||||||||  ||||||||||||||    
T  11954483 gagaaagttgtcacaaaaattataaaacaatagttgttcaaatatcatttctc 11954431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 14 - 65
Target Start/End: Complemental strand, 26686933 - 26686881
Alignment:
Q  14 gagaaagttgtcacaaaaatta-tacaaaatagttgtaaaaatatcatttctc 65  Q
    |||||||||||||||||||||| || |||||| ||||| ||||||||||||||    
T  26686933 gagaaagttgtcacaaaaattattaaaaaataattgtataaatatcatttctc 26686881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 14 - 65
Target Start/End: Complemental strand, 26956664 - 26956612
Alignment:
Q  14 gagaaagttgtcacaaaaatta-tacaaaatagttgtaaaaatatcatttctc 65  Q
    |||||||||||||||||||||| || |||||| ||||| ||||||||||||||    
T  26956664 gagaaagttgtcacaaaaattattaaaaaataattgtataaatatcatttctc 26956612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 14 - 65
Target Start/End: Original strand, 1079972 - 1080023
Alignment:
Q  14 gagaaagttgtcacaaaaattatacaaaatagttgtaaaaatatcatttctc 65  Q
    ||||||||||||||||||||| || |||||| ||||  ||||||||||||||    
T  1079972 gagaaagttgtcacaaaaattgtaaaaaataattgttcaaatatcatttctc 1080023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 15 - 69
Target Start/End: Complemental strand, 5382592 - 5382537
Alignment:
Q  15 agaaagttgtcacaaaaattata-caaaatagttgtaaaaatatcatttctcattt 69  Q
    |||||||||||| |||||||||| || ||| |||||| ||||||||||||||||||    
T  5382592 agaaagttgtcaaaaaaattataacataattgttgtacaaatatcatttctcattt 5382537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 68
Target Start/End: Complemental strand, 39054638 - 39054584
Alignment:
Q  14 gagaaagttgtcacaaaaattatacaaaatagttgtaaaaatatcatttctcatt 68  Q
    ||||||||||||| |||||||||  |||||| ||||  |||||||||||||||||    
T  39054638 gagaaagttgtcaaaaaaattatcaaaaataattgttcaaatatcatttctcatt 39054584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 70
Target Start/End: Complemental strand, 40039335 - 40039285
Alignment:
Q  21 ttgtcacaaaaattat-acaaaatagttgtaaaaatatcatttctcattta 70  Q
    |||||||||||||||| | |||||||||||  |||||||||||||||||||    
T  40039335 ttgtcacaaaaattatcaaaaaatagttgttcaaatatcatttctcattta 40039285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 37 - 70
Target Start/End: Original strand, 14070658 - 14070691
Alignment:
Q  37 acaaaatagttgtaaaaatatcatttctcattta 70  Q
    |||||||||||||| |||||||||||||||||||    
T  14070658 acaaaatagttgtacaaatatcatttctcattta 14070691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 21 - 69
Target Start/End: Complemental strand, 40829459 - 40829410
Alignment:
Q  21 ttgtcacaaaaattat-acaaaatagttgtaaaaatatcatttctcattt 69  Q
    |||||||||||||||| | ||||| |||||| ||||||||||||||||||    
T  40829459 ttgtcacaaaaattattaaaaaatggttgtacaaatatcatttctcattt 40829410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 65
Target Start/End: Original strand, 582910 - 582938
Alignment:
Q  37 acaaaatagttgtaaaaatatcatttctc 65  Q
    |||||||||||||||||||||||||||||    
T  582910 acaaaatagttgtaaaaatatcatttctc 582938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 65
Target Start/End: Complemental strand, 18695370 - 18695318
Alignment:
Q  14 gagaaagttgtcacaaaaattat-acaaaatagttgtaaaaatatcatttctc 65  Q
    |||||||||||||||||| || | ||||||| |||||| ||||||||||||||    
T  18695370 gagaaagttgtcacaaaagttgttacaaaatggttgtacaaatatcatttctc 18695318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 65
Target Start/End: Original strand, 19844328 - 19844380
Alignment:
Q  14 gagaaagttgtcacaaaaattat-acaaaatagttgtaaaaatatcatttctc 65  Q
    ||||||||| |||||||| |||| | |||||||||||| ||||||||||||||    
T  19844328 gagaaagttatcacaaaagttatcaaaaaatagttgtacaaatatcatttctc 19844380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 65
Target Start/End: Original strand, 20985549 - 20985600
Alignment:
Q  14 gagaaagttgtcacaaaaattatacaaaa-tagttgtaaaaatatcatttctc 65  Q
    ||||||||||| ||||||||||||||||| | |||||| ||||||||||||||    
T  20985549 gagaaagttgt-acaaaaattatacaaaaatggttgtacaaatatcatttctc 20985600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 62
Target Start/End: Complemental strand, 32639094 - 32639046
Alignment:
Q  14 gagaaagttgtcacaaaaattatacaaaatagttgtaaaaatatcattt 62  Q
    |||||||||||||||||| || ||||||||  ||||| |||||||||||    
T  32639094 gagaaagttgtcacaaaatttgtacaaaatgattgtacaaatatcattt 32639046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 69
Target Start/End: Original strand, 39807737 - 39807789
Alignment:
Q  17 aaagttgtcacaaaaattatacaaaatagttgtaaaaatatcatttctcattt 69  Q
    |||||||||| ||||||| || ||||| |||||  ||||||||||||||||||    
T  39807737 aaagttgtcataaaaattgtaaaaaatggttgttcaaatatcatttctcattt 39807789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 65
Target Start/End: Complemental strand, 41192638 - 41192587
Alignment:
Q  14 gagaaagttgtcacaaaaattata-caaaatagttgtaaaaatatcatttctc 65  Q
    ||||||||||||| ||||||| || ||||||||||||| ||||||||||||||    
T  41192638 gagaaagttgtca-aaaaattgtagcaaaatagttgtacaaatatcatttctc 41192587  T

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Target: scaffold0178 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0178
Description:

Target: scaffold0178; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 14 - 67
Target Start/End: Complemental strand, 9828 - 9774
Alignment:
Q  14 gagaaagttgtcacaaaaattat-acaaaatagttgtaaaaatatcatttctcat 67  Q
    ||||||||||||||||||||||| | ||||| |||||| ||||||||||||||||    
T  9828 gagaaagttgtcacaaaaattataaaaaaatggttgtacaaatatcatttctcat 9774  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 13 - 70
Target Start/End: Complemental strand, 23845017 - 23844960
Alignment:
Q  13 tgagaaagttgtcacaaaaattatacaaaatagttgtaaaaatatcatttctcattta 70  Q
    ||||||| ||||||||||| |  |||||||| |||||| |||||||||||||||||||    
T  23845017 tgagaaaattgtcacaaaattattacaaaattgttgtacaaatatcatttctcattta 23844960  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 14 - 65
Target Start/End: Complemental strand, 46829531 - 46829479
Alignment:
Q  14 gagaaagttgtcacaaaaattat-acaaaatagttgtaaaaatatcatttctc 65  Q
    ||||||||||||||||||||| | ||||||| |||||| ||||||||||||||    
T  46829531 gagaaagttgtcacaaaaattgttacaaaatggttgtacaaatatcatttctc 46829479  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 14 - 64
Target Start/End: Complemental strand, 17039208 - 17039158
Alignment:
Q  14 gagaaagttgtcacaaaaattatacaaaa-tagttgtaaaaatatcatttct 64  Q
    ||||||||||| ||||||||||||||||| |||||||| |||||||||||||    
T  17039208 gagaaagttgt-acaaaaattatacaaaaatagttgtacaaatatcatttct 17039158  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 14 - 66
Target Start/End: Original strand, 29723946 - 29724000
Alignment:
Q  14 gagaaagttgtcacaaaaattat--acaaaatagttgtaaaaatatcatttctca 66  Q
    |||||||||||||||||||||||  | |||||||||||  |||||||||||||||    
T  29723946 gagaaagttgtcacaaaaattatcaaaaaaatagttgttcaaatatcatttctca 29724000  T

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Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 15 - 70
Target Start/End: Original strand, 41189564 - 41189619
Alignment:
Q  15 agaaagttgtcacaaaaattatacaaaatagttgtaaaaatatcatttctcattta 70  Q
    ||||||||||||||||||||||| ||||| |||||  | |||||||||||| ||||    
T  41189564 agaaagttgtcacaaaaattataaaaaatggttgttcatatatcatttctctttta 41189619  T

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Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 13 - 62
Target Start/End: Complemental strand, 10578120 - 10578071
Alignment:
Q  13 tgagaaagttgtcacaaaaattatacaaaatagttgtaaaaatatcattt 62  Q
    ||||||||||||||||||||||||  ||||||| |||  |||||||||||    
T  10578120 tgagaaagttgtcacaaaaattatcaaaaatagatgttcaaatatcattt 10578071  T

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Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 65
Target Start/End: Complemental strand, 15564960 - 15564911
Alignment:
Q  17 aaagttgtcacaaaaattata-caaaatagttgtaaaaatatcatttctc 65  Q
    |||||||||||||||||| |  ||||||||||||| ||||||||||||||    
T  15564960 aaagttgtcacaaaaattgtcgcaaaatagttgtacaaatatcatttctc 15564911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 65
Target Start/End: Complemental strand, 30061333 - 30061281
Alignment:
Q  14 gagaaagttgtcacaaaaattat-acaaaatagttgtaaaaatatcatttctc 65  Q
    |||||| |||||||||||||| | | ||||||||||| |||||||||||||||    
T  30061333 gagaaaattgtcacaaaaattgtcaaaaaatagttgttaaaatatcatttctc 30061281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 62
Target Start/End: Original strand, 32529874 - 32529922
Alignment:
Q  14 gagaaagttgtcacaaaaattatacaaaatagttgtaaaaatatcattt 62  Q
    ||||||||||| |||||| ||||| |||||||||||  |||||||||||    
T  32529874 gagaaagttgttacaaaagttataaaaaatagttgttcaaatatcattt 32529922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 73
Target Start/End: Complemental strand, 33050211 - 33050175
Alignment:
Q  37 acaaaatagttgtaaaaatatcatttctcatttaaaa 73  Q
    ||||||| |||||| ||||||||||||||||||||||    
T  33050211 acaaaatggttgtacaaatatcatttctcatttaaaa 33050175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 68
Target Start/End: Original strand, 42598230 - 42598282
Alignment:
Q  17 aaagttgtcacaaaaattat-acaaaatagttgtaaaaatatcatttctcatt 68  Q
    |||||| ||||||||||| | | |||||||||||| |||||||||||||||||    
T  42598230 aaagttatcacaaaaattgttaaaaaatagttgtacaaatatcatttctcatt 42598282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 66
Target Start/End: Original strand, 44189330 - 44189382
Alignment:
Q  14 gagaaagttgtcacaaaaattatacaaaatagttgtaaaaatatcatttctca 66  Q
    |||||||||| ||||||| ||||| ||||| |||||  |||||||||||||||    
T  44189330 gagaaagttgacacaaaagttataaaaaatggttgttcaaatatcatttctca 44189382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 14 - 65
Target Start/End: Complemental strand, 43715926 - 43715875
Alignment:
Q  14 gagaaagttgtcacaaaaattatacaaaatagttgtaaaaatatcatttctc 65  Q
    |||||||||||||||||| || || ||||| |||||| ||||||||||||||    
T  43715926 gagaaagttgtcacaaaagttttagaaaatggttgtacaaatatcatttctc 43715875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 76
Target Start/End: Complemental strand, 10902756 - 10902694
Alignment:
Q  14 gagaaagttgtcacaaaaattatacaaaatagttgtaaaaatatcatttctcatttaaaaaat 76  Q
    ||||||||||| |||||||||||  ||||| ||| |  |||||||||||||||| ||||||||    
T  10902756 gagaaagttgttacaaaaattatcaaaaatggttattcaaatatcatttctcatataaaaaat 10902694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 67
Target Start/End: Original strand, 42786679 - 42786733
Alignment:
Q  14 gagaaagttgtcacaaaaattat-acaaaatagttgtaaaaatatcatttctcat 67  Q
    ||||||||||||||||||||| | | ||||| |||||| ||||||||||||||||    
T  42786679 gagaaagttgtcacaaaaattgtaagaaaatggttgtacaaatatcatttctcat 42786733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 65
Target Start/End: Complemental strand, 2621834 - 2621785
Alignment:
Q  17 aaagttgtcacaaaaattat-acaaaatagttgtaaaaatatcatttctc 65  Q
    ||||||||||||||| |||| ||||| |||||||| ||||||||||||||    
T  2621834 aaagttgtcacaaaagttatcacaaattagttgtataaatatcatttctc 2621785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 14 - 67
Target Start/End: Original strand, 7814612 - 7814665
Alignment:
Q  14 gagaaagttgtcacaaaaattatacaaaatagttgtaaaaatatcatttctcat 67  Q
    |||||||||||||||||| |  || ||||| ||| |||||||||||||||||||    
T  7814612 gagaaagttgtcacaaaattgttaaaaaatggttctaaaaatatcatttctcat 7814665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 61
Target Start/End: Complemental strand, 34578274 - 34578229
Alignment:
Q  17 aaagttgtcacaaaaattatac-aaaatagttgtaaaaatatcatt 61  Q
    ||||||||| |||||||||||| ||||||||||| |||||||||||    
T  34578274 aaagttgtcccaaaaattataccaaaatagttgttaaaatatcatt 34578229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 65
Target Start/End: Complemental strand, 6440133 - 6440081
Alignment:
Q  14 gagaaagttgtcacaaaaattataca-aaatagttgtaaaaatatcatttctc 65  Q
    |||||||||||||||||| || || | ||||||||||| ||||||||||||||    
T  6440133 gagaaagttgtcacaaaagttgtaaagaaatagttgtacaaatatcatttctc 6440081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 65
Target Start/End: Original strand, 10644821 - 10644873
Alignment:
Q  14 gagaaagttgtcacaaaaattat-acaaaatagttgtaaaaatatcatttctc 65  Q
    |||||||||||||||||| || | ||||||| |||||| ||||||||||||||    
T  10644821 gagaaagttgtcacaaaagttgttacaaaatggttgtacaaatatcatttctc 10644873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 65
Target Start/End: Complemental strand, 10692487 - 10692439
Alignment:
Q  17 aaagttgtcacaaaaattatacaaaatagttgtaaaaatatcatttctc 65  Q
    ||||||||||||||||||||| |||||  ||||  ||||||||||||||    
T  10692487 aaagttgtcacaaaaattataaaaaatgattgttcaaatatcatttctc 10692439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 66
Target Start/End: Complemental strand, 27325809 - 27325757
Alignment:
Q  14 gagaaagttgtcacaaaaattatacaaaatagttgtaaaaatatcatttctca 66  Q
    |||||||||||||||||| || || ||||| |||||  |||||||||||||||    
T  27325809 gagaaagttgtcacaaaagttgtaaaaaatggttgttcaaatatcatttctca 27325757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 65
Target Start/End: Complemental strand, 38675655 - 38675603
Alignment:
Q  14 gagaaagttgtcacaaaaattata-caaaatagttgtaaaaatatcatttctc 65  Q
    ||||||||||||| ||||||||||  ||||| |||||| ||||||||||||||    
T  38675655 gagaaagttgtcataaaaattatagaaaaatggttgtacaaatatcatttctc 38675603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0687 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0687
Description:

Target: scaffold0687; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 14 - 67
Target Start/End: Complemental strand, 7111 - 7058
Alignment:
Q  14 gagaaagttgtcacaaaaattatacaaaatagttgtaaaaatatcatttctcat 67  Q
    |||||||||||||||||| |  || ||||| ||| |||||||||||||||||||    
T  7111 gagaaagttgtcacaaaattgttaaaaaatggttctaaaaatatcatttctcat 7058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 65
Target Start/End: Complemental strand, 36053 - 36002
Alignment:
Q  14 gagaaagttgtcacaaaaattat-acaaaatagttgtaaaaatatcatttctc 65  Q
    ||||||||||||| ||||||||| ||||| |||||||| ||||||||||||||    
T  36053 gagaaagttgtca-aaaaattatcacaaagtagttgtacaaatatcatttctc 36002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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