View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3714_low_1 (Length: 629)

Name: NF3714_low_1
Description: NF3714
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3714_low_1
NF3714_low_1
[»] chr1 (5 HSPs)
chr1 (14-615)||(12637329-12637930)
chr1 (317-610)||(12610626-12610925)
chr1 (317-608)||(15885125-15885422)
chr1 (14-111)||(15885534-15885631)
chr1 (14-97)||(12610236-12610319)
[»] scaffold0059 (2 HSPs)
scaffold0059 (317-603)||(62762-63051)
scaffold0059 (14-111)||(62484-62581)
[»] chr6 (1 HSPs)
chr6 (14-111)||(21780144-21780241)
[»] chr3 (7 HSPs)
chr3 (14-111)||(23036501-23036598)
chr3 (12-114)||(23140375-23140477)
chr3 (14-114)||(23024603-23024703)
chr3 (14-114)||(23149089-23149189)
chr3 (14-107)||(23146251-23146344)
chr3 (460-590)||(23039798-23039928)
chr3 (14-111)||(23039372-23039469)
[»] scaffold0554 (2 HSPs)
scaffold0554 (457-594)||(5631-5768)
scaffold0554 (46-111)||(6326-6391)


Alignment Details
Target: chr1 (Bit Score: 545; Significance: 0; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 545; E-Value: 0
Query Start/End: Original strand, 14 - 615
Target Start/End: Original strand, 12637329 - 12637930
Alignment:
Q  14 ctttcttcatcactcttggatcccttactaactctgccattgcccaaactatggtagtggatgatgtttcacctccagcaccaatcatgtcctgaaaaat 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  12637329 ctttcttcatcactcttggatcccttactaactctgccattgcccaaactatggtagtggatgatgtttcacctccagcaccaatgatgtcctgaaaaat 12637428  T
Q  114 atatcaggatatcaaaaaagactactaaagtctaaaagagataatttgatagcatcaatcgcaaggttttaaattgtggttgcgtcgcaatctttgatat 213  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||| | ||||||||| |||||||||||||||||||||||||||||||||||||||    
T  12637429 atatcaggatttcaaaaaagactactaaagtctaaaagagataatttgttggcatcaatcacaaggttttaaattgtggttgcgtcgcaatctttgatat 12637528  T
Q  214 tgcaataatcaagaatctgaatcgtgattatatcgtgtttgctgatacaccaaaaaccttgatatgtcgcggcctatggaaaacattannnnnnncaaaa 313  Q
    |||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||| |||       |||||    
T  12637529 tgcaataatcaagaatctgaatcgtgattatatcgtgttttctaatacaccaaaaaccttgatatgtcgcggcctatggaaaacgttatttttttcaaaa 12637628  T
Q  314 ggcttattatacttaccaggattatagccttgatattgttgtcagttaagcatatatcttggtcaatatcattaccaccttgaaatttttgaagaacatc 413  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12637629 ggcttattatacttaccaggattatagccttgatattgttgtcagttaagcatatatcttggtcaatatcattaccaccttgaaatttttgaagaacatc 12637728  T
Q  414 taccagatcttcctctacttcaccttcttttgcttttgacttagcttctttatgttcattgatgatgtttactaatataagatcaatttgtctatgcaat 513  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12637729 taccagatcttcctctacttcgccttcttttgcttttgacttagcttctttatgttcattgatgatgtttactaatataagatcaatttgtctatgcaat 12637828  T
Q  514 acctcaattttagacctgaaaccagaaactagttgaagccatttagctgaaggaaacaattcacctatgtcaaaacctcctccaactgattctccatttg 613  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12637829 acctcaattttagacctgaaaccagaaactagttgaagccatttagctgaaggaaacaattcacctatgtcaaaacctcctccaactgattctccatttg 12637928  T
Q  614 cc 615  Q
    ||    
T  12637929 cc 12637930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 317 - 610
Target Start/End: Original strand, 12610626 - 12610925
Alignment:
Q  317 ttattatacttaccaggattatagccttgatattgttgtcagttaagcatatatcttggtcaatatcattaccaccttgaaatttttgaagaacatctac 416  Q
    ||||||| |||||||||||||||| |||||||||||| |||||||| |||||||||||||   | |||||||||||||| |||||| ||||||| |||||    
T  12610626 ttattatccttaccaggattatagacttgatattgttatcagttaaacatatatcttggttgctgtcattaccaccttggaattttagaagaacgtctac 12610725  T
Q  417 cagatcttcctctacttcacctt------cttttgcttttgacttagcttctttatgttcattgatgatgtttactaatataagatcaatttgtctatgc 510  Q
    ||||||||| ||| || ||||||      | |||||||||||||| ||||||||||||||| |||  |||||| ||| |||  |||||||||| ||||||    
T  12610726 cagatcttcttcttctccaccttgactttcatttgcttttgactttgcttctttatgttcagtgacaatgttttctagtatttgatcaatttgcctatgc 12610825  T
Q  511 aatacctcaattttagacctgaaaccagaaactagttgaagccatttagctgaaggaaacaattcacctatgtcaaaacctcctccaactgattctccat 610  Q
    ||   ||| | ||||| ||| ||||| |||||  ||||||||||||| ||||||||||| |||||| ||||||||||||||||| ||| |||||||||||    
T  12610826 aacctctccagtttaggcctcaaaccggaaacacgttgaagccatttcgctgaaggaaataattcagctatgtcaaaacctcctgcaattgattctccat 12610925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 317 - 608
Target Start/End: Complemental strand, 15885422 - 15885125
Alignment:
Q  317 ttattatacttaccaggattatagccttgatattgttgtcagttaagcatatatcttggtcaatatcattaccaccttgaaatttttgaagaacatctac 416  Q
    ||||||| ||||| |||| || ||||||||| |||||||||||||||||||||||||  ||| ||||||| | || |||  ||||| ||||||| || ||    
T  15885422 ttattatccttactaggagtacagccttgatgttgttgtcagttaagcatatatctttttcattatcattgcgacgttggtattttagaagaacgtcaac 15885323  T
Q  417 cagatcttcctctacttcacctt------cttttgcttttgacttagcttctttatgttcattgatgatgtttactaatataagatcaatttgtctatgc 510  Q
    || |||||| ||| ||||  |||      ||||||||||||| || ||||||||||||||| ||||||||||| ||| |||  |||||||  ||||||||    
T  15885322 caaatcttcttctgcttcttcttggcattcttttgcttttgaatttgcttctttatgttcaatgatgatgttttctagtattcgatcaatacgtctatgc 15885223  T
Q  511 aatacctcaattttagacctgaaaccagaaactagttgaagccatttagctgaaggaaacaattcacctatgtcaaaacctcctccaactgattctcc 608  Q
    ||   ||||| ||||| ||| ||||| ||||| ||||||| |||||||| ||||||||||| |||||||||||||||||||||  ||| |||||||||    
T  15885222 aacctctcaagtttaggcctcaaaccggaaacaagttgaatccatttagatgaaggaaacagttcacctatgtcaaaacctccagcaattgattctcc 15885125  T

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Target: chr1; HSP #4
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 14 - 111
Target Start/End: Complemental strand, 15885631 - 15885534
Alignment:
Q  14 ctttcttcatcactcttggatcccttactaactctgccattgcccaaactatggtagtggatgatgtttcacctccagcaccaatcatgtcctgaaaa 111  Q
    |||||||||||||||||  ||||||||| |||||||||||||||||||||||||| ||    ||||| || ||||||||||||| |||||||||||||    
T  15885631 ctttcttcatcactctttcatcccttaccaactctgccattgcccaaactatggtggtactcgatgtatctcctccagcaccaaacatgtcctgaaaa 15885534  T

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Target: chr1; HSP #5
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 14 - 97
Target Start/End: Original strand, 12610236 - 12610319
Alignment:
Q  14 ctttcttcatcactcttggatcccttactaactctgccattgcccaaactatggtagtggatgatgtttcacctccagcaccaa 97  Q
    |||||||||||||||||  ||||||||| ||||||| ||||||||||||||| ||||  | |||||| ||||||||||||||||    
T  12610236 ctttcttcatcactcttttatcccttaccaactctgacattgcccaaactatagtagaagctgatgtatcacctccagcaccaa 12610319  T

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Target: scaffold0059 (Bit Score: 64; Significance: 1e-27; HSPs: 2)
Name: scaffold0059
Description:

Target: scaffold0059; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 317 - 603
Target Start/End: Original strand, 62762 - 63051
Alignment:
Q  317 ttattatacttaccaggattatagccttgatattgttgtcagttaagcatatatcttggtcaatatcattaccaccttgaaatttttgaagaacatctac 416  Q
    ||||||||||||||| || ||||||||| ||||||||||  || ||| |||||||||||||  | |||| |||||| ||||| ||| ||||||| |||||    
T  62762 ttattatacttaccaagagtatagccttaatattgttgttggtcaaggatatatcttggtcgctgtcatcaccaccctgaaactttagaagaacgtctac 62861  T
Q  417 cagatcttcctctac---ttcaccttcttttgcttttgacttagcttctttatgttcattgatgatgtttactaatataagatcaatttgtctatgcaat 513  Q
    |||||||||  || |   ||  ||||||||| ||||| |||| ||||||||||||| | ||| ||||||| | | |||  |||||| ||||||||||||     
T  62862 cagatcttctgcttcagtttgtccttctttttcttttaactttgcttctttatgttgaatgacgatgttttcaagtatctgatcaagttgtctatgcaac 62961  T
Q  514 acctcaattttagacctgaaaccagaaactagttgaagccatttagctgaaggaaacaattcacctatgtcaaaacctcctccaactgat 603  Q
      || || ||||| |||   |  | | |  |||||||||||||| ||||||||||| ||||||  ||| |||||||||||||||| ||||    
T  62962 ctcttaagtttaggcctttgattaaatataagttgaagccatttggctgaaggaaataattcaattatttcaaaacctcctccaattgat 63051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0059; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 14 - 111
Target Start/End: Original strand, 62484 - 62581
Alignment:
Q  14 ctttcttcatcactcttggatcccttactaactctgccattgcccaaactatggtagtggatgatgtttcacctccagcaccaatcatgtcctgaaaa 111  Q
    |||||||||||||||||||||| ||||| |||||||||||||||||||||| | |    | |||||| |||||||||||||||| |||||||||||||    
T  62484 ctttcttcatcactcttggatctcttaccaactctgccattgcccaaactacgctcaaagctgatgtatcacctccagcaccaaacatgtcctgaaaa 62581  T

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Target: chr6 (Bit Score: 46; Significance: 6e-17; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 14 - 111
Target Start/End: Original strand, 21780144 - 21780241
Alignment:
Q  14 ctttcttcatcactcttggatcccttactaactctgccattgcccaaactatggtagtggatgatgtttcacctccagcaccaatcatgtcctgaaaa 111  Q
    |||||||||| | ||||||||||||||| |  ||| ||||||||||| |||||||  | | |||||| |||||||||||||||| |||||||||||||    
T  21780144 ctttcttcattattcttggatcccttaccatttctaccattgcccaatctatggtgcttgctgatgtctcacctccagcaccaaacatgtcctgaaaa 21780241  T

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Target: chr3 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 14 - 111
Target Start/End: Original strand, 23036501 - 23036598
Alignment:
Q  14 ctttcttcatcactcttggatcccttactaactctgccattgcccaaactatggtagtggatgatgtttcacctccagcaccaatcatgtcctgaaaa 111  Q
    |||||||||| | |||||||| |||||| |  ||||||||||||||| |||||||  | | |||||| ||||||||||||||||  ||||||||||||    
T  23036501 ctttcttcattattcttggattccttaccatttctgccattgcccaatctatggtgcttgctgatgtctcacctccagcaccaaaaatgtcctgaaaa 23036598  T

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Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 12 - 114
Target Start/End: Original strand, 23140375 - 23140477
Alignment:
Q  12 cactttcttcatcactcttggatcccttactaactctgccattgcccaaactatggtagtggatgatgtttcacctccagcaccaatcatgtcctgaaaa 111  Q
    |||||||||||| | ||||||||||||||  |  ||| ||||||||||| |||||||  | | |||||| ||||||||||||||||  |||||||||| |    
T  23140375 cactttcttcattattcttggatcccttatcatttctaccattgcccaatctatggtgcttgctgatgtctcacctccagcaccaaaaatgtcctgaaca 23140474  T
Q  112 ata 114  Q
    |||    
T  23140475 ata 23140477  T

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Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 14 - 114
Target Start/End: Original strand, 23024603 - 23024703
Alignment:
Q  14 ctttcttcatcactcttggatcccttactaactctgccattgcccaaactatggtagtggatgatgtttcacctccagcaccaatcatgtcctgaaaaat 113  Q
    |||||||||| | |||||||| | |||| |  ||||||||||||||| |||||||  | | |||||| ||||||||||||||||  |||||||||| |||    
T  23024603 ctttcttcattattcttggattctttaccatttctgccattgcccaatctatggtgcttgctgatgtctcacctccagcaccaaaaatgtcctgaacaat 23024702  T
Q  114 a 114  Q
    |    
T  23024703 a 23024703  T

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Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 14 - 114
Target Start/End: Original strand, 23149089 - 23149189
Alignment:
Q  14 ctttcttcatcactcttggatcccttactaactctgccattgcccaaactatggtagtggatgatgtttcacctccagcaccaatcatgtcctgaaaaat 113  Q
    |||||||||| | |||||||||| |||| | |||| ||||||||||| |||||||  | | |||||| || |||||||||||||  |||||||||| |||    
T  23149089 ctttcttcattattcttggatcctttaccatctctaccattgcccaatctatggtgcttgctgatgtctcgcctccagcaccaaaaatgtcctgaacaat 23149188  T
Q  114 a 114  Q
    |    
T  23149189 a 23149189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 14 - 107
Target Start/End: Original strand, 23146251 - 23146344
Alignment:
Q  14 ctttcttcatcactcttggatcccttactaactctgccattgcccaaactatggtagtggatgatgtttcacctccagcaccaatcatgtcctg 107  Q
    |||||||||| | |||||||||| |||| || ||| ||||||||||| |||||||  | | |||||| |||||||||||| |||  ||||||||    
T  23146251 ctttcttcatgattcttggatcctttaccaattctaccattgcccaatctatggtgcttgctgatgtctcacctccagcagcaaaaatgtcctg 23146344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 460 - 590
Target Start/End: Original strand, 23039798 - 23039928
Alignment:
Q  460 tctttatgttcattgatgatgtttactaatataagatcaatttgtctatgcaatacctcaattttagacctgaaaccagaaactagttgaagccatttag 559  Q
    |||||||| ||||||||||||||| |||||||  ||||| |||||| ||| ||   |||||  |||| ||| | ||||| ||| || || | ||||||||    
T  23039798 tctttatgctcattgatgatgttttctaatatctgatcagtttgtcgatgaaacctctcaagcttaggcctcataccagtaacaagctgtaaccatttag 23039897  T
Q  560 ctgaaggaaacaattcacctatgtcaaaacc 590  Q
    |||| |||||||| || || | |||||||||    
T  23039898 ctgagggaaacaaatctcccaagtcaaaacc 23039928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 14 - 111
Target Start/End: Original strand, 23039372 - 23039469
Alignment:
Q  14 ctttcttcatcactcttggatcccttactaactctgccattgcccaaactatggtagtggatgatgtttcacctccagcaccaatcatgtcctgaaaa 111  Q
    |||||||||| | ||||||||||||||  |  ||| ||||||||||  |||||||  | | |||||| ||||||||||||||||  | ||||||||||    
T  23039372 ctttcttcattattcttggatcccttatcatttctaccattgcccagtctatggtgcttgctgatgtctcacctccagcaccaaaaacgtcctgaaaa 23039469  T

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Target: scaffold0554 (Bit Score: 38; Significance: 0.000000000004; HSPs: 2)
Name: scaffold0554
Description:

Target: scaffold0554; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 457 - 594
Target Start/End: Complemental strand, 5768 - 5631
Alignment:
Q  457 gcttctttatgttcattgatgatgtttactaatataagatcaatttgtctatgcaatacctcaattttagacctgaaaccagaaactagttgaagccatt 556  Q
    ||||||||||| ||||||||||||||| | | |||  ||||| |||||| ||| |  | |||||  |||| ||| ||||||| |||| |||| |||||||    
T  5768 gcttctttatgctcattgatgatgttttcaagtatttgatcagtttgtcgatgaagcatctcaagcttaggcctcaaaccagtaacttgttgtagccatt 5669  T
Q  557 tagctgaaggaaacaattcacctatgtcaaaacctcct 594  Q
    |||| || |||||||| || || | |||||||||||||    
T  5668 tagcagatggaaacaaatctcccaagtcaaaacctcct 5631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0554; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 46 - 111
Target Start/End: Complemental strand, 6391 - 6326
Alignment:
Q  46 tctgccattgcccaaactatggtagtggatgatgtttcacctccagcaccaatcatgtcctgaaaa 111  Q
    ||||||||||||||| ||||||| || | |||||| ||||||||||||||||  ||||||| ||||    
T  6391 tctgccattgcccaatctatggtggttgctgatgtatcacctccagcaccaaaaatgtcctaaaaa 6326  T

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