View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3714_low_5 (Length: 255)

Name: NF3714_low_5
Description: NF3714
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3714_low_5
NF3714_low_5
[»] chr1 (1 HSPs)
chr1 (1-238)||(50234519-50234756)
[»] chr3 (6 HSPs)
chr3 (14-238)||(46954153-46954377)
chr3 (25-210)||(26701678-26701863)
chr3 (150-218)||(39464274-39464342)
chr3 (150-213)||(21789267-21789330)
chr3 (25-66)||(37152345-37152386)
chr3 (14-66)||(21789131-21789183)
[»] chr7 (3 HSPs)
chr7 (99-238)||(1448284-1448423)
chr7 (25-210)||(34361411-34361596)
chr7 (42-100)||(1447049-1447107)
[»] chr4 (1 HSPs)
chr4 (25-210)||(11052738-11052923)
[»] chr6 (1 HSPs)
chr6 (14-121)||(2961128-2961235)
[»] chr5 (1 HSPs)
chr5 (150-218)||(31468850-31468918)


Alignment Details
Target: chr1 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 50234756 - 50234519
Alignment:
Q  1 tgatatgaagctggaggatttggtttgctactcggactcgcttctctcaattaacctcattacaggtcaagcatcaatatatcactcctatgccgtttta 100  Q
    ||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50234756 tgatatggagcttgaggatttggtttgctactcggactcgcttctctcaattaacctcattacaggtcaagcatcaatatatcactcctatgccgtttta 50234657  T
Q  101 attcaagatataagggatctccttgttacgcacaatttcactgtccactattgcctccgtgaaggaaaccaatgcgctgatttcatggcaaaattgggag 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50234656 attcaagatataagggatctccttgttacgcacaatttcactgtccaccattgcctccgtgaaggaaaccaatgcgctgatttcatggcaaaattgggag 50234557  T
Q  201 cttcttctaatgaggagtacttcatccacccatcccct 238  Q
    |||||||||||||| ||||| |||||||||||||||||    
T  50234556 cttcttctaatgagtagtacctcatccacccatcccct 50234519  T

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Target: chr3 (Bit Score: 125; Significance: 2e-64; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 14 - 238
Target Start/End: Complemental strand, 46954377 - 46954153
Alignment:
Q  14 gaggatttggtttgctactcggactcgcttctctcaattaacctcattacaggtcaagcatcaatatatcactcctatgccgttttaattcaagatataa 113  Q
    ||||| ||||||||||||||||  ||||||||||||||||| |||||||| |||||||| ||||  |||||  ||||||||||||||||||||||||| |    
T  46954377 gaggaattggtttgctactcggtttcgcttctctcaattaatctcattacgggtcaagcttcaaagtatcatgcctatgccgttttaattcaagatatta 46954278  T
Q  114 gggatctccttgttacgcacaatttcactgtccactattgcctccgtgaaggaaaccaatgcgctgatttcatggcaaaattgggagcttcttctaatga 213  Q
     ||| ||| | ||| |||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||| |||||||| || |||||    
T  46954277 aggacctcttagtttcgcacaatttcactgtccagcattgcctccgtgaaggaaaccaatgcgctgatttcatggcaaaattaggagcttcgtcaaatga 46954178  T
Q  214 ggagtacttcatccacccatcccct 238  Q
     |||||| | |||||| ||||||||    
T  46954177 tgagtaccttatccactcatcccct 46954153  T

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Target: chr3; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 25 - 210
Target Start/End: Complemental strand, 26701863 - 26701678
Alignment:
Q  25 ttgctactcggactcgcttctctcaattaacctcattacaggtcaagcatcaatatatcactcctatgccgttttaattcaagatataagggatctcctt 124  Q
    ||||||||| ||||| |||||||| || || ||||||||||||||||| ||||  || ||  ||||||| ||| |||||||||| |||| |||  || |     
T  26701863 ttgctactctgactctcttctctccatcaatctcattacaggtcaagcttcaaagtaccatgcctatgcagttctaattcaagacataaaggacatctta 26701764  T
Q  125 gttacgcacaatttcactgtccactattgcctccgtgaaggaaaccaatgcgctgatttcatggcaaaattgggagcttcttctaa 210  Q
        ||||||||||| || ||||  |||||||| | |||||||||||||| |||||||||||||||||||| | |||||| |||||    
T  26701763 tcctcgcacaatttctctatccaacattgcctcagagaaggaaaccaatgtgctgatttcatggcaaaattcgaagcttcctctaa 26701678  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 150 - 218
Target Start/End: Original strand, 39464274 - 39464342
Alignment:
Q  150 attgcctccgtgaaggaaaccaatgcgctgatttcatggcaaaattgggagcttcttctaatgaggagt 218  Q
    |||| ||||||||||||||||||||||| |||| | |||| || ||||||||||| || ||||| ||||    
T  39464274 attgtctccgtgaaggaaaccaatgcgcggattacttggctaagttgggagcttcatcaaatgaagagt 39464342  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 150 - 213
Target Start/End: Original strand, 21789267 - 21789330
Alignment:
Q  150 attgcctccgtgaaggaaaccaatgcgctgatttcatggcaaaattgggagcttcttctaatga 213  Q
    |||| ||||||||||||||||||||||| |||| | |||| || ||||||||||| || |||||    
T  21789267 attgtctccgtgaaggaaaccaatgcgcggattacttggccaagttgggagcttcatcaaatga 21789330  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 25 - 66
Target Start/End: Original strand, 37152345 - 37152386
Alignment:
Q  25 ttgctactcggactcgcttctctcaattaacctcattacagg 66  Q
    ||||||||||||||| |||||||| || ||||||||||||||    
T  37152345 ttgctactcggactcccttctctccatcaacctcattacagg 37152386  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 66
Target Start/End: Original strand, 21789131 - 21789183
Alignment:
Q  14 gaggatttggtttgctactcggactcgcttctctcaattaacctcattacagg 66  Q
    ||||| |||| |||||||||||||||||||||||| || || || ||||||||    
T  21789131 gaggagttggcttgctactcggactcgcttctctccatcaatcttattacagg 21789183  T

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Target: chr7 (Bit Score: 112; Significance: 1e-56; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 99 - 238
Target Start/End: Original strand, 1448284 - 1448423
Alignment:
Q  99 taattcaagatataagggatctccttgttacgcacaatttcactgtccactattgcctccgtgaaggaaaccaatgcgctgatttcatggcaaaattggg 198  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| |||||||||||||||||| |||||||||||||||||||||    
T  1448284 taattcaagatataagggatctccttgttacgcacaatttcactgtccaccattacctctgtgaaggaaaccaatgcgttgatttcatggcaaaattggg 1448383  T
Q  199 agcttcttctaatgaggagtacttcatccacccatcccct 238  Q
    |||||| |||||||| |||||| |||||||||||||||||    
T  1448384 agcttcgtctaatgatgagtacctcatccacccatcccct 1448423  T

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Target: chr7; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 25 - 210
Target Start/End: Original strand, 34361411 - 34361596
Alignment:
Q  25 ttgctactcggactcgcttctctcaattaacctcattacaggtcaagcatcaatatatcactcctatgccgttttaattcaagatataagggatctcctt 124  Q
    ||||||||| ||||| |||||||| || || ||||||||||||||||| ||||  || ||  ||||||| ||| |||| ||||| |||| |||    |||    
T  34361411 ttgctactctgactctcttctctccatcaatctcattacaggtcaagcctcaaagtaccatgcctatgcagttctaatccaagacataaagga----ctt 34361506  T
Q  125 gtta----cgcacaatttcactgtccactattgcctccgtgaaggaaaccaatgcgctgatttcatggcaaaattgggagcttcttctaa 210  Q
     |||    ||||||||||| || ||||  |||||||| | |||||||||||||| |||||||||||||||||||| |||||||| |||||    
T  34361507 attatcctcgcacaatttctctatccaacattgcctcagggaaggaaaccaatgtgctgatttcatggcaaaattcggagcttcctctaa 34361596  T

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Target: chr7; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 42 - 100
Target Start/End: Original strand, 1447049 - 1447107
Alignment:
Q  42 ttctctcaattaacctcattacaggtcaagcatcaatatatcactcctatgccgtttta 100  Q
    ||||||||||||||||| |||| |||||||||||||||||||| |||||||||||||||    
T  1447049 ttctctcaattaacctcgttacgggtcaagcatcaatatatcattcctatgccgtttta 1447107  T

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Target: chr4 (Bit Score: 82; Significance: 8e-39; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 25 - 210
Target Start/End: Original strand, 11052738 - 11052923
Alignment:
Q  25 ttgctactcggactcgcttctctcaattaacctcattacaggtcaagcatcaatatatcactcctatgccgttttaattcaagatataagggatctcctt 124  Q
    ||||||||| ||||| |||||||| || || ||||||||||||||||| ||||  || ||  ||||||||||||||||||||||||||| ||| ||| |     
T  11052738 ttgctactctgactctcttctctccatcaatctcattacaggtcaagcttcaaagtaccatgcctatgccgttttaattcaagatataaaggacctctta 11052837  T
Q  125 gttacgcacaatttcactgtccactattgcctccgtgaaggaaaccaatgcgctgatttcatggcaaaattgggagcttcttctaa 210  Q
      | ||||||||||| || ||||  |||||||| | |||||||| |||||||||||||||||||||||||| ||||||||||||||    
T  11052838 tcttcgcacaatttctctatccaacattgcctcagagaaggaaaacaatgcgctgatttcatggcaaaattaggagcttcttctaa 11052923  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 14 - 121
Target Start/End: Original strand, 2961128 - 2961235
Alignment:
Q  14 gaggatttggtttgctactcggactcgcttctctcaattaacctcattacaggtcaagcatcaatatatcactcctatgccgttttaattcaagatataa 113  Q
    ||||| |||| |||||||||||||||||||||||| || || || ||||||||   ||| ||||  |||||  ||||||| || ||||| ||||||||||    
T  2961128 gaggagttggcttgctactcggactcgcttctctccatcaatcttattacaggaagagcttcaagctatcatgcctatgctgtcttaatacaagatataa 2961227  T
Q  114 gggatctc 121  Q
     |||||||    
T  2961228 aggatctc 2961235  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 150 - 218
Target Start/End: Original strand, 31468850 - 31468918
Alignment:
Q  150 attgcctccgtgaaggaaaccaatgcgctgatttcatggcaaaattgggagcttcttctaatgaggagt 218  Q
    |||| |||||||||||||| ||||| || |||| | ||||||||||||||||||| || ||||| ||||    
T  31468850 attgtctccgtgaaggaaatcaatgtgcggattacttggcaaaattgggagcttcatcgaatgaagagt 31468918  T

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