View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3715_high_5 (Length: 279)
Name: NF3715_high_5
Description: NF3715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3715_high_5 |
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Alignment Details
Target: chr8 (Bit Score: 190; Significance: 1e-103; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 18 - 277
Target Start/End: Complemental strand, 31502414 - 31502155
Alignment:
| Q |
18 |
gtctttgactttgatgaagacatagtcaagaatgacaaaatgatttgaaaaatagacaaattcattgctatgacttctttaaacactctaatcaaagaat |
117 |
Q |
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| T |
31502414 |
gtctttgactttgatgaagacatagtcaagaatgacaaaatgatttgaaaaatagacaaattcattgctatgacttctttaaacactctaatcaaagaat |
31502315 |
T |
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| Q |
118 |
aaaggtgttgatcaagttccaaatttgaagacatgccaaatttactatccatttgcttcaaagatgtgatcaacttgttgacannnnnnnnnnnnnnnnn |
217 |
Q |
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| T |
31502314 |
aaaggtgttgatcaagttccaaaattgaagacatgccaaatttactatccatttgcttcaaagatgtgatcaacttgttaacattttttttcatcttttt |
31502215 |
T |
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| Q |
218 |
ngtgaagaatttgtattgtgtcacacttctttcaacacttgaatcacctttgcttctcct |
277 |
Q |
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| T |
31502214 |
tgtgaagaatttgtattgtgtcacacttatttcaacacttgaatcaccttttcttctcct |
31502155 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 18 - 277
Target Start/End: Complemental strand, 31477050 - 31476791
Alignment:
| Q |
18 |
gtctttgactttgatgaagacatagtcaagaatgacaaaatgatttgaaaaatagacaaattcattgctatgacttctttaaacactctaatcaaagaat |
117 |
Q |
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| T |
31477050 |
gtctttgactttgatgaagacacattcaaaaatgacaaaatgaattgaaaaacagataagttcattactatgacttccctaaatactctaatcaaacaag |
31476951 |
T |
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| Q |
118 |
aaaggtgttgatcaagttccaaatttgaagacatgccaaatttactatccatttgcttcaaagatgtgatcaacttgttgacannnnnnnnnnnnnnnnn |
217 |
Q |
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| T |
31476950 |
aaaagtgatgatcaagttccaaaattgaagacatgccaaatttactattcatgtgcttcaaagatgtgatcaacttgttaacattttttttcatcttttt |
31476851 |
T |
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| Q |
218 |
ngtgaagaatttgtattgtgtcacacttctttcaacacttgaatcacctttgcttctcct |
277 |
Q |
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| T |
31476850 |
tgtgaagaatttgtattctgccacacttctttcaacacttgaatcaccttttcttctcct |
31476791 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 24 - 277
Target Start/End: Complemental strand, 31467198 - 31466945
Alignment:
| Q |
24 |
gactttgatgaagacatagtcaagaatgacaaaatgatttgaaaaatagacaaattcattgctatgacttctttaaacactctaatcaaagaataaaggt |
123 |
Q |
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|||||||||||||||| | |||| ||||||||||||| |||||||| |||||| ||||||| || ||||| ||||||||||||| | ||| |||||| |
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| T |
31467198 |
gactttgatgaagacacattcaaaaatgacaaaatgaattgaaaaacagacaagttcattgtaatcacttccctaaacactctaattatagagcaaaggt |
31467099 |
T |
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| Q |
124 |
gttgatcaagttccaaatttgaagacatgccaaatttactatccatttgcttcaaagatgtgatcaacttgttgacannnnnnnnnnnnnnnnnngtgaa |
223 |
Q |
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| T |
31467098 |
gatgatcaagttctaaaatttgggacaccccaaatttactatccatatgcttcaaacttgtgatcaacttggtgacatttttcttcatcagttttgtgaa |
31466999 |
T |
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| Q |
224 |
gaatttgtattgtgtcacacttctttcaacacttgaatcacctttgcttctcct |
277 |
Q |
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|||||||||| | |||||||||||||||||||||||||||||| |||||||| |
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| T |
31466998 |
aaatttgtattcttccacacttctttcaacacttgaatcaccttttcttctcct |
31466945 |
T |
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