View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3715_high_7 (Length: 220)
Name: NF3715_high_7
Description: NF3715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3715_high_7 |
 | |
|
| [»] scaffold0386 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 162; Significance: 1e-86; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 18 - 204
Target Start/End: Original strand, 3544856 - 3545042
Alignment:
| Q |
18 |
aaattctcatgatgaaattatttttatgcgttatttcattttagtgccacaaacttagagtacaaaaacataacttcaaggtacatgaaattaggaagnn |
117 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3544856 |
aaattctcatgatgaaattttttttatgcgttatttcattttagtgccacaaacttagagtacaaaaacataacttcaaggtacatgaaattaggaagaa |
3544955 |
T |
|
| Q |
118 |
nnnnnttattcagtgcatgcataaaagctaaaggacaacaactggatcattccagtataatgtatatggtacaactggatcattcat |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3544956 |
aaaaattattcagtgcatgcataaaagctaaaggacaacaactggatcattccagtataatgtatatggtacaactggatcattcat |
3545042 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 112
Target Start/End: Complemental strand, 5686283 - 5686243
Alignment:
| Q |
72 |
ttagagtacaaaaacataacttcaaggtacatgaaattagg |
112 |
Q |
| |
|
||||||||||||| |||||||||||||| || ||||||||| |
|
|
| T |
5686283 |
ttagagtacaaaatcataacttcaaggtccaggaaattagg |
5686243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 49 - 109
Target Start/End: Complemental strand, 12329028 - 12328968
Alignment:
| Q |
49 |
tatttcattttagtgccacaaacttagagtacaaaaacataacttcaaggtacatgaaatt |
109 |
Q |
| |
|
|||||||||||| || ||| | |||||||||||||| |||||||||| |||||||||||| |
|
|
| T |
12329028 |
tatttcattttaatgtcaccatcttagagtacaaaattataacttcaaagtacatgaaatt |
12328968 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 71 - 109
Target Start/End: Original strand, 12391425 - 12391463
Alignment:
| Q |
71 |
cttagagtacaaaaacataacttcaaggtacatgaaatt |
109 |
Q |
| |
|
||||||||||| ||| ||||||||||||||||||||||| |
|
|
| T |
12391425 |
cttagagtacacaaatataacttcaaggtacatgaaatt |
12391463 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0386 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0386
Description:
Target: scaffold0386; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 112
Target Start/End: Original strand, 10114 - 10154
Alignment:
| Q |
72 |
ttagagtacaaaaacataacttcaaggtacatgaaattagg |
112 |
Q |
| |
|
||||||||||||| |||||||||||||| || ||||||||| |
|
|
| T |
10114 |
ttagagtacaaaatcataacttcaaggtccaagaaattagg |
10154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University