View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3715_high_9 (Length: 206)

Name: NF3715_high_9
Description: NF3715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3715_high_9
NF3715_high_9
[»] chr2 (8 HSPs)
chr2 (14-188)||(14007786-14007962)
chr2 (125-188)||(1015768-1015831)
chr2 (125-188)||(17308734-17308797)
chr2 (125-182)||(45035208-45035265)
chr2 (125-189)||(45033406-45033470)
chr2 (140-188)||(33187188-33187236)
chr2 (125-180)||(30191635-30191690)
chr2 (131-180)||(3372458-3372507)
[»] chr4 (2 HSPs)
chr4 (131-188)||(28395559-28395616)
chr4 (124-188)||(4847687-4847751)
[»] chr5 (8 HSPs)
chr5 (125-188)||(10410845-10410908)
chr5 (125-188)||(8081549-8081612)
chr5 (125-188)||(25725808-25725871)
chr5 (125-188)||(25506938-25507001)
chr5 (136-189)||(10412417-10412470)
chr5 (125-188)||(25502025-25502088)
chr5 (124-185)||(6742592-6742653)
chr5 (131-188)||(40382763-40382820)
[»] chr6 (3 HSPs)
chr6 (124-188)||(15689081-15689145)
chr6 (153-189)||(9373599-9373635)
chr6 (132-172)||(34350341-34350381)
[»] chr1 (2 HSPs)
chr1 (124-188)||(44782182-44782246)
chr1 (125-188)||(46679749-46679812)
[»] chr8 (4 HSPs)
chr8 (125-188)||(30634229-30634292)
chr8 (125-189)||(1175159-1175223)
chr8 (138-188)||(35673345-35673395)
chr8 (125-188)||(35674837-35674900)
[»] chr3 (5 HSPs)
chr3 (125-188)||(41874557-41874620)
chr3 (125-173)||(4602355-4602403)
chr3 (125-173)||(27682253-27682301)
chr3 (125-173)||(28133782-28133830)
chr3 (131-188)||(26667004-26667061)
[»] chr7 (2 HSPs)
chr7 (132-188)||(29924677-29924733)
chr7 (132-188)||(21464559-21464615)


Alignment Details
Target: chr2 (Bit Score: 146; Significance: 4e-77; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 146; E-Value: 4e-77
Query Start/End: Original strand, 14 - 188
Target Start/End: Complemental strand, 14007962 - 14007786
Alignment:
14 attattctaaacatcta--gagaaactagaacacgttatttctctcaacatggtcatttttgtttgatatatcattcaagttgtagtttaactaattgat 111  Q
    |||||||||||||||||  |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
14007962 attattctaaacatctaaagagaaactagaacatgttatttctctcaacatggtcatttttgtttgatatatcattcaagttgtagtttaaccaattgat 14007863  T
112 agaagattgcatgtgttaggaatcaaaggattccatggttttaggtcaaatgcaatggaaagatggattgtgtaatt 188  Q
    |||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||    
14007862 agaagattgcatgtgttatgaatcaaaggattccatggttctaggtcaaatgcaatggaaagatggattgtctaatt 14007786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 125 - 188
Target Start/End: Complemental strand, 1015831 - 1015768
Alignment:
125 tgttaggaatcaaaggattccatggttttaggtcaaatgcaatggaaagatggattgtgtaatt 188  Q
    ||||| ||||||||||||||||||||| ||| ||||||||||||||||||| ||||||||||||    
1015831 tgttatgaatcaaaggattccatggttctagatcaaatgcaatggaaagatagattgtgtaatt 1015768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 125 - 188
Target Start/End: Complemental strand, 17308797 - 17308734
Alignment:
125 tgttaggaatcaaaggattccatggttttaggtcaaatgcaatggaaagatggattgtgtaatt 188  Q
    ||||| ||||||||||||||||| ||| ||| ||||||||||||||||||| ||||||||||||    
17308797 tgttatgaatcaaaggattccattgttctagatcaaatgcaatggaaagatagattgtgtaatt 17308734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 125 - 182
Target Start/End: Complemental strand, 45035265 - 45035208
Alignment:
125 tgttaggaatcaaaggattccatggttttaggtcaaatgcaatggaaagatggattgt 182  Q
    ||||| ||||||||||||||||||||| ||| ||||||||||||||||||| ||||||    
45035265 tgttatgaatcaaaggattccatggttctagatcaaatgcaatggaaagatagattgt 45035208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 125 - 189
Target Start/End: Complemental strand, 45033470 - 45033406
Alignment:
125 tgttaggaatcaaaggattccatggttttaggtcaaatgcaatggaaagatggattgtgtaattt 189  Q
    ||||| |||||||| |||||||||||| ||| ||||||||||||||||||| |||||| ||||||    
45033470 tgttatgaatcaaaagattccatggttctagatcaaatgcaatggaaagatagattgtataattt 45033406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 140 - 188
Target Start/End: Original strand, 33187188 - 33187236
Alignment:
140 gattccatggttttaggtcaaatgcaatggaaagatggattgtgtaatt 188  Q
    |||||||| ||| ||||||||||| ||||||||||| ||||||||||||    
33187188 gattccattgttctaggtcaaatgtaatggaaagatagattgtgtaatt 33187236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 125 - 180
Target Start/End: Complemental strand, 30191690 - 30191635
Alignment:
125 tgttaggaatcaaaggattccatggttttaggtcaaatgcaatggaaagatggatt 180  Q
    ||||| ||||||||||||||||||||| ||| |||||| ||||| |||||| ||||    
30191690 tgttatgaatcaaaggattccatggttctagatcaaatacaatgaaaagatagatt 30191635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 131 - 180
Target Start/End: Original strand, 3372458 - 3372507
Alignment:
131 gaatcaaaggattccatggttttaggtcaaatgcaatggaaagatggatt 180  Q
    |||||||| |||||||| ||| |||||||||| |||||||||||| ||||    
3372458 gaatcaaaagattccatagttctaggtcaaatacaatggaaagatagatt 3372507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 54; Significance: 3e-22; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 131 - 188
Target Start/End: Original strand, 28395559 - 28395616
Alignment:
131 gaatcaaaggattccatggttttaggtcaaatgcaatggaaagatggattgtgtaatt 188  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
28395559 gaatcaaaggattccatggttttaggtcaaatgcaatggaaagatagattgtgtaatt 28395616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 124 - 188
Target Start/End: Original strand, 4847687 - 4847751
Alignment:
124 gtgttaggaatcaaaggattccatggttttaggtcaaatgcaatggaaagatggattgtgtaatt 188  Q
    |||||| |||| |||||||||||||||| ||||||||||| ||||||||||| |||| |||||||    
4847687 gtgttatgaattaaaggattccatggttctaggtcaaatgtaatggaaagatagattttgtaatt 4847751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 52; Significance: 5e-21; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 125 - 188
Target Start/End: Complemental strand, 10410908 - 10410845
Alignment:
125 tgttaggaatcaaaggattccatggttttaggtcaaatgcaatggaaagatggattgtgtaatt 188  Q
    ||||| ||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||    
10410908 tgttatgaatcaaaggattccatggttctaggtcaaatgcaatggaaagatagattgtgtaatt 10410845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 125 - 188
Target Start/End: Complemental strand, 8081612 - 8081549
Alignment:
125 tgttaggaatcaaaggattccatggttttaggtcaaatgcaatggaaagatggattgtgtaatt 188  Q
    ||||| |||||||||| |||||||||| ||||||||||||||||||||||| ||||||||||||    
8081612 tgttatgaatcaaagggttccatggttctaggtcaaatgcaatggaaagatagattgtgtaatt 8081549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 125 - 188
Target Start/End: Original strand, 25725808 - 25725871
Alignment:
125 tgttaggaatcaaaggattccatggttttaggtcaaatgcaatggaaagatggattgtgtaatt 188  Q
    ||||| ||||||||||||||||||||| ||| ||||||||||||||||||| ||||||||||||    
25725808 tgttatgaatcaaaggattccatggttctagatcaaatgcaatggaaagatagattgtgtaatt 25725871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 125 - 188
Target Start/End: Original strand, 25506938 - 25507001
Alignment:
125 tgttaggaatcaaaggattccatggttttaggtcaaatgcaatggaaagatggattgtgtaatt 188  Q
    ||||| |||| |||||||||||||||||||| ||||||||||||||||||| |||| |||||||    
25506938 tgttatgaataaaaggattccatggttttagatcaaatgcaatggaaagatagattatgtaatt 25507001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 136 - 189
Target Start/End: Complemental strand, 10412470 - 10412417
Alignment:
136 aaaggattccatggttttaggtcaaatgcaatggaaagatggattgtgtaattt 189  Q
    |||||||| ||||||||||||||||||||||| ||||||| |||||||||||||    
10412470 aaaggatttcatggttttaggtcaaatgcaatcgaaagatagattgtgtaattt 10412417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 125 - 188
Target Start/End: Original strand, 25502025 - 25502088
Alignment:
125 tgttaggaatcaaaggattccatggttttaggtcaaatgcaatggaaagatggattgtgtaatt 188  Q
    ||||| |||||| |||||||||||||| ||| |||||||||||||||| || ||||||||||||    
25502025 tgttatgaatcagaggattccatggttctagatcaaatgcaatggaaatatagattgtgtaatt 25502088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 124 - 185
Target Start/End: Complemental strand, 6742653 - 6742592
Alignment:
124 gtgttaggaatcaaaggattccatggttttaggtcaaatgcaatggaaagatggattgtgta 185  Q
    |||||| |||||||| |||||||| ||| ||| ||||||||||||||||||| |||||||||    
6742653 gtgttatgaatcaaacgattccatagttctagatcaaatgcaatggaaagatagattgtgta 6742592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 131 - 188
Target Start/End: Original strand, 40382763 - 40382820
Alignment:
131 gaatcaaaggattccatggttttaggtcaaatgcaatggaaagatggattgtgtaatt 188  Q
    ||||||||||||| ||| ||| |||||||||||||||||||||||  |||||||||||    
40382763 gaatcaaaggattacattgttctaggtcaaatgcaatggaaagataaattgtgtaatt 40382820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 49; Significance: 3e-19; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 124 - 188
Target Start/End: Complemental strand, 15689145 - 15689081
Alignment:
124 gtgttaggaatcaaaggattccatggttttaggtcaaatgcaatggaaagatggattgtgtaatt 188  Q
    |||||| |||||||||||||||||| || ||||||||||||||||||||||| ||||||||||||    
15689145 gtgttatgaatcaaaggattccatgattctaggtcaaatgcaatggaaagatagattgtgtaatt 15689081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 189
Target Start/End: Original strand, 9373599 - 9373635
Alignment:
153 taggtcaaatgcaatggaaagatggattgtgtaattt 189  Q
    ||||||||||||||||||||||| || ||||||||||    
9373599 taggtcaaatgcaatggaaagatagaatgtgtaattt 9373635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 172
Target Start/End: Original strand, 34350341 - 34350381
Alignment:
132 aatcaaaggattccatggttttaggtcaaatgcaatggaaa 172  Q
    |||||||||||||||||||| |||||||||| ||| |||||    
34350341 aatcaaaggattccatggttctaggtcaaatacaacggaaa 34350381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 49; Significance: 3e-19; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 124 - 188
Target Start/End: Original strand, 44782182 - 44782246
Alignment:
124 gtgttaggaatcaaaggattccatggttttaggtcaaatgcaatggaaagatggattgtgtaatt 188  Q
    |||||| |||| |||||||||||||||| ||||||||||||||||||||||| ||||||||||||    
44782182 gtgttatgaattaaaggattccatggttctaggtcaaatgcaatggaaagatagattgtgtaatt 44782246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 125 - 188
Target Start/End: Complemental strand, 46679812 - 46679749
Alignment:
125 tgttaggaatcaaaggattccatggttttaggtcaaatgcaatggaaagatggattgtgtaatt 188  Q
    ||||| ||||||||||||||||||||| ||| ||||||||||||||||||| ||||||||||||    
46679812 tgttatgaatcaaaggattccatggttctagatcaaatgcaatggaaagatagattgtgtaatt 46679749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 48; Significance: 1e-18; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 125 - 188
Target Start/End: Original strand, 30634229 - 30634292
Alignment:
125 tgttaggaatcaaaggattccatggttttaggtcaaatgcaatggaaagatggattgtgtaatt 188  Q
    ||||| |||||||||||||| |||||||||||||||||||||||||||||| |||| |||||||    
30634229 tgttatgaatcaaaggattctatggttttaggtcaaatgcaatggaaagatagattctgtaatt 30634292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 125 - 189
Target Start/End: Complemental strand, 1175223 - 1175159
Alignment:
125 tgttaggaatcaaaggattccatggttttaggtcaaatgcaatggaaagatggattgtgtaattt 189  Q
    ||||| |||| ||||||||| |||||| ||||||||||| |||| |||||| |||||||||||||    
1175223 tgttatgaattaaaggattctatggttctaggtcaaatgtaatgaaaagatagattgtgtaattt 1175159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 138 - 188
Target Start/End: Original strand, 35673345 - 35673395
Alignment:
138 aggattccatggttttaggtcaaatgcaatggaaagatggattgtgtaatt 188  Q
    |||||||||||||| || |||||||||||||||||||| |||||| |||||    
35673345 aggattccatggttctaagtcaaatgcaatggaaagatagattgtataatt 35673395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 125 - 188
Target Start/End: Original strand, 35674837 - 35674900
Alignment:
125 tgttaggaatcaaaggattccatggttttaggtcaaatgcaatggaaagatggattgtgtaatt 188  Q
    ||||| |||||  |||||| ||||||| || |||||||||||||||||| | ||||||||||||    
35674837 tgttacgaatctgaggattgcatggttctaagtcaaatgcaatggaaaggtagattgtgtaatt 35674900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 48; Significance: 1e-18; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 125 - 188
Target Start/End: Complemental strand, 41874620 - 41874557
Alignment:
125 tgttaggaatcaaaggattccatggttttaggtcaaatgcaatggaaagatggattgtgtaatt 188  Q
    ||||| ||||||||||||||||||||| ||||||||||||||||||||||| |||| |||||||    
41874620 tgttatgaatcaaaggattccatggttctaggtcaaatgcaatggaaagatagattttgtaatt 41874557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 125 - 173
Target Start/End: Complemental strand, 4602403 - 4602355
Alignment:
125 tgttaggaatcaaaggattccatggttttaggtcaaatgcaatggaaag 173  Q
    ||||| ||||||||||||||||||||| ||| |||||||||||||||||    
4602403 tgttatgaatcaaaggattccatggttctagatcaaatgcaatggaaag 4602355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 125 - 173
Target Start/End: Complemental strand, 27682301 - 27682253
Alignment:
125 tgttaggaatcaaaggattccatggttttaggtcaaatgcaatggaaag 173  Q
    ||||| ||||||||||||||||||||| ||| |||||||||||||||||    
27682301 tgttatgaatcaaaggattccatggttctagatcaaatgcaatggaaag 27682253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 125 - 173
Target Start/End: Complemental strand, 28133830 - 28133782
Alignment:
125 tgttaggaatcaaaggattccatggttttaggtcaaatgcaatggaaag 173  Q
    ||||| ||||||||||||||||||||| ||| |||||||||||||||||    
28133830 tgttatgaatcaaaggattccatggttctagatcaaatgcaatggaaag 28133782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 131 - 188
Target Start/End: Original strand, 26667004 - 26667061
Alignment:
131 gaatcaaaggattccatggttttaggtcaaatgcaatggaaagatggattgtgtaatt 188  Q
    ||||||||||||| ||||||| ||| |||||||| |||||||| | ||||||||||||    
26667004 gaatcaaaggatttcatggttctagatcaaatgcgatggaaaggtagattgtgtaatt 26667061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 8e-17; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 132 - 188
Target Start/End: Complemental strand, 29924733 - 29924677
Alignment:
132 aatcaaaggattccatggttttaggtcaaatgcaatggaaagatggattgtgtaatt 188  Q
    |||||||||||||||| ||| ||||||||||||||||||||||| ||||||||||||    
29924733 aatcaaaggattccatagttctaggtcaaatgcaatggaaagatagattgtgtaatt 29924677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 132 - 188
Target Start/End: Complemental strand, 21464615 - 21464559
Alignment:
132 aatcaaaggattccatggttttaggtcaaatgcaatggaaagatggattgtgtaatt 188  Q
    |||||||| ||||||||||| ||| ||||||||||||||||||| ||||||||||||    
21464615 aatcaaagaattccatggttctagatcaaatgcaatggaaagatagattgtgtaatt 21464559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University