View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3715_low_1 (Length: 462)
Name: NF3715_low_1
Description: NF3715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3715_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 432; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 432; E-Value: 0
Query Start/End: Original strand, 1 - 448
Target Start/End: Complemental strand, 27254879 - 27254432
Alignment:
| Q |
1 |
aggaagattttgatttaaaggagacaacaccaaacatcaatgctggaagagtgataagtggtgataggcttccaataacatttgatcttgttgaacaaat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27254879 |
aggaagattttgatttaaaggagacaacaccaaacatcaatgctggaagagtgataagtggtgataggcttccaataacatttgatcttgttgaacaaat |
27254780 |
T |
|
| Q |
101 |
gaagtttctttttgcaagggtagtgagagccaaagacttgccagaaaccggtaagtctgatacttgcaacacttttgtggaagttaaacttggaagtttc |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
27254779 |
gaagtttctttttgcaagggtagtgagagccaaagacttgccagaaaccggtaagtctgatacttgcaacccttttgtggaagttaaacttggaagtttc |
27254680 |
T |
|
| Q |
201 |
gtagggacaacaagggtctttgagaaaacctcaaaccccgagtggaaccaagtttttgctttttctaaagagaggattcaagaacaagttttggagattg |
300 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27254679 |
gtagggacaacaagggtctttgagaaaatctcaaaccctgagtggaaccaagtttttgctttttctaaagagaggattcaagaacaagttttggagattg |
27254580 |
T |
|
| Q |
301 |
ttgtgaaggaaaaagatcccgttgctgatcaccctgatgtcattggtcgagtagcattcagaatttctgatattcctatgagggttcctcctgatagtcc |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
27254579 |
ttgtgaaggaaaaagatcccgttgctgatcaccctgatgtcattggtcgagtagcattcacaatttctgatattcctatgagggttcctcctgatagtcc |
27254480 |
T |
|
| Q |
401 |
tttagcaccacaatggtataagcttgagggtcaaaatatggtgaagct |
448 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
27254479 |
tttagcaccacaatggtataagcttgagggtcaaaatatggtgaagct |
27254432 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 1 - 448
Target Start/End: Complemental strand, 21199037 - 21198590
Alignment:
| Q |
1 |
aggaagattttgatttaaaggagacaacaccaaacatcaatgctggaagagtgataagtggtgataggcttccaataacatttgatcttgttgaacaaat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
21199037 |
aggaagattttgatttaaaggagacaacaccaaacatcaatgctggaagagtgataagtggtgataggcttccaataacatttgatcttgttgaacaaat |
21198938 |
T |
|
| Q |
101 |
gaagtttctttttgcaagggtagtgagagccaaagacttgccagaaaccggtaagtctgatacttgcaacacttttgtggaagttaaacttggaagtttc |
200 |
Q |
| |
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||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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|
| T |
21198937 |
gaagtttctttttgcaagggtagtgagagccaatgacttaccagaaaccggtaagtctgatacttgcaacccttttgtggaagttaaacttggaagtttc |
21198838 |
T |
|
| Q |
201 |
gtagggacaacaagggtctttgagaaaacctcaaaccccgagtggaaccaagtttttgctttttctaaagagaggattcaagaacaagttttggagattg |
300 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
21198837 |
gtagggacaacaagggtctttgagaaaatctcaaaccctgagtggaaccaagtttttgctttttctaaagagaggattcaagaacaagttttggagattg |
21198738 |
T |
|
| Q |
301 |
ttgtgaaggaaaaagatcccgttgctgatcaccctgatgtcattggtcgagtagcattcagaatttctgatattcctatgagggttcctcctgatagtcc |
400 |
Q |
| |
|
||||||||||||||||||||||||||||| | ||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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|
| T |
21198737 |
ttgtgaaggaaaaagatcccgttgctgattatccttatgtcattggtcgagtagcattcacaatttctgatattcctatgagggttcctcctgatagtcc |
21198638 |
T |
|
| Q |
401 |
tttagcaccacaatggtataagcttgagggtcaaaatatggtgaagct |
448 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21198637 |
tttagcaccacaatggtataagcttgagggtcaaaatatggtgaagct |
21198590 |
T |
|
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