View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3715_low_11 (Length: 214)

Name: NF3715_low_11
Description: NF3715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3715_low_11
NF3715_low_11
[»] chr1 (3 HSPs)
chr1 (17-198)||(44782187-44782368)
chr1 (27-198)||(46679637-46679808)
chr1 (98-161)||(33773206-33773269)
[»] chr8 (6 HSPs)
chr8 (17-198)||(30634233-30634414)
chr8 (17-198)||(1175035-1175219)
chr8 (92-191)||(1173508-1173607)
chr8 (132-198)||(35673336-35673402)
chr8 (124-181)||(35674858-35674915)
chr8 (98-163)||(44687154-44687219)
[»] chr5 (8 HSPs)
chr5 (17-198)||(25725812-25725993)
chr5 (17-198)||(40382761-40382942)
chr5 (27-198)||(10410734-10410904)
chr5 (27-198)||(25502029-25502199)
chr5 (27-198)||(25506942-25507113)
chr5 (98-198)||(8081508-8081608)
chr5 (27-195)||(10412307-10412474)
chr5 (132-198)||(6742582-6742648)
[»] chr4 (5 HSPs)
chr4 (30-198)||(4847692-4847860)
chr4 (27-198)||(28395557-28395731)
chr4 (27-144)||(25054273-25054389)
chr4 (17-79)||(11809887-11809949)
chr4 (98-163)||(8005909-8005974)
[»] chr2 (12 HSPs)
chr2 (27-198)||(1015657-1015827)
chr2 (45-187)||(33187188-33187330)
chr2 (17-198)||(45035081-45035261)
chr2 (17-198)||(45033286-45033466)
chr2 (27-198)||(17308630-17308793)
chr2 (27-198)||(30191518-30191686)
chr2 (131-198)||(14007778-14007845)
chr2 (98-162)||(25302815-25302879)
chr2 (100-163)||(41602457-41602520)
chr2 (98-163)||(25306810-25306875)
chr2 (27-73)||(4399574-4399620)
chr2 (133-198)||(3372456-3372521)
[»] chr6 (5 HSPs)
chr6 (27-191)||(34350345-34350509)
chr6 (45-198)||(15688987-15689140)
chr6 (27-106)||(24544664-24544742)
chr6 (98-174)||(9373599-9373675)
chr6 (33-78)||(31528826-31528873)
[»] chr3 (6 HSPs)
chr3 (27-198)||(28133655-28133826)
chr3 (27-198)||(4602229-4602399)
chr3 (101-198)||(41874519-41874616)
chr3 (45-198)||(4609059-4609211)
chr3 (31-198)||(27682131-27682297)
chr3 (98-163)||(35244170-35244235)
[»] chr7 (4 HSPs)
chr7 (45-191)||(29924590-29924729)
chr7 (27-191)||(21464441-21464611)
chr7 (98-163)||(30511162-30511227)
chr7 (27-59)||(965023-965055)
[»] scaffold0570 (1 HSPs)
scaffold0570 (45-125)||(3010-3094)


Alignment Details
Target: chr1 (Bit Score: 158; Significance: 3e-84; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 17 - 198
Target Start/End: Complemental strand, 44782368 - 44782187
Alignment:
Q  17 agttatctatgtagaaagttagttggggagttagttactccaagtcactataaataagctacacctatgcattatttcattatcttttatacaattgttt 116  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||    
T  44782368 agttatctatgtagaaagttagttagggagttagttactccaagtcactataaataagctacacctatgtactatttcattatcttttatacaattgttt 44782269  T
Q  117 cttagtaatgacttctagagagaattacgcaatctatctttccattgcatttgacctagaaccatagaatcctttaattcat 198  Q
    ||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  44782268 cttagtaatgactcctagagagaattacacaatctatctttccattgcatttgacctagaaccatggaatcctttaattcat 44782187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 27 - 198
Target Start/End: Original strand, 46679637 - 46679808
Alignment:
Q  27 gtagaaagttagttggggagttagttactccaagtcactataaataagctacacctatgcattatttcattatcttttatacaattgtttcttagtaatg 126  Q
    ||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||| | || ||||| |||||||||||||||||||||| ||||||    
T  46679637 gtagaaaattagttagggagttagttactccaagtcactataaataagctacacctatgtactacttcatcatcttttatacaattgtttcttggtaatg 46679736  T
Q  127 acttctagagagaattacgcaatctatctttccattgcatttgacctagaaccatagaatcctttaattcat 198  Q
    ||| |||||||||||||| ||||||||||||||||||||||||| |||||||||| ||||||||| ||||||    
T  46679737 actcctagagagaattacacaatctatctttccattgcatttgatctagaaccatggaatcctttgattcat 46679808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 98 - 161
Target Start/End: Original strand, 33773206 - 33773269
Alignment:
Q  98 atcttttatacaattgtttcttagtaatgacttctagagagaattacgcaatctatctttccat 161  Q
    ||||||||||||||||||| ||||| |||||| |||||||| |||| ||| |||||||||||||    
T  33773206 atcttttatacaattgttttttagtgatgactcctagagagtattatgcattctatctttccat 33773269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 146; Significance: 4e-77; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 146; E-Value: 4e-77
Query Start/End: Original strand, 17 - 198
Target Start/End: Complemental strand, 30634414 - 30634233
Alignment:
Q  17 agttatctatgtagaaagttagttggggagttagttactccaagtcactataaataagctacacctatgcattatttcattatcttttatacaattgttt 116  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||    
T  30634414 agttatctatgtagaaagttagttagggagttagttactccaagtcactataaataagctacacctatgtactatttcattatcttttatacaattgttt 30634315  T
Q  117 cttagtaatgacttctagagagaattacgcaatctatctttccattgcatttgacctagaaccatagaatcctttaattcat 198  Q
    |||||||||||||  |||||||||||||  |||||||||||||||||||||||||||| |||||||||||||||| ||||||    
T  30634314 cttagtaatgactcatagagagaattacagaatctatctttccattgcatttgacctaaaaccatagaatcctttgattcat 30634233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 127; E-Value: 9e-66
Query Start/End: Original strand, 17 - 198
Target Start/End: Original strand, 1175035 - 1175219
Alignment:
Q  17 agttatctatgtagaaagttagttggggagttagttactccaagtcactataaataagctacacctatgcattatttcattatcttttatacaattgttt 116  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||| | ||||||||||||||||||||||||||||    
T  1175035 agttatctatgtagaaagttaggtggggagttagttactccaagtcactataaataagttacacctatgtactatttcattatcttttatacaattgttt 1175134  T
Q  117 ct---tagtaatgacttctagagagaattacgcaatctatctttccattgcatttgacctagaaccatagaatcctttaattcat 198  Q
    ||   || |||||||| ||||| | |||||| |||||||||||| |||| |||||||||||||||||||||||||||||||||||    
T  1175135 cttggtaataatgactcctagaaaaaattacacaatctatcttttcattacatttgacctagaaccatagaatcctttaattcat 1175219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 92 - 191
Target Start/End: Original strand, 1173508 - 1173607
Alignment:
Q  92 ttcattatcttttatacaattgtttcttagtaatgacttctagagagaattacgcaatctatctttccattgcatttgacctagaaccatagaatccttt 191  Q
    |||||||||||||||||||||||||||| ||||||||| |||||||||||||  |||||||| ||| |||||||||||| ||||||  || |||||||||    
T  1173508 ttcattatcttttatacaattgtttcttggtaatgactcctagagagaattatacaatctattttttcattgcatttgatctagaattatggaatccttt 1173607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 132 - 198
Target Start/End: Complemental strand, 35673402 - 35673336
Alignment:
Q  132 tagagagaattacgcaatctatctttccattgcatttgacctagaaccatagaatcctttaattcat 198  Q
    ||||||||||||  |||||||||||||||||||||||||| ||||||||| ||||||| || |||||    
T  35673402 tagagagaattatacaatctatctttccattgcatttgacttagaaccatggaatcctctatttcat 35673336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 124 - 181
Target Start/End: Complemental strand, 35674915 - 35674858
Alignment:
Q  124 atgacttctagagagaattacgcaatctatctttccattgcatttgacctagaaccat 181  Q
    |||||| |||||||||||||| ||||||| |||||||||||||||||| |||||||||    
T  35674915 atgactcctagagagaattacacaatctacctttccattgcatttgacttagaaccat 35674858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 98 - 163
Target Start/End: Original strand, 44687154 - 44687219
Alignment:
Q  98 atcttttatacaattgtttcttagtaatgacttctagagagaattacgcaatctatctttccattg 163  Q
    ||||||||||||||||||||||||| |||| | |||||||| |||| ||| |||||||||||||||    
T  44687154 atcttttatacaattgtttcttagtgatgattcctagagagcattatgcattctatctttccattg 44687219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 138; Significance: 3e-72; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 17 - 198
Target Start/End: Complemental strand, 25725993 - 25725812
Alignment:
Q  17 agttatctatgtagaaagttagttggggagttagttactccaagtcactataaataagctacacctatgcattatttcattatcttttatacaattgttt 116  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||| | |||||||||||||||||||| |||||||    
T  25725993 agttatctatgtagaaagttagttagggagttagttactccaagtcactataaataagttacacctatgtactatttcattatcttttatacgattgttt 25725894  T
Q  117 cttagtaatgacttctagagagaattacgcaatctatctttccattgcatttgacctagaaccatagaatcctttaattcat 198  Q
    ||| ||||||||| |||||||||||||| ||||||||||||||||||||||||| |||||||||| ||||||||| ||||||    
T  25725893 cttggtaatgactcctagagagaattacacaatctatctttccattgcatttgatctagaaccatggaatcctttgattcat 25725812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 17 - 198
Target Start/End: Complemental strand, 40382942 - 40382761
Alignment:
Q  17 agttatctatgtagaaagttagttggggagttagttactccaagtcactataaataagctacacctatgcattatttcattatcttttatacaattgttt 116  Q
    |||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||  | |||||||||||||||| |||||||||||    
T  40382942 agttatctatgtagaaagttagttagggagttaggtactccaagtcactataaataagctacacctatatactatttcattatcttttttacaattgttt 40382843  T
Q  117 cttagtaatgacttctagagagaattacgcaatctatctttccattgcatttgacctagaaccatagaatcctttaattcat 198  Q
    ||||||||||| | |||||||||||||| |||| |||||||||||||||||||||||||||| ||  |||||||| ||||||    
T  40382842 cttagtaatgattcctagagagaattacacaatttatctttccattgcatttgacctagaacaatgtaatcctttgattcat 40382761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 27 - 198
Target Start/End: Original strand, 10410734 - 10410904
Alignment:
Q  27 gtagaaagttagttggggagttagttactccaagtcactataaataagctacacctatgcattatttcattatcttttatacaattgtttcttagtaatg 126  Q
    |||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||| | |||||||  ||||||||| || |||  |||| |  |||    
T  10410734 gtagaaagttagttagggagttagttactccaaatcactataaataagctacacctatgtactatttcac-atcttttattcatttgcatctttgggatg 10410832  T
Q  127 acttctagagagaattacgcaatctatctttccattgcatttgacctagaaccatagaatcctttaattcat 198  Q
    ||| |||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| ||||||    
T  10410833 actcctagagagaattacacaatctatctttccattgcatttgacctagaaccatggaatcctttgattcat 10410904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 27 - 198
Target Start/End: Complemental strand, 25502199 - 25502029
Alignment:
Q  27 gtagaaagttagttggggagttagttactccaagtcactataaataagctacacctatgcattatttcattatcttttatacaattgtttcttagtaatg 126  Q
    |||||||||||||| |||||||||||||||||| |||||||||||||| |||| ||||| | |||| ||| ||||||||||||||||||||||  |||||    
T  25502199 gtagaaagttagttagggagttagttactccaattcactataaataagttacatctatgtactattccat-atcttttatacaattgtttcttgataatg 25502101  T
Q  127 acttctagagagaattacgcaatctatctttccattgcatttgacctagaaccatagaatcctttaattcat 198  Q
    ||| |||||||||||||| |||||||| |||||||||||||||| |||||||||| ||||||| | ||||||    
T  25502100 actcctagagagaattacacaatctatatttccattgcatttgatctagaaccatggaatcctctgattcat 25502029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 89; E-Value: 4e-43
Query Start/End: Original strand, 27 - 198
Target Start/End: Complemental strand, 25507113 - 25506942
Alignment:
Q  27 gtagaaagttagttggggagtt-agttactccaagtcactataaataagctacacctatgcattatttcattatcttttatacaattgtttcttagtaat 125  Q
    ||||||||||| || ||||||| ||||||||||| ||||||||||||||||||||||||| | |||| ||| || ||||||||||||||||||| |||||    
T  25507113 gtagaaagttacttagggagtttagttactccaattcactataaataagctacacctatgtactattccat-attttttatacaattgtttctttgtaat 25507015  T
Q  126 gacttctagagagaattacgcaatctatctttccattgcatttgacctagaaccatagaatcctttaattcat 198  Q
    || | | ||||||||||||  |||||||||||||||||||||||| ||| |||||| ||||||||| ||||||    
T  25507014 gaatcccagagagaattacataatctatctttccattgcatttgatctaaaaccatggaatccttttattcat 25506942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 98 - 198
Target Start/End: Original strand, 8081508 - 8081608
Alignment:
Q  98 atcttttatacaattgtttcttagtaatgacttctagagagaattacgcaatctatctttccattgcatttgacctagaaccatagaatcctttaattca 197  Q
    |||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||| ||| ||||| |||||    
T  8081508 atcttttatacaattgtttcttagtaatgactcctagagagaattacacaatctatctttccattgcatttgacctagaaccatggaaccctttgattca 8081607  T
Q  198 t 198  Q
    |    
T  8081608 t 8081608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 27 - 195
Target Start/End: Original strand, 10412307 - 10412474
Alignment:
Q  27 gtagaaagttagttggggagttagttactccaagtcactataaataagctacacctatgcattatttcattatcttttatacaattgtttcttagtaatg 126  Q
    |||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||| | ||||||| |||||||||| || |||  |||| || ||     
T  10412307 gtagaaagttagttagggagttagttactccaaatcactataaataagctacacctatgtactatttca-tatcttttattcatttgcatctttgtgata 10412405  T
Q  127 acttctagagagaattacgcaatctatctttccattgcatttgacctagaaccatagaatcctttaatt 195  Q
    | |  |||||| |||||| ||||||||||||| ||||||||||||||| ||||||  ||||||||||||    
T  10412406 attcttagagaaaattacacaatctatctttcgattgcatttgacctaaaaccatgaaatcctttaatt 10412474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 132 - 198
Target Start/End: Original strand, 6742582 - 6742648
Alignment:
Q  132 tagagagaattacgcaatctatctttccattgcatttgacctagaaccatagaatcctttaattcat 198  Q
    ||||||||| ||| ||||||||||||||||||||||||| ||||||| || ||||| ||| ||||||    
T  6742582 tagagagaaatacacaatctatctttccattgcatttgatctagaactatggaatcgtttgattcat 6742648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 117; Significance: 9e-60; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 30 - 198
Target Start/End: Complemental strand, 4847860 - 4847692
Alignment:
Q  30 gaaagttagttggggagttagttactccaagtcactataaataagctacacctatgcattatttcattatcttttatacaattgtttcttagtaatgact 129  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| | ||| ||| |||||| |||||||||||||||| |||||||||    
T  4847860 gaaagttagttagggagttagttactccaagtcactataaataagctacatctatgtactatatcactatcttatatacaattgtttcttggtaatgact 4847761  T
Q  130 tctagagagaattacgcaatctatctttccattgcatttgacctagaaccatagaatcctttaattcat 198  Q
    |||| ||||||||||  |||||||||||||||| |||||||||||||||||| ||||||||||||||||    
T  4847760 tctatagagaattacaaaatctatctttccattacatttgacctagaaccatggaatcctttaattcat 4847692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 27 - 198
Target Start/End: Complemental strand, 28395731 - 28395557
Alignment:
Q  27 gtagaaagttagttggggagttagttactccaagtcactataaataagctacacctatgcattatttcattatcttttatacaattgtttct----tagt 122  Q
    ||||||| |||||| |||||||| ||||||||| |||||||||||||||||||||  || | |||||||| ||||||||| || || | |||    | ||    
T  28395731 gtagaaaattagttagggagttatttactccaaatcactataaataagctacaccactgtactatttcat-atcttttattcatttctatctatctttgt 28395633  T
Q  123 aatgacttctagagagaattacgcaatctatctttccattgcatttgacctagaaccatagaatcctttaattcat 198  Q
     |||||| |||||||||||||| ||||||||||||||||||||||||||||| |||||| ||||||||| ||||||    
T  28395632 gatgactcctagagagaattacacaatctatctttccattgcatttgacctaaaaccatggaatcctttgattcat 28395557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 27 - 144
Target Start/End: Original strand, 25054273 - 25054389
Alignment:
Q  27 gtagaaagttagttggggagttagttactccaagtcactataaataagctacacctatgcattatttcattatcttttatacaattgtttcttagtaatg 126  Q
    |||||| ||||||| |||||||||||||||||| ||||||||||||||||||||||||| | |||||||  ||||||||| ||||||  |||| || |||    
T  25054273 gtagaacgttagttagggagttagttactccaaatcactataaataagctacacctatgtactatttca-catcttttattcaattgcatctttgtgatg 25054371  T
Q  127 acttctagagagaattac 144  Q
    ||||| ||||||||||||    
T  25054372 acttccagagagaattac 25054389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 17 - 79
Target Start/End: Complemental strand, 11809949 - 11809887
Alignment:
Q  17 agttatctatgtagaaagttagttggggagttagttactccaagtcactataaataagctaca 79  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||| || |||||    
T  11809949 agttatctatgtagaaagttagttagggagttagttactccaagtcactataaacaaactaca 11809887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 98 - 163
Target Start/End: Original strand, 8005909 - 8005974
Alignment:
Q  98 atcttttatacaattgtttcttagtaatgacttctagagagaattacgcaatctatctttccattg 163  Q
    ||||||||| |||||||||||| || |||||| |||||||| |||| ||| |||||||||||||||    
T  8005909 atcttttattcaattgtttctttgtgatgactcctagagagcattatgcattctatctttccattg 8005974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 104; Significance: 5e-52; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 27 - 198
Target Start/End: Original strand, 1015657 - 1015827
Alignment:
Q  27 gtagaaagttagttggggagttagttactccaagtcactataaataagctacacctatgcattatttcattatcttttatacaattgtttcttagtaatg 126  Q
    ||||||||||||||  ||||||||||||||||| ||||||||||||||| ||||||||| | |||| ||| |||||||||||||||||||||| |||| |    
T  1015657 gtagaaagttagttacggagttagttactccaaatcactataaataagccacacctatgtactattccat-atcttttatacaattgtttcttggtaacg 1015755  T
Q  127 acttctagagagaattacgcaatctatctttccattgcatttgacctagaaccatagaatcctttaattcat 198  Q
    ||| | |||||||||||| ||||||||||||||||||||||||| |||||||||| ||||||||| ||||||    
T  1015756 actccaagagagaattacacaatctatctttccattgcatttgatctagaaccatggaatcctttgattcat 1015827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 45 - 187
Target Start/End: Complemental strand, 33187330 - 33187188
Alignment:
Q  45 agttagttactccaagtcactataaataagctacacctatgcattatttcattatcttttatacaattgtttcttagtaatgacttctagagagaattac 144  Q
    ||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| |||||||||  |||||| ||||||    
T  33187330 agttagttactccaagtcactataaataagctacacctatgtactatttcattatcttttatacaattgtttcttggtaatgactcatagagataattac 33187231  T
Q  145 gcaatctatctttccattgcatttgacctagaaccatagaatc 187  Q
     ||||||||||||||||| ||||||||||||||| || |||||    
T  33187230 acaatctatctttccattacatttgacctagaacaatggaatc 33187188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 17 - 198
Target Start/End: Original strand, 45035081 - 45035261
Alignment:
Q  17 agttatctatgtagaaagttagttggggagttagttactccaagtcactataaataagctacacctatgcattatttcattatcttttatacaattgttt 116  Q
    |||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||| | |||||||  ||||||||| || |||  |    
T  45035081 agttatctatgtagaaagttagttagggagttagttactccaaatcactataaataagctacacctatgtaatatttca-aatcttttattcatttgcat 45035179  T
Q  117 cttagtaatgacttctagagagaattacgcaatctatctttccattgcatttgacctagaaccatagaatcctttaattcat 198  Q
    ||| || |||||| |||||||||| ||  ||||||||||||||||||||||||| |||||||||| ||||||||| ||||||    
T  45035180 ctttgtgatgactcctagagagaactatacaatctatctttccattgcatttgatctagaaccatggaatcctttgattcat 45035261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 17 - 198
Target Start/End: Original strand, 45033286 - 45033466
Alignment:
Q  17 agttatctatgtagaaagttagttggggagttagttactccaagtcactataaataagctacacctatgcattatttcattatcttttatacaattgttt 116  Q
    |||||||||||||||||||||||| ||||||||||||| |||| ||||| ||||||||||||||||||| | || |||| |||||||||| || |||  |    
T  45033286 agttatctatgtagaaagttagttagggagttagttaccccaaatcactgtaaataagctacacctatgtactaattca-tatcttttattcatttgcat 45033384  T
Q  117 cttagtaatgacttctagagagaattacgcaatctatctttccattgcatttgacctagaaccatagaatcctttaattcat 198  Q
    ||| || |||||| ||||||| |||||  ||||||||||||||||||||||||| |||||||||| ||||| ||| ||||||    
T  45033385 ctttgtgatgactcctagagaaaattatacaatctatctttccattgcatttgatctagaaccatggaatcttttgattcat 45033466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 27 - 198
Target Start/End: Original strand, 17308630 - 17308793
Alignment:
Q  27 gtagaaagttagttggggagttagttactccaagtcactataaataagctacacctatgcattatttcattatcttttatacaattgtttcttagtaatg 126  Q
    |||||||||||||| |||||||||||||||||| ||||||||||||||  |||||| ||       |||| |||||||||||||||||||||| ||||||    
T  17308630 gtagaaagttagttagggagttagttactccaaatcactataaataagtcacacctttg-------tcat-atcttttatacaattgtttcttggtaatg 17308721  T
Q  127 acttctagagagaattacgcaatctatctttccattgcatttgacctagaaccatagaatcctttaattcat 198  Q
    ||| |||||| ||||||| ||||||||||||||||||||||||| ||||||| || ||||||||| ||||||    
T  17308722 actcctagagtgaattacacaatctatctttccattgcatttgatctagaacaatggaatcctttgattcat 17308793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 27 - 198
Target Start/End: Original strand, 30191518 - 30191686
Alignment:
Q  27 gtagaaagttagttggggagttagttactccaagtcactataaataagctacacctatgcattatttcattatcttttatacaattgtttcttagtaatg 126  Q
    |||||||||||||| |||| |||||||  |||| |||||||||||||   || ||| || || |||| || |||||||||||||||||||||| ||||||    
T  30191518 gtagaaagttagttagggatttagttatgccaaatcactataaataaatcac-cctgtgtat-attttat-atcttttatacaattgtttcttggtaatg 30191614  T
Q  127 acttctagagagaattacgcaatctatctttccattgcatttgacctagaaccatagaatcctttaattcat 198  Q
    | || ||||||||||||   ||||||||||| ||||| |||||| |||||||||| ||||||||| ||||||    
T  30191615 atttttagagagaattatataatctatcttttcattgtatttgatctagaaccatggaatcctttgattcat 30191686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 131 - 198
Target Start/End: Original strand, 14007778 - 14007845
Alignment:
Q  131 ctagagagaattacgcaatctatctttccattgcatttgacctagaaccatagaatcctttaattcat 198  Q
    |||||||||||||  ||||| |||||||||||||||||||||||||||||| ||||||||| ||||||    
T  14007778 ctagagagaattagacaatccatctttccattgcatttgacctagaaccatggaatcctttgattcat 14007845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 98 - 162
Target Start/End: Original strand, 25302815 - 25302879
Alignment:
Q  98 atcttttatacaattgtttcttagtaatgacttctagagagaattacgcaatctatctttccatt 162  Q
    ||||||||||||||||||||||||| |||||| |||||||| |||| ||| ||||||||||||||    
T  25302815 atcttttatacaattgtttcttagtgatgactcctagagagcattatgcattctatctttccatt 25302879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 100 - 163
Target Start/End: Original strand, 41602457 - 41602520
Alignment:
Q  100 cttttatacaattgtttcttagtaatgacttctagagagaattacgcaatctatctttccattg 163  Q
    ||||||||||||||||||||||| |||||| |||||||| |||| ||| |||||||||||||||    
T  41602457 cttttatacaattgtttcttagtgatgactcctagagagcattatgcattctatctttccattg 41602520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 98 - 163
Target Start/End: Original strand, 25306810 - 25306875
Alignment:
Q  98 atcttttatacaattgtttcttagtaatgacttctagagagaattacgcaatctatctttccattg 163  Q
    ||||||||||||||||||||||||| ||||||  ||||||| |||| ||| |||||||||||||||    
T  25306810 atcttttatacaattgtttcttagtgatgactcatagagagcattatgcattctatctttccattg 25306875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 27 - 73
Target Start/End: Complemental strand, 4399620 - 4399574
Alignment:
Q  27 gtagaaagttagttggggagttagttactccaagtcactataaataa 73  Q
    |||||||||||||| |||||||||||||||||| |||||||||||||    
T  4399620 gtagaaagttagttagggagttagttactccaactcactataaataa 4399574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 133 - 198
Target Start/End: Complemental strand, 3372521 - 3372456
Alignment:
Q  133 agagagaattacgcaatctatctttccattgcatttgacctagaaccatagaatcctttaattcat 198  Q
    |||||||||||   ||||||||||||||||| |||||||||||||| || ||||| ||| ||||||    
T  3372521 agagagaattatagaatctatctttccattgtatttgacctagaactatggaatcttttgattcat 3372456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 101; Significance: 3e-50; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 27 - 191
Target Start/End: Complemental strand, 34350509 - 34350345
Alignment:
Q  27 gtagaaagttagttggggagttagttactccaagtcactataaataagctacacctatgcattatttcattatcttttatacaattgtttcttagtaatg 126  Q
    |||||||||||||| |||||||||||||||||| ||| ||||||||| ||||||||||| | ||||||| ||||||||||||||||||||||||||||||    
T  34350509 gtagaaagttagttagggagttagttactccaaatcattataaataaactacacctatgtactatttcactatcttttatacaattgtttcttagtaatg 34350410  T
Q  127 acttctagagagaattacgcaatctatctttccattgcatttgacctagaaccatagaatccttt 191  Q
    ||| ||| ||||||||||  || |||| ||||| ||| ||||||||||||||||| |||||||||    
T  34350409 actcctaaagagaattacataaactatttttccgttgtatttgacctagaaccatggaatccttt 34350345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 45 - 198
Target Start/End: Original strand, 15688987 - 15689140
Alignment:
Q  45 agttagttactccaagtcactataaataagctacacctatgcattatttcat-tatcttttatacaattgtttcttagtaatgacttctagagagaatta 143  Q
    ||||||||||||||| |||||||||||||||||| |||||| | |||||  | | | |||||| || || | |||| || |||||| |||||||||||||    
T  15688987 agttagttactccaaatcactataaataagctactcctatgtactattttctatcttttttattcatttctatctttgtgatgact-ctagagagaatta 15689085  T
Q  144 cgcaatctatctttccattgcatttgacctagaaccatagaatcctttaattcat 198  Q
    | |||||||||||||||||||||||||||||||| ||| ||||||||| ||||||    
T  15689086 cacaatctatctttccattgcatttgacctagaatcatggaatcctttgattcat 15689140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 27 - 106
Target Start/End: Original strand, 24544664 - 24544742
Alignment:
Q  27 gtagaaagttagttggggagttagttactccaagtcactataaataagctacacctatgcattatttcattatcttttat 106  Q
    |||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||| | ||||||| ||||||||||    
T  24544664 gtagaaagttagttagggagttagttactccaaatcactataaataagctacacctatgtactatttca-tatcttttat 24544742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 98 - 174
Target Start/End: Complemental strand, 9373675 - 9373599
Alignment:
Q  98 atcttttatacaattgtttcttagtaatgacttctagagagaattacgcaatctatctttccattgcatttgaccta 174  Q
    ||||||||| || || | |||| || |||||| ||| ||| |||||| || ||||||||||||||||||||||||||    
T  9373675 atcttttattcatttatatctttgttatgactcctatagaaaattacacattctatctttccattgcatttgaccta 9373599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 78
Target Start/End: Original strand, 31528826 - 31528873
Alignment:
Q  33 agttagttggggagttagttactccaagt--cactataaataagctac 78  Q
    |||||||| ||||||||||||||||||||  | |||||||||||||||    
T  31528826 agttagttagggagttagttactccaagttactctataaataagctac 31528873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 96; Significance: 3e-47; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 27 - 198
Target Start/End: Original strand, 28133655 - 28133826
Alignment:
Q  27 gtagaaagttagttggggagttagttactccaagtcactataaataagctacacctatgcattatttcattatcttttatacaattgtttcttagtaatg 126  Q
    |||||||||||||| | |||||||||||||||||||||||||||||||||||||||||| | |||||||  ||||||||| ||||||  |||| || |||    
T  28133655 gtagaaagttagttagagagttagttactccaagtcactataaataagctacacctatgtactatttcaccatcttttattcaattgcatctttgtgatg 28133754  T
Q  127 acttctagagagaattacgcaatctatctttccattgcatttgacctagaaccatagaatcctttaattcat 198  Q
    ||| |||||||||| ||| |||| || ||||||||||||||||| |||||||||| ||||||||| ||||||    
T  28133755 actcctagagagaactacacaatttacctttccattgcatttgatctagaaccatggaatcctttgattcat 28133826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 27 - 198
Target Start/End: Original strand, 4602229 - 4602399
Alignment:
Q  27 gtagaaagttagttggggagttagttactccaagtcactataaataagctacacctatgcattatttcattatcttttatacaattgtttcttagtaatg 126  Q
    |||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||| | ||||||| ||||||||||  |||||  |||| || |||    
T  4602229 gtagaaagttagttagggagttagttactccaaatcactataaataagctacacctatgtactatttca-tatcttttatttaattgcatctttgttatg 4602327  T
Q  127 acttctagagagaattacgcaatctatctttccattgcatttgacctagaaccatagaatcctttaattcat 198  Q
    |||  ||||||||| ||  |||| || ||||||||||||||||| |||||||||| ||||||||| ||||||    
T  4602328 actcatagagagaactatacaatttacctttccattgcatttgatctagaaccatggaatcctttgattcat 4602399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 101 - 198
Target Start/End: Original strand, 41874519 - 41874616
Alignment:
Q  101 ttttatacaattgtttcttagtaatgacttctagagagaattacgcaatctatctttccattgcatttgacctagaaccatagaatcctttaattcat 198  Q
    ||||||||||||||||||| ||||||||| ||||||||||||||  ||||||||||||||||||||||||||||||||||| ||||||||| ||||||    
T  41874519 ttttatacaattgtttcttggtaatgactcctagagagaattacaaaatctatctttccattgcatttgacctagaaccatggaatcctttgattcat 41874616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 45 - 198
Target Start/End: Original strand, 4609059 - 4609211
Alignment:
Q  45 agttagttactccaagtcactataaataagctacacctatgcattatttcattatcttttatacaattgtttcttagtaatgacttctagagagaattac 144  Q
    ||||||||||||||| ||||||||||||||||||||||||| | ||||||| |||||||||| ||||||  |||| || |||||| |||||||||| ||     
T  4609059 agttagttactccaaatcactataaataagctacacctatgtactatttca-tatcttttattcaattgcatctttgtgatgactgctagagagaactat 4609157  T
Q  145 gcaatctatctttccattgcatttgacctagaaccatagaatcctttaattcat 198  Q
     |||| || ||||| ||||||||||| ||||||| || ||||||||| ||||||    
T  4609158 acaatttacctttcaattgcatttgatctagaacaattgaatcctttgattcat 4609211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 31 - 198
Target Start/End: Original strand, 27682131 - 27682297
Alignment:
Q  31 aaagttagttggggagttagttactccaagtcactataaataagctacacctatgcattatttcattatcttttatacaattgtttcttagtaatgactt 130  Q
    |||||||||| |||||||||||||||||| |||| |||||||||| | ||||||| | |||| ||  ||||||||| || |||  |||| || ||||||     
T  27682131 aaagttagttagggagttagttactccaaatcacaataaataagcaagacctatgtactattccac-atcttttattcatttgcatctttgtgatgactc 27682229  T
Q  131 ctagagagaattacgcaatctatctttccattgcatttgacctagaaccatagaatcctttaattcat 198  Q
    |||||||||| ||| |||| || ||||||||||||||||| |||||||||| ||||||||| ||||||    
T  27682230 ctagagagaactacacaatttacctttccattgcatttgatctagaaccatggaatcctttgattcat 27682297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 98 - 163
Target Start/End: Original strand, 35244170 - 35244235
Alignment:
Q  98 atcttttatacaattgtttcttagtaatgacttctagagagaattacgcaatctatctttccattg 163  Q
    |||||||||| |||| ||||||||| |||||| |||||||| |||| ||| |||||||||||||||    
T  35244170 atcttttatataattttttcttagtgatgactcctagagagcattatgcattctatctttccattg 35244235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 93; Significance: 2e-45; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 45 - 191
Target Start/End: Original strand, 29924590 - 29924729
Alignment:
Q  45 agttagttactccaagtcactataaataagctacacctatgcattatttcattatcttttatacaattgtttcttagtaatgacttctagagagaattac 144  Q
    ||||||||||||||||||||||||||||||||||||||||       || ||||||||||||| |||||||| |||||||||||| ||||||||||||||    
T  29924590 agttagttactccaagtcactataaataagctacacctat-------tttattatcttttatataattgttttttagtaatgactcctagagagaattac 29924682  T
Q  145 gcaatctatctttccattgcatttgacctagaaccatagaatccttt 191  Q
     ||||||||||||||||||||||||||||||||| || |||||||||    
T  29924683 acaatctatctttccattgcatttgacctagaactatggaatccttt 29924729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 27 - 191
Target Start/End: Original strand, 21464441 - 21464611
Alignment:
Q  27 gtagaaagttagttggggagttagttactccaagtcactataaataagctacacctatgcattatttcattatcttttatacaattgttt-----cttag 121  Q
    |||||||||||||| ||| |||||||||||||| ||||| |||||||||||||| |||| | ||||| | | |||||||| || |  |||     ||| |    
T  21464441 gtagaaagttagttagggggttagttactccaaatcactgtaaataagctacacttatgtactattttact-tcttttattcattcattttctacctttg 21464539  T
Q  122 taatgacttctagag--agaattacgcaatctatctttccattgcatttgacctagaaccatagaatccttt 191  Q
    |||||||| ||||||  |||||||| ||||||||||||||||||||||||| |||||||||| |||| ||||    
T  21464540 taatgactcctagagagagaattacacaatctatctttccattgcatttgatctagaaccatggaattcttt 21464611  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 98 - 163
Target Start/End: Original strand, 30511162 - 30511227
Alignment:
Q  98 atcttttatacaattgtttcttagtaatgacttctagagagaattacgcaatctatctttccattg 163  Q
    ||||||||||||||||||||||| | || ||| |||||||  |||| ||| ||||||||| |||||    
T  30511162 atcttttatacaattgtttcttactgataactcctagagaacattatgcattctatcttttcattg 30511227  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 59
Target Start/End: Original strand, 965023 - 965055
Alignment:
Q  27 gtagaaagttagttggggagttagttactccaa 59  Q
    |||||||||||||| ||||||||||||||||||    
T  965023 gtagaaagttagttagggagttagttactccaa 965055  T

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Target: scaffold0570 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: scaffold0570
Description:

Target: scaffold0570; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 45 - 125
Target Start/End: Complemental strand, 3094 - 3010
Alignment:
Q  45 agttagttactccaagtcactataaataagctacacctatgcattatttcatta----tcttttatacaattgtttcttagtaat 125  Q
    |||||||||||||||||||||||||||| |||||||| ||| | ||||||| ||    ||||||||||||||||||||| |||||    
T  3094 agttagttactccaagtcactataaatatgctacaccgatgtactatttcactatctttcttttatacaattgtttcttggtaat 3010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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