View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3715_low_5 (Length: 336)
Name: NF3715_low_5
Description: NF3715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3715_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 307; Significance: 1e-173; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 9 - 319
Target Start/End: Original strand, 5630861 - 5631171
Alignment:
| Q |
9 |
caatgtgaaccttgttattgcattaaaatgcgagtaaatgtggccgattcagccgaaattgtagctgtgctgttgttgcagagacatctaaaacctttat |
108 |
Q |
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| T |
5630861 |
caatgtgaaccttgttattgcattaaaatgcgagtaaatgtggccgattcagccgaaattgtagctgtgctgttgttgcagagacatctaaaacctttat |
5630960 |
T |
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| Q |
109 |
attgcggcaacaattgcagttgcggagcacaatgtagaactgtgttgtgaatcggtagtcattttaatctagggttagttaaaactcaggtgttaacatg |
208 |
Q |
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| T |
5630961 |
attgcggcaacaattgcagttgcggagcacaatgtagaactgtgttgtgaatcggtagtcattttagtctagggttagttaaaactcaggtgttaacatg |
5631060 |
T |
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| Q |
209 |
ttagtccagggttagttaactatgagcatcaaatgctacttaaacggtaatgtgtggaccaatataacagatgaattatggtttacatttggcatagtat |
308 |
Q |
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| T |
5631061 |
ttagtccagggttagttaactatgagcatcaaatgctacttaaacggtaatgtgtggaccaatataacagatgaattatggtttacatttggcatagtat |
5631160 |
T |
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| Q |
309 |
cggttaagaac |
319 |
Q |
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| T |
5631161 |
cggttaagaac |
5631171 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 79 - 141
Target Start/End: Original strand, 9928373 - 9928435
Alignment:
| Q |
79 |
tgttgttgcagagacatctaaaacctttatattgcggcaacaattgcagttgcggagcacaat |
141 |
Q |
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| T |
9928373 |
tgttgttgcagagacatctaaaacttttacattgcggacacaattgcagttgtggaacacaat |
9928435 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 88 - 141
Target Start/End: Complemental strand, 16950881 - 16950828
Alignment:
| Q |
88 |
agagacatctaaaacctttatattgcggcaacaattgcagttgcggagcacaat |
141 |
Q |
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| T |
16950881 |
agagacctctaaaactgttatattgcggccacaattgcagttgcggaccacaat |
16950828 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 93 - 149
Target Start/End: Original strand, 15418318 - 15418374
Alignment:
| Q |
93 |
catctaaaacctttatattgcggcaacaattgcagttgcggagcacaatgtagaact |
149 |
Q |
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| T |
15418318 |
catctaaaatctttatattgcggccacaattgcagttgtagaccacaatttagaact |
15418374 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 79 - 115
Target Start/End: Complemental strand, 24617209 - 24617173
Alignment:
| Q |
79 |
tgttgttgcagagacatctaaaacctttatattgcgg |
115 |
Q |
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| T |
24617209 |
tgttgttgcagagacctttaaaacctttatattgcgg |
24617173 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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