View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3715_low_9 (Length: 275)
Name: NF3715_low_9
Description: NF3715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3715_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 248; Significance: 1e-138; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 17 - 264
Target Start/End: Original strand, 31345850 - 31346097
Alignment:
| Q |
17 |
gttacctcctaaagaaaaatcaaagataaaagctaggcaaggtgtaccacatgtagggttggaggaacttgatgtcaaagatccttcaacaatggatagt |
116 |
Q |
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| T |
31345850 |
gttacctcctaaagaaaaatcaaagataaaagctaggcaaggtgtaccacatgtagggttggaggaacttgatgtcaaagatccttcaacaatggatagt |
31345949 |
T |
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| Q |
117 |
gttccggctgatggaaaaacggttggtgaggtaatgtttagagggaatacaatgatgagtggttattttcaagacttcaaagcaacagaagaagcattca |
216 |
Q |
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| T |
31345950 |
gttccggctgatggaaaaacggttggtgaggtaatgtttagagggaatacaatgatgagtggttattttcaagacttcaaagcaacagaagaagcattca |
31346049 |
T |
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| Q |
217 |
aagatggttggtttcatagtggcgatcttgctgtgaaacattctgatg |
264 |
Q |
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| T |
31346050 |
aagatggttggtttcatagtggcgatcttgctgtgaaacattctgatg |
31346097 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 21 - 264
Target Start/End: Original strand, 31317159 - 31317402
Alignment:
| Q |
21 |
cctcctaaagaaaaatcaaagataaaagctaggcaaggtgtaccacatgtagggttggaggaacttgatgtcaaagatccttcaacaatggatagtgttc |
120 |
Q |
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| T |
31317159 |
cctcctgaagaaagatcaaagatgaaagctaggcaaggtgtgccgcatgtggcactggaggaaattgatgttaaagattctgcaactatggaaagtgttc |
31317258 |
T |
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| Q |
121 |
cggctgatggaaaaacggttggtgaggtaatgtttagagggaatacaatgatgagtggttattttcaagacttcaaagcaacagaagaagcattcaaaga |
220 |
Q |
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| T |
31317259 |
tagctgacggaaaaacggttggcgagataatgtttagagggaatacagtgatgagtggatattttagagatttgaaagcaacagaagaagctttcaaaga |
31317358 |
T |
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| Q |
221 |
tggttggtttcatagtggcgatcttgctgtgaaacattctgatg |
264 |
Q |
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| T |
31317359 |
cggttggtttcatagcggggatctagctgtgaaacactctgatg |
31317402 |
T |
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