View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3716_low_2 (Length: 274)
Name: NF3716_low_2
Description: NF3716
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3716_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 19 - 265
Target Start/End: Original strand, 23871115 - 23871362
Alignment:
| Q |
19 |
atgttaagatggtatctgatttgggatcctgcagcattacatcaaaa-atgttagtgtcagaaccaacttaagtttaactgttaaacttttcaaccatta |
117 |
Q |
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| T |
23871115 |
atgttaagttggtatctgatttgggatcctgcagcataacatcaaaaaatgttagtgtcagaaccaacttaagtttaactgttaaacttttcaagcatta |
23871214 |
T |
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| Q |
118 |
actcatcaacacaaaattgttttgataaataaattaaccacatgtagaaccaagactggttcttttacatgcaatgacactgaattagtgtttagtacac |
217 |
Q |
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| T |
23871215 |
actcatcaacacaaaattgttttgataaataaattaaccacatgtagaaccaagactggttcttttacatgcaatgacactgagatagtgtttagtacac |
23871314 |
T |
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| Q |
218 |
aaacataatgaaatactatcaatgctatattctgaaatttagtattat |
265 |
Q |
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| T |
23871315 |
aaacataatgaaatactatcaatgctatattctgaaatttagtattat |
23871362 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 19 - 238
Target Start/End: Complemental strand, 23440870 - 23440650
Alignment:
| Q |
19 |
atgttaagatggtatctgatttgggat-cctgcagcattacatca-aaaatgttagtgtcagaaccaacttaagtttaactgttaaacttttcaaccatt |
116 |
Q |
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|||||||| |||| ||||||||||||| |||| |||| |||||| |||||||| |||||| ||||||||||| |||||| |||||||||||||| |||| |
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| T |
23440870 |
atgttaagttggtttctgatttgggattcctggtgcatgacatcacaaaatgttggtgtcaaaaccaacttaaatttaaccgttaaacttttcaagcatt |
23440771 |
T |
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| Q |
117 |
aactcatcaacacaaaattgttttgataaataaattaaccacatgtagaaccaagactggttcttttacatgc-aatgacactgaattagtgtttagtac |
215 |
Q |
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| T |
23440770 |
aacacatcaacaaaaaattgatttggcatataaatgtaccacatgtggaatcattactggttcatttacatgcaaatgaca--gagttagtgtttagcag |
23440673 |
T |
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| Q |
216 |
acaaacataatgaaatactatca |
238 |
Q |
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||||||| |||| |||||||||| |
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| T |
23440672 |
acaaacaaaatggaatactatca |
23440650 |
T |
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