View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3717_high_1 (Length: 647)

Name: NF3717_high_1
Description: NF3717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3717_high_1
NF3717_high_1
[»] chr3 (1 HSPs)
chr3 (8-632)||(3932462-3933086)


Alignment Details
Target: chr3 (Bit Score: 613; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 613; E-Value: 0
Query Start/End: Original strand, 8 - 632
Target Start/End: Original strand, 3932462 - 3933086
Alignment:
Q  8 cagcagagatggaacgggttgaggagttcaaggttggagattgggttcgtgttcgtccaacccttacaacttcaaagcatggattaggaaatgtggtacc 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3932462 cagcagagatggaacgggttgaggagttcaaggttggagattgggttcgtgttcgtccaacccttacaacttcaaagcatggattaggaaatgtggtacc 3932561  T
Q  108 gggaaccattggcattgtatattgtatccgacctgacagtagtttgttagtcgagttgagctatgttcaaaatccatggcattgtgaaccagaggagatt 207  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3932562 aggaaccattggcattgtatattgtatccgacctgacagtagtttgttagtcgagttgagctatgttcaaaatccatggcattgtgaaccagaggagatt 3932661  T
Q  208 gagcatgttcctccttttagggtaagaggaatgtagattattttaattctctgacttaatatttttgtcctatttttgttacatgatttgtatttgtctt 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3932662 gagcatgttcctccttttagggtaagaggaatgtagattattttaattctctgacttaatatttttgtcctatttttgttacatgatttgtatttgtctt 3932761  T
Q  308 acagattggtgatagggtatgtgtgaagcgatctgttgcagaacctagatatgcttggggtggtgagacacatcacagtgttggaagaataagtgagatt 407  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3932762 acagattggtgatagggtatgtgtgaagcgatctgtcgcagaacctagatatgcttggggtggtgagacacatcacagtgttggaagaataagtgagatt 3932861  T
Q  408 gagaatgatggtctcttaataatagaaataccaaatcgacccataccatggcaagctgatccatctgatatggagaaggtggaagattttaaggtgacaa 507  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3932862 gagaatgatggtctcttaataatagaaataccaaatcgacccataccatggcaagctgatccatctgatatggagaaggtggaagattttaaggtgacaa 3932961  T
Q  508 ttcttttggttgatgttgatcatttgcttccattttaagtttgttaccttgtacttactgggtaatgccttattattgttttcctgtatttaaattgtta 607  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  3932962 ttcttttggttgatgttgatcatttgcttccattttaagtttgttaccttgtacttactgcgtaatgccttattattgttttcctgtatttaaattgtta 3933061  T
Q  608 atatatctgaaatcaggttggagat 632  Q
    |||||||||||||||||||||||||    
T  3933062 atatatctgaaatcaggttggagat 3933086  T

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