View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3717_high_10 (Length: 219)
Name: NF3717_high_10
Description: NF3717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3717_high_10 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 167; Significance: 1e-89; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 1 - 202
Target Start/End: Complemental strand, 6781459 - 6781258
Alignment:
| Q |
1 |
cgcgtgggatacacgcgcttgacggtttgttttcctaaaaacgggtcgaaacgacccgcaactgaaccggttggatccatctagttacttgaat-cagca |
99 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
6781459 |
cgcgtgggatacacgcgcttgacggtttgttttcctaaaa-cgggtcgaaacgacccgcaactgaaccggttggatccatctagttacttgaattcagca |
6781361 |
T |
|
| Q |
100 |
cgacagaaaattaagcagttacggcaaagttcagcaaacaaaaaatatatgaatcacaattattcagccttgttttctaaagtgaaaatttcaggcaatc |
199 |
Q |
| |
|
| ||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
6781360 |
caacagaaaattaagcagttagggcaaagttcagcaaacaaagaatatatgaatcacaattattcaatcttgttttctaaagtgaaaatttcaggcaatc |
6781261 |
T |
|
| Q |
200 |
gat |
202 |
Q |
| |
|
||| |
|
|
| T |
6781260 |
gat |
6781258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 100; Significance: 1e-49; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 1 - 202
Target Start/End: Original strand, 25470574 - 25470776
Alignment:
| Q |
1 |
cgcgtgggatacacgcgcttgacggtttgttttcctaaaaacgggtcgaaacgacccgcaactgaaccggttggatccatctagttacttgaatcagcac |
100 |
Q |
| |
|
||||| |||||||| | || |||||||||||||||||||| ||||||||||||||| |||||||||| ||||||||| |||||||||| | ||||||| |
|
|
| T |
25470574 |
cgcgtaggatacacacactggacggtttgttttcctaaaa-cgggtcgaaacgacctgcaactgaactggttggatctatctagttacagggttcagcac |
25470672 |
T |
|
| Q |
101 |
gaca-gaaaattaagcagttacggcaaagttcagcaaacaaaaaatatatgaatcacaattattcagccttgtttt-ctaaagtgaaaatttcaggcaat |
198 |
Q |
| |
|
||| |||||||||||||||||||||||| ||| |||||| | |||| |||||||||||||||||| |||||||| |||||||||||||| |||||||| |
|
|
| T |
25470673 |
gacttgaaaattaagcagttacggcaaagatcaacaaacatagaatacatgaatcacaattattcaatcttgttttgctaaagtgaaaattgcaggcaat |
25470772 |
T |
|
| Q |
199 |
cgat |
202 |
Q |
| |
|
|||| |
|
|
| T |
25470773 |
cgat |
25470776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University