View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3717_high_6 (Length: 314)
Name: NF3717_high_6
Description: NF3717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3717_high_6 |
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Alignment Details
Target: chr2 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 17 - 307
Target Start/End: Original strand, 6864099 - 6864389
Alignment:
| Q |
17 |
agttatttagtggaatccaagtgaatttattctaatattagataaaggattcgtgttaaaaatgacgtgttaagagaatatgttgctaacaataacaatt |
116 |
Q |
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| T |
6864099 |
agttatttagtggaatccaagtgaatttattctaatattagataaaggattcgtgttaaaaatgacgtgttaagagaatatgttgctaacaataacaatt |
6864198 |
T |
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| Q |
117 |
ctttttaatcatattcataagggcataactgtgaagtataaatgtgactataattctaactcacctccataggaatgcctctattccctggtggtagttc |
216 |
Q |
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| T |
6864199 |
ctttttaatcatattcataagggcataactgtgaagtataaatgtgactataattctaactcacctccataggaatgcctctattccctggtggtagttc |
6864298 |
T |
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| Q |
217 |
aacaccagttccatttgcccttggaaatcggaaacaactaggccgatcgttaatggcaacagcagtagcaaccatgtgaataatctctgct |
307 |
Q |
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| T |
6864299 |
aacaccagttccatttgcccttggaaatcggaaacaactaggccgatcgttaatggcaacagcagtagcaaccatgtgaataatctctgct |
6864389 |
T |
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Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 212 - 294
Target Start/End: Complemental strand, 49147966 - 49147884
Alignment:
| Q |
212 |
agttcaacaccagttccatttgcccttggaaatcggaaacaactaggccgatcgttaatggcaacagcagtagcaaccatgtg |
294 |
Q |
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| T |
49147966 |
agttcaacaccaatgccatttcccctcgggtatcggaaacaacttggtcgatcgtcaatggccgctgcagtggcaaccatgtg |
49147884 |
T |
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