View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3717_low_11 (Length: 243)

Name: NF3717_low_11
Description: NF3717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3717_low_11
NF3717_low_11
[»] chr4 (24 HSPs)
chr4 (71-243)||(35036914-35037087)
chr4 (160-243)||(711958-712042)
chr4 (160-241)||(960890-960972)
chr4 (162-243)||(55272394-55272476)
chr4 (159-243)||(46827724-46827809)
chr4 (161-243)||(32728356-32728439)
chr4 (162-243)||(17619170-17619252)
chr4 (164-243)||(3756264-3756344)
chr4 (161-243)||(48435597-48435680)
chr4 (159-243)||(28988470-28988555)
chr4 (161-241)||(49229684-49229765)
chr4 (25-60)||(35036810-35036845)
chr4 (163-243)||(41878407-41878488)
chr4 (159-243)||(55966364-55966449)
chr4 (160-243)||(25051691-25051775)
chr4 (162-241)||(27550309-27550389)
chr4 (160-243)||(28982840-28982924)
chr4 (164-243)||(38851515-38851595)
chr4 (88-126)||(35037203-35037241)
chr4 (159-243)||(27864561-27864646)
chr4 (160-243)||(1771284-1771368)
chr4 (162-241)||(12496956-12497036)
chr4 (164-243)||(41327561-41327641)
chr4 (164-243)||(43514704-43514784)
[»] chr3 (18 HSPs)
chr3 (154-243)||(9434116-9434206)
chr3 (160-243)||(10457910-10457994)
chr3 (160-243)||(52627995-52628079)
chr3 (161-243)||(25996267-25996350)
chr3 (158-243)||(4190283-4190369)
chr3 (162-243)||(51757593-51757675)
chr3 (162-243)||(34791829-34791911)
chr3 (159-243)||(24688420-24688505)
chr3 (164-243)||(53581876-53581956)
chr3 (163-243)||(42394437-42394518)
chr3 (158-243)||(46941049-46941135)
chr3 (160-243)||(47191044-47191127)
chr3 (162-243)||(42100688-42100770)
chr3 (162-243)||(45126946-45127028)
chr3 (158-243)||(54246166-54246252)
chr3 (210-243)||(51249357-51249390)
chr3 (163-243)||(54237097-54237178)
chr3 (160-243)||(40808863-40808947)
[»] chr5 (10 HSPs)
chr5 (161-243)||(17208073-17208156)
chr5 (158-243)||(30622737-30622822)
chr5 (162-243)||(32473412-32473494)
chr5 (158-243)||(7617129-7617215)
chr5 (160-239)||(38470577-38470657)
chr5 (162-243)||(22512305-22512387)
chr5 (160-243)||(18033980-18034064)
chr5 (157-243)||(41334681-41334768)
chr5 (162-243)||(2614667-2614749)
chr5 (162-233)||(33855071-33855143)
[»] chr2 (19 HSPs)
chr2 (161-243)||(18491704-18491787)
chr2 (159-243)||(43114554-43114639)
chr2 (160-243)||(966852-966936)
chr2 (164-243)||(4299438-4299518)
chr2 (164-243)||(6518487-6518566)
chr2 (164-243)||(11825672-11825752)
chr2 (160-243)||(16803966-16804050)
chr2 (160-243)||(16843248-16843332)
chr2 (164-243)||(41281992-41282072)
chr2 (162-243)||(12415478-12415560)
chr2 (162-243)||(12427538-12427620)
chr2 (159-243)||(34895759-34895844)
chr2 (161-243)||(14285675-14285758)
chr2 (163-243)||(19047158-19047239)
chr2 (163-243)||(34817794-34817875)
chr2 (162-243)||(1750414-1750496)
chr2 (158-243)||(4764744-4764830)
chr2 (159-243)||(12302271-12302356)
chr2 (164-243)||(8896601-8896681)
[»] chr7 (16 HSPs)
chr7 (162-243)||(31513287-31513369)
chr7 (163-239)||(31408655-31408732)
chr7 (159-243)||(27535249-27535334)
chr7 (159-243)||(40236916-40237001)
chr7 (152-243)||(33384860-33384953)
chr7 (158-243)||(5015391-5015477)
chr7 (161-243)||(9216301-9216383)
chr7 (161-243)||(35069720-35069803)
chr7 (164-243)||(4638217-4638297)
chr7 (164-243)||(10573751-10573831)
chr7 (161-243)||(5194249-5194332)
chr7 (161-243)||(24280614-24280697)
chr7 (162-243)||(24001030-24001112)
chr7 (162-243)||(42538449-42538531)
chr7 (162-243)||(42972852-42972934)
chr7 (162-210)||(39998408-39998456)
[»] chr1 (20 HSPs)
chr1 (162-243)||(48119628-48119710)
chr1 (160-243)||(44112675-44112759)
chr1 (160-243)||(45639750-45639834)
chr1 (161-243)||(38113213-38113296)
chr1 (162-243)||(35003294-35003376)
chr1 (162-243)||(38335918-38336000)
chr1 (160-242)||(26585460-26585543)
chr1 (161-243)||(45705824-45705907)
chr1 (162-243)||(46168383-46168465)
chr1 (161-243)||(41065152-41065235)
chr1 (161-243)||(45427763-45427846)
chr1 (160-243)||(48498980-48499064)
chr1 (160-218)||(14427345-14427404)
chr1 (162-243)||(35000131-35000213)
chr1 (158-243)||(5489772-5489858)
chr1 (159-243)||(23989541-23989627)
chr1 (162-239)||(37814778-37814856)
chr1 (162-243)||(43571104-43571186)
chr1 (164-243)||(2497580-2497660)
chr1 (162-241)||(50448280-50448360)
[»] chr8 (13 HSPs)
chr8 (159-243)||(35181513-35181598)
chr8 (160-243)||(34304786-34304870)
chr8 (161-243)||(16603644-16603727)
chr8 (161-243)||(18066736-18066819)
chr8 (158-243)||(16358851-16358938)
chr8 (158-243)||(33630011-33630097)
chr8 (161-243)||(2546995-2547078)
chr8 (158-243)||(36743501-36743587)
chr8 (158-202)||(19386630-19386674)
chr8 (164-243)||(26125637-26125717)
chr8 (162-243)||(11582766-11582848)
chr8 (158-243)||(42295191-42295277)
chr8 (215-243)||(10678170-10678198)
[»] chr6 (15 HSPs)
chr6 (160-243)||(33242401-33242485)
chr6 (164-243)||(27441544-27441624)
chr6 (162-243)||(33253913-33253995)
chr6 (150-243)||(26670027-26670121)
chr6 (159-239)||(3213397-3213478)
chr6 (159-243)||(7273353-7273438)
chr6 (164-243)||(24204005-24204085)
chr6 (161-243)||(9698351-9698434)
chr6 (161-243)||(21279928-21280011)
chr6 (161-239)||(21293699-21293778)
chr6 (157-243)||(26466794-26466881)
chr6 (162-243)||(13743239-13743321)
chr6 (162-243)||(13748739-13748821)
chr6 (161-238)||(31109245-31109323)
chr6 (164-243)||(30735984-30736064)
[»] scaffold0003 (1 HSPs)
scaffold0003 (164-243)||(45737-45817)
[»] scaffold0100 (1 HSPs)
scaffold0100 (162-243)||(35474-35556)
[»] scaffold0119 (1 HSPs)
scaffold0119 (150-243)||(673-767)
[»] scaffold0038 (1 HSPs)
scaffold0038 (163-243)||(112656-112737)
[»] scaffold0385 (1 HSPs)
scaffold0385 (160-243)||(11249-11333)
[»] scaffold0157 (1 HSPs)
scaffold0157 (162-241)||(23441-23521)


Alignment Details
Target: chr4 (Bit Score: 150; Significance: 2e-79; HSPs: 24)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 71 - 243
Target Start/End: Original strand, 35036914 - 35037087
Alignment:
Q  71 agctgccactactagagaaaatacacgaatatagagaaaatacctcaatagctaaatccaattttcaaactattcacaataattttcaaaaggaaaatgt 170  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  35036914 agctgccactactagagaaaatacacgaatatagagaaaatacctcaatagctaaatccaattttcaaactattcacaataattttcaaaagaaaaatgt 35037013  T
Q  171 tacatgaacactctttaaccatacactctattgtaca-cccatgcattaaggacattttggtaaattcatctca 243  Q
    ||||||| ||| ||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||    
T  35037014 tacatgagcaccctttaaccatacactctattgtacaccccatgcattaaggatattttggtaaattcatctca 35037087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 160 - 243
Target Start/End: Original strand, 711958 - 712042
Alignment:
Q  160 aaggaaaatgttacatgaacactctttaaccatacactctattgtacaccc-atgcattaaggacattttggtaaattcatctca 243  Q
    |||||||||||||||||||||| |||||| ||||||| ||||||||||||| |||||||||||| ||||||||||||||||||||    
T  711958 aaggaaaatgttacatgaacaccctttaatcatacaccctattgtacaccctatgcattaaggatattttggtaaattcatctca 712042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 160 - 241
Target Start/End: Complemental strand, 960972 - 960890
Alignment:
Q  160 aaggaaaatgttacatgaacactctttaaccatacactctattgtacaccc-atgcattaaggacattttggtaaattcatct 241  Q
    |||||||||||||||||||||| |||||| ||||||||||||||||||||| || ||||| ||||||||||||||||||||||    
T  960972 aaggaaaatgttacatgaacaccctttaatcatacactctattgtacaccctatacattagggacattttggtaaattcatct 960890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 162 - 243
Target Start/End: Complemental strand, 55272476 - 55272394
Alignment:
Q  162 ggaaaatgttacatgaacactctttaaccatacactctattgtaca-cccatgcattaaggacattttggtaaattcatctca 243  Q
    |||||||||||||||||||  |||||| |||||||||||||||||| ||||||||||||||| ||||||||||||||||||||    
T  55272476 ggaaaatgttacatgaacatcctttaatcatacactctattgtacaccccatgcattaaggatattttggtaaattcatctca 55272394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 159 - 243
Target Start/End: Complemental strand, 46827809 - 46827724
Alignment:
Q  159 aaaggaaaatgttacatgaacactctttaaccatacactctattgtacaccc-atgcattaaggacattttggtaaattcatctca 243  Q
    ||||||||||||||||||||||| |||||| ||||||||||||||||||||| |||||||||| || |||||||||||| ||||||    
T  46827809 aaaggaaaatgttacatgaacaccctttaatcatacactctattgtacacccaatgcattaagaacgttttggtaaatttatctca 46827724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 161 - 243
Target Start/End: Original strand, 32728356 - 32728439
Alignment:
Q  161 aggaaaatgttacatgaacactctttaaccatacactctattgtaca-cccatgcattaaggacattttggtaaattcatctca 243  Q
    ||||||||||||||||||||  |||||| ||||||| |||||||||| ||||||||||||||||||||| ||||||||||||||    
T  32728356 aggaaaatgttacatgaacatcctttaatcatacaccctattgtacaccccatgcattaaggacattttagtaaattcatctca 32728439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 162 - 243
Target Start/End: Complemental strand, 17619252 - 17619170
Alignment:
Q  162 ggaaaatgttacatgaacactctttaaccatacactctattgtaca-cccatgcattaaggacattttggtaaattcatctca 243  Q
    ||||||||||||||||||||  ||||| ||||||| |||||||||| ||||||||||||||| ||||||||||||||||||||    
T  17619252 ggaaaatgttacatgaacaccttttaatcatacaccctattgtacaccccatgcattaaggatattttggtaaattcatctca 17619170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 164 - 243
Target Start/End: Complemental strand, 3756344 - 3756264
Alignment:
Q  164 aaaatgttacatgaacactctttaaccatacactctattgtaca-cccatgcattaaggacattttggtaaattcatctca 243  Q
    |||||||||||||||||| |||||| ||||||| |||||||||| ||||||||||||||| ||||| ||||||| ||||||    
T  3756344 aaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatgcattaaggatattttagtaaatttatctca 3756264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 161 - 243
Target Start/End: Complemental strand, 48435680 - 48435597
Alignment:
Q  161 aggaaaatgttacatgaacactctttaaccatacactctattgtacaccc-atgcattaaggacattttggtaaattcatctca 243  Q
    |||||| ||||||||||||||  ||||| || |||| ||||||||||||| |||||||| |||||| |||||||||||||||||    
T  48435680 aggaaagtgttacatgaacaccatttaatcacacaccctattgtacaccccatgcattagggacatattggtaaattcatctca 48435597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 159 - 243
Target Start/End: Original strand, 28988470 - 28988555
Alignment:
Q  159 aaaggaaaatgttacatgaacactctttaaccatacactctattgtaca-cccatgcattaaggacattttggtaaattcatctca 243  Q
    ||||||||||||||||||||||| |||||  |||||||   |||||||| |||||||| || |||||||||| |||||||||||||    
T  28988470 aaaggaaaatgttacatgaacaccctttattcatacacctcattgtacaccccatgcactagggacattttgataaattcatctca 28988555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 161 - 241
Target Start/End: Complemental strand, 49229765 - 49229684
Alignment:
Q  161 aggaaaatgttacatgaacactctttaaccatacactctattgtacac-ccatgcattaaggacattttggtaaattcatct 241  Q
    |||||||||||| |||||||  |||||| ||||||| |||||||||||  ||||||||||||| ||| ||||||||||||||    
T  49229765 aggaaaatgttatatgaacatcctttaatcatacaccctattgtacacttcatgcattaaggatattctggtaaattcatct 49229684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 25 - 60
Target Start/End: Original strand, 35036810 - 35036845
Alignment:
Q  25 tattaagctaacaactaatataatttcatactagta 60  Q
    ||||||||||||||||||||||||||||||||||||    
T  35036810 tattaagctaacaactaatataatttcatactagta 35036845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 163 - 243
Target Start/End: Original strand, 41878407 - 41878488
Alignment:
Q  163 gaaaatgttacatgaacactctttaaccatacactctattgtacaccc-atgcattaaggacattttggtaaattcatctca 243  Q
    |||||||||||||||||||||||||  |||||||   ||||||||||| || ||||| ||| |||||| ||| |||||||||    
T  41878407 gaaaatgttacatgaacactctttattcatacacctcattgtacaccctatccattagggatattttgataagttcatctca 41878488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 159 - 243
Target Start/End: Complemental strand, 55966449 - 55966364
Alignment:
Q  159 aaaggaaaatgttacatgaacactctttaaccatacactctattgtaca-cccatgcattaaggacattttggtaaattcatctca 243  Q
    ||||||||||||||||| ||||| |||||  ||||||  | |||||||| |||||| |||| ||| |||||||||| |||||||||    
T  55966449 aaaggaaaatgttacataaacaccctttattcatacatcccattgtacatcccatgtattagggatattttggtaagttcatctca 55966364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 160 - 243
Target Start/End: Original strand, 25051691 - 25051775
Alignment:
Q  160 aaggaaaatgttacatgaacactctttaaccatacactctattgtacaccc-atgcattaaggacattttggtaaattcatctca 243  Q
    ||||||||||| |||||||||| |||||  | ||||| | ||||||||||| ||| |||| ||| |||||||||| |||||||||    
T  25051691 aaggaaaatgtcacatgaacacactttattcctacaccccattgtacaccctatgtattagggatattttggtaagttcatctca 25051775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 162 - 241
Target Start/End: Original strand, 27550309 - 27550389
Alignment:
Q  162 ggaaaatgttacatgaacactctttaaccatacactctattgtacacc-catgcattaaggacattttggtaaattcatct 241  Q
    |||||||||||||||||||| |||||    ||||||| |||||||||| |||| |||| ||| |||||||||| |||||||    
T  27550309 ggaaaatgttacatgaacaccctttatttctacactccattgtacacctcatgtattagggatattttggtaagttcatct 27550389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 160 - 243
Target Start/End: Complemental strand, 28982924 - 28982840
Alignment:
Q  160 aaggaaaatgttacatgaacactctttaaccatacactctattgtaca-cccatgcattaaggacattttggtaaattcatctca 243  Q
    |||||||||||||||||||||| |||||    ||||| |||||||||| |||||  |||| ||| |||||||||| |||||||||    
T  28982924 aaggaaaatgttacatgaacaccctttatttctacaccctattgtacatcccatatattagggatattttggtaagttcatctca 28982840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 164 - 243
Target Start/End: Original strand, 38851515 - 38851595
Alignment:
Q  164 aaaatgttacatgaacactctttaaccatacactctattgtacac-ccatgcattaaggacattttggtaaattcatctca 243  Q
    ||||||||||||||| |  |||||| ||||||   || ||||||| |||||||||| |||||||||| |||||||||||||    
T  38851515 aaaatgttacatgaatatcctttaatcatacatcataatgtacactccatgcattatggacattttgataaattcatctca 38851595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 88 - 126
Target Start/End: Original strand, 35037203 - 35037241
Alignment:
Q  88 aaaatacacgaatatagagaaaatacctcaatagctaaa 126  Q
    ||||| ||||| |||||||||||||||||||||||||||    
T  35037203 aaaattcacgagtatagagaaaatacctcaatagctaaa 35037241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 159 - 243
Target Start/End: Original strand, 27864561 - 27864646
Alignment:
Q  159 aaaggaaaatgttacatgaacactctttaaccatacactctattgtaca-cccatgcattaaggacattttggtaaattcatctca 243  Q
    ||||||||||||||||| |||||  ||||  ||||||  | |||||||| |||||| |||| ||| |||||||||| |||||||||    
T  27864561 aaaggaaaatgttacataaacaccatttattcatacatcccattgtacaccccatgtattagggatattttggtaagttcatctca 27864646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 243
Target Start/End: Complemental strand, 1771368 - 1771284
Alignment:
Q  160 aaggaaaatgttacatgaacactctttaaccatacactctattgtaca-cccatgcattaaggacattttggtaaattcatctca 243  Q
    |||||||||||||||||||||| |||||  | ||||| | |||||||| |||||| ||||  || |||||| ||| |||||||||    
T  1771368 aaggaaaatgttacatgaacaccctttattcctacaccccattgtacaccccatgtattagagatattttgataagttcatctca 1771284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 241
Target Start/End: Original strand, 12496956 - 12497036
Alignment:
Q  162 ggaaaatgttacatgaacactctttaaccatacactctattgtaca-cccatgcattaaggacattttggtaaattcatct 241  Q
    ||||||||||| |||||||| |||||  | ||||||| |||||||| |||||| ||||  || |||||||||| |||||||    
T  12496956 ggaaaatgttatatgaacaccctttattcctacactccattgtacatcccatgtattagagatattttggtaagttcatct 12497036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 243
Target Start/End: Complemental strand, 41327641 - 41327561
Alignment:
Q  164 aaaatgttacatgaacactctttaaccatacactctattgtacaccc-atgcattaaggacattttggtaaattcatctca 243  Q
    ||||||||||||  |||| |||||  || |||| | ||||||||||  ||||| || ||||||||||||||||||||||||    
T  41327641 aaaatgttacatagacaccctttattcacacaccccattgtacaccttatgcactacggacattttggtaaattcatctca 41327561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 243
Target Start/End: Complemental strand, 43514784 - 43514704
Alignment:
Q  164 aaaatgttacatgaacactctttaaccatacactctattgtacac-ccatgcattaaggacattttggtaaattcatctca 243  Q
    |||||||||||||||||| |||||  | ||||||| |||||||||  |||| |||| ||  |||||||||| |||||||||    
T  43514784 aaaatgttacatgaacaccctttattcctacactccattgtacacttcatgtattagggttattttggtaagttcatctca 43514704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 67; Significance: 7e-30; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 154 - 243
Target Start/End: Original strand, 9434116 - 9434206
Alignment:
Q  154 tttcaaaaggaaaatgttacatgaacactctttaaccatacactctattgtaca-cccatgcattaaggacattttggtaaattcatctca 243  Q
    |||||||||||||||||||||||||||| |||||| |||||||||||||||||| ||||||||||| |||||||||||||| |||||||||    
T  9434116 tttcaaaaggaaaatgttacatgaacaccctttaatcatacactctattgtacaccccatgcattagggacattttggtaatttcatctca 9434206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 160 - 243
Target Start/End: Complemental strand, 10457994 - 10457910
Alignment:
Q  160 aaggaaaatgttacatgaacactctttaaccatacactctattgtaca-cccatgcattaaggacattttggtaaattcatctca 243  Q
    ||||||||||||||||||||||  ||||| ||||||| |||||||||| ||||||||||||||| ||||||||||||| ||||||    
T  10457994 aaggaaaatgttacatgaacaccttttaatcatacaccctattgtacaccccatgcattaaggatattttggtaaatttatctca 10457910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 160 - 243
Target Start/End: Complemental strand, 52628079 - 52627995
Alignment:
Q  160 aaggaaaatgttacatgaacactctttaaccatacactctattgtacacc-catgcattaaggacattttggtaaattcatctca 243  Q
    |||||||||||||| ||||||| |||||| ||||||  |||||||||||| ||||||||||| | ||||||||||||||||||||    
T  52628079 aaggaaaatgttacgtgaacaccctttaatcatacatcctattgtacacctcatgcattaagtatattttggtaaattcatctca 52627995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 161 - 243
Target Start/End: Original strand, 25996267 - 25996350
Alignment:
Q  161 aggaaaatgttacatgaacactctttaaccatacactctattgtaca-cccatgcattaaggacattttggtaaattcatctca 243  Q
    ||||||||||||||||||||| |||||| ||||||   ||||||||| |||||  |||||||||||||||||||||||||||||    
T  25996267 aggaaaatgttacatgaacaccctttaatcatacatcttattgtacaccccatatattaaggacattttggtaaattcatctca 25996350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 158 - 243
Target Start/End: Complemental strand, 4190369 - 4190283
Alignment:
Q  158 aaaaggaaaatgttacatgaacactctttaaccatacactctattgtacacc-catgcattaaggacattttggtaaattcatctca 243  Q
    |||||||||||||||||||||||| |||||| ||||||| ||||||||||||  ||| ||||  || ||||||||||||||||||||    
T  4190369 aaaaggaaaatgttacatgaacaccctttaatcatacaccctattgtacaccttatgtattagagatattttggtaaattcatctca 4190283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 162 - 243
Target Start/End: Original strand, 51757593 - 51757675
Alignment:
Q  162 ggaaaatgttacatgaacactctttaaccatacactctattgtacacc-catgcattaaggacattttggtaaattcatctca 243  Q
    ||||||| |||||| ||||| |||||| ||||||| |||||||||||| ||||||||| ||||||||| |||| |||||||||    
T  51757593 ggaaaatattacataaacaccctttaatcatacaccctattgtacacctcatgcattatggacattttagtaatttcatctca 51757675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 162 - 243
Target Start/End: Original strand, 34791829 - 34791911
Alignment:
Q  162 ggaaaatgttacatgaacactctttaaccatacactctattgtacacc-catgcattaaggacattttggtaaattcatctca 243  Q
    |||||||||||||||||||| |||||| |||||||  ||||||| ||| ||||||||| |||||||||  ||| |||||||||    
T  34791829 ggaaaatgttacatgaacaccctttaatcatacaccatattgtaaacctcatgcattagggacattttaataatttcatctca 34791911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 159 - 243
Target Start/End: Complemental strand, 24688505 - 24688420
Alignment:
Q  159 aaaggaaaatgttacatgaacactctttaaccatacactctattgtacaccc-atgcattaaggacattttggtaaattcatctca 243  Q
    ||||||||||||||||||||||| |||||    ||||||| ||||||||||| ||| |||| ||| |||||||||| |||||||||    
T  24688505 aaaggaaaatgttacatgaacaccctttatttctacactccattgtacaccctatgtattagggatattttggtaagttcatctca 24688420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 164 - 243
Target Start/End: Complemental strand, 53581956 - 53581876
Alignment:
Q  164 aaaatgttacatgaacactctttaaccatacactctattgtaca-cccatgcattaaggacattttggtaaattcatctca 243  Q
    ||||||||||||||||||||||||  ||||||||| |||||||| || ||| |||| ||| |||||| ||| |||||||||    
T  53581956 aaaatgttacatgaacactctttattcatacactccattgtacatcctatgtattagggatattttgataagttcatctca 53581876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 163 - 243
Target Start/End: Complemental strand, 42394518 - 42394437
Alignment:
Q  163 gaaaatgttacatgaacactctttaaccatacactctattgtacaccc-atgcattaaggacattttggtaaattcatctca 243  Q
    ||||||||||||||||||| |||||  | |||| || ||||||||||| ||| |||| ||| |||||||||| |||||||||    
T  42394518 gaaaatgttacatgaacaccctttattcctacattccattgtacaccctatgtattagggatattttggtaagttcatctca 42394437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 158 - 243
Target Start/End: Original strand, 46941049 - 46941135
Alignment:
Q  158 aaaaggaaaatgttacatgaacactctttaaccataca-ctctattgtaca-cccatgcattaaggacattttggtaaattcatctca 243  Q
    |||||||||||||||||||||||| |||||  | |||| ||| |||||||| |||||| |||| ||| |||||||||| |||||||||    
T  46941049 aaaaggaaaatgttacatgaacaccctttattcctacatctc-attgtacaccccatgtattagggatattttggtaagttcatctca 46941135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 160 - 243
Target Start/End: Complemental strand, 47191127 - 47191044
Alignment:
Q  160 aaggaaaatgttacatgaacactctttaaccatacactctattgtacacccatgcattaaggacattttggtaaattcatctca 243  Q
    |||||||||||||||||||||| |||||  | |||||   |||||||||||||| ||||  || |||||| ||| |||||||||    
T  47191127 aaggaaaatgttacatgaacaccctttattcctacacctcattgtacacccatgtattagagatattttgataagttcatctca 47191044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 243
Target Start/End: Original strand, 42100688 - 42100770
Alignment:
Q  162 ggaaaatgttacatgaacactctttaaccatacactctattgtaca-cccatgcattaaggacattttggtaaattcatctca 243  Q
    |||||||||||||||||||| |||||  | |||||   |||||||| |||||| |||| ||| |||||||||| |||||||||    
T  42100688 ggaaaatgttacatgaacaccctttattcctacacctcattgtacaccccatgtattagggatattttggtaagttcatctca 42100770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 243
Target Start/End: Complemental strand, 45127028 - 45126946
Alignment:
Q  162 ggaaaatgttacatgaacactctttaaccatacactctattgtaca-cccatgcattaaggacattttggtaaattcatctca 243  Q
    |||||||||||||| ||||| |||||  ||||||  | |||||||| |||||| |||| ||| |||||||||| |||||||||    
T  45127028 ggaaaatgttacataaacaccctttattcatacatcccattgtacaccccatgtattagggatattttggtaagttcatctca 45126946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 158 - 243
Target Start/End: Complemental strand, 54246252 - 54246166
Alignment:
Q  158 aaaaggaaaatgttacatgaacactctttaaccatacactctattgtacaccc-atgcattaaggacattttggtaaattcatctca 243  Q
    |||||||||||||||||||||||| |||||  | ||||| | ||||||||||| ||| ||||  || ||||| |||| |||||||||    
T  54246252 aaaaggaaaatgttacatgaacaccctttattcctacaccccattgtacaccctatgtattagagatatttttgtaagttcatctca 54246166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 210 - 243
Target Start/End: Original strand, 51249357 - 51249390
Alignment:
Q  210 catgcattaaggacattttggtaaattcatctca 243  Q
    ||||||||||||| ||||||||||||||||||||    
T  51249357 catgcattaaggatattttggtaaattcatctca 51249390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 163 - 243
Target Start/End: Original strand, 54237097 - 54237178
Alignment:
Q  163 gaaaatgttacatgaacactctttaaccatacactctattgtacaccc-atgcattaaggacattttggtaaattcatctca 243  Q
    ||||||||||||||||||| |||||  | ||||  | ||||||||||| ||| |||| ||| |||||||||| |||||||||    
T  54237097 gaaaatgttacatgaacaccctttattcctacatcccattgtacaccctatgtattagggatattttggtaagttcatctca 54237178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 243
Target Start/End: Original strand, 40808863 - 40808947
Alignment:
Q  160 aaggaaaatgttacatgaacactctttaaccatacactctattgtaca-cccatgcattaaggacattttggtaaattcatctca 243  Q
    |||||||||||||||| |||||  ||||  | ||||| | |||||||| |||||| |||| ||| |||||||||| |||||||||    
T  40808863 aaggaaaatgttacatcaacaccatttattcctacaccccattgtacaccccatgtattagggatattttggtaagttcatctca 40808947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 60; Significance: 1e-25; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 161 - 243
Target Start/End: Original strand, 17208073 - 17208156
Alignment:
Q  161 aggaaaatgttacatgaacactctttaaccatacactctattgtacaccc-atgcattaaggacattttggtaaattcatctca 243  Q
    ||||||||||||| ||||||| |||||| |||||||| |||||||||||| |||||||||||||||||||||||||||||||||    
T  17208073 aggaaaatgttacgtgaacaccctttaatcatacactttattgtacaccccatgcattaaggacattttggtaaattcatctca 17208156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 158 - 243
Target Start/End: Complemental strand, 30622822 - 30622737
Alignment:
Q  158 aaaaggaaaatgttacatgaacactctttaaccatacactctattgtacacccatgcattaaggacattttggtaaattcatctca 243  Q
    |||||||||||||||||||||||  |||||| ||||||| ||||||||  ||||||||||||||| ||||||||||||| ||||||    
T  30622822 aaaaggaaaatgttacatgaacatcctttaatcatacaccctattgtaagcccatgcattaaggatattttggtaaatttatctca 30622737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 162 - 243
Target Start/End: Complemental strand, 32473494 - 32473412
Alignment:
Q  162 ggaaaatgttacatgaacactctttaaccatacactctattgtacacc-catgcattaaggacattttggtaaattcatctca 243  Q
    |||||||||||||||||||| |||||| |||||||  ||||||||||| ||||||||| ||| |||||||||| |||||||||    
T  32473494 ggaaaatgttacatgaacaccctttaatcatacaccttattgtacaccacatgcattagggatattttggtaatttcatctca 32473412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 158 - 243
Target Start/End: Original strand, 7617129 - 7617215
Alignment:
Q  158 aaaaggaaaatgttacatgaacactctttaaccatacactctattgtaca-cccatgcattaaggacattttggtaaattcatctca 243  Q
    |||||||||||||||||||||||| |||||  ||||||||| ||| |||| |||||| |||| ||| |||||||||| |||||||||    
T  7617129 aaaaggaaaatgttacatgaacaccctttattcatacactccattatacaccccatgtattagggatattttggtaagttcatctca 7617215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 160 - 239
Target Start/End: Original strand, 38470577 - 38470657
Alignment:
Q  160 aaggaaaatgttacatgaacactctttaaccatacactctattgtaca-cccatgcattaaggacattttggtaaattcat 239  Q
    |||||||||||||||| ||||| |||||  |||||| || |||||||| |||||| |||||||| ||||||||||||||||    
T  38470577 aaggaaaatgttacataaacaccctttattcatacattccattgtacaccccatgtattaaggatattttggtaaattcat 38470657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 162 - 243
Target Start/End: Original strand, 22512305 - 22512387
Alignment:
Q  162 ggaaaatgttacatgaacactctttaaccatacactctattgtacac-ccatgcattaaggacattttggtaaattcatctca 243  Q
    |||||||||||||||||||| |||||  | ||||||| ||||||||| ||||| |||| ||| |||||||||| |||||||||    
T  22512305 ggaaaatgttacatgaacaccctttattcctacactccattgtacactccatgtattagggatattttggtaagttcatctca 22512387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 160 - 243
Target Start/End: Original strand, 18033980 - 18034064
Alignment:
Q  160 aaggaaaatgttacatgaacactctttaaccatacactctattgtacaccc-atgcattaaggacattttggtaaattcatctca 243  Q
    |||||||||||||||||||||| |||||  | ||||||| ||||||||||| ||| |||| ||| ||||| |||| |||||||||    
T  18033980 aaggaaaatgttacatgaacaccctttattcctacactccattgtacaccctatgtattagggatatttttgtaagttcatctca 18034064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 157 - 243
Target Start/End: Complemental strand, 41334768 - 41334681
Alignment:
Q  157 caaaaggaaaatgttacatgaacactctttaaccatacactctattgtacaccc-atgcattaaggacattttggtaaattcatctca 243  Q
    |||| |||||||||||||||||||| |||||  |||||||   ||| ||||||| ||| |||| ||| |||||||||| |||||||||    
T  41334768 caaacggaaaatgttacatgaacaccctttattcatacacctcattatacaccctatgtattagggatattttggtaagttcatctca 41334681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 243
Target Start/End: Complemental strand, 2614749 - 2614667
Alignment:
Q  162 ggaaaatgttacatgaacactctttaaccatacactctattgtacaccc-atgcattaaggacattttggtaaattcatctca 243  Q
    |||||||||||||||||||| |||||  | ||||  | ||||||||||| ||| |||| ||| |||||||||| |||||||||    
T  2614749 ggaaaatgttacatgaacaccctttattcctacatcccattgtacaccctatgtattagggatattttggtaagttcatctca 2614667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 233
Target Start/End: Complemental strand, 33855143 - 33855071
Alignment:
Q  162 ggaaaatgttacatgaacactctttaaccatacactctattgtaca-cccatgcattaaggacattttggtaa 233  Q
    |||||||||||||||||||| |||||  | ||||| | |||||||| |||||| |||| | ||||||||||||    
T  33855143 ggaaaatgttacatgaacaccctttattcctacaccccattgtacaccccatgtattaggaacattttggtaa 33855071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 60; Significance: 1e-25; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 161 - 243
Target Start/End: Original strand, 18491704 - 18491787
Alignment:
Q  161 aggaaaatgttacatgaacactctttaaccatacactctattgtacacc-catgcattaaggacattttggtaaattcatctca 243  Q
    ||||||||||||||||||||| |||||| ||||||| |||||||||||| ||||||||||| ||||||||||||||||||||||    
T  18491704 aggaaaatgttacatgaacaccctttaatcatacaccctattgtacacctcatgcattaagaacattttggtaaattcatctca 18491787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 159 - 243
Target Start/End: Original strand, 43114554 - 43114639
Alignment:
Q  159 aaaggaaaatgttacatgaacactctttaaccatacactctattgtaca-cccatgcattaaggacattttggtaaattcatctca 243  Q
    ||||||||||||||||||||||| |||||| ||||||| |||||||||| ||||||||||| |||||||||||||| |||||||||    
T  43114554 aaaggaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatgcattagggacattttggtaatttcatctca 43114639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 160 - 243
Target Start/End: Complemental strand, 966936 - 966852
Alignment:
Q  160 aaggaaaatgttacatgaacactctttaaccatacactctattgtaca-cccatgcattaaggacattttggtaaattcatctca 243  Q
    |||||||||||||||||||||| |||||| ||||||| |||||||||| ||||||||||||| || |||||||||||||||||||    
T  966936 aaggaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatgcattaagaacgttttggtaaattcatctca 966852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 164 - 243
Target Start/End: Complemental strand, 4299518 - 4299438
Alignment:
Q  164 aaaatgttacatgaacactctttaaccatacactctattgtacac-ccatgcattaaggacattttggtaaattcatctca 243  Q
    ||||||||| |||||||| |||||| ||||||| ||||||||||| ||||||||||| |||||||||||||||||||||||    
T  4299518 aaaatgttatatgaacaccctttaatcatacaccctattgtacactccatgcattaatgacattttggtaaattcatctca 4299438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 164 - 243
Target Start/End: Complemental strand, 6518566 - 6518487
Alignment:
Q  164 aaaatgttacatgaacactctttaaccatacactctattgtacaccc-atgcattaaggacattttggtaaattcatctca 243  Q
    |||||||||||||||||| |||||| ||||||||||||||||||||| |||||||| |||||||||||||| |||||||||    
T  6518566 aaaatgttacatgaacac-ctttaatcatacactctattgtacaccccatgcattagggacattttggtaatttcatctca 6518487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 164 - 243
Target Start/End: Complemental strand, 11825752 - 11825672
Alignment:
Q  164 aaaatgttacatgaacactctttaaccatacactctattgtaca-cccatgcattaaggacattttggtaaattcatctca 243  Q
    |||||||||||||||||| |||||| ||||||| |||||||||| ||||||||||| |||||||||||||| |||||||||    
T  11825752 aaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatgcattagggacattttggtaatttcatctca 11825672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 160 - 243
Target Start/End: Original strand, 16803966 - 16804050
Alignment:
Q  160 aaggaaaatgttacatgaacactctttaaccatacactctattgtaca-cccatgcattaaggacattttggtaaattcatctca 243  Q
    |||||||||||||||||||||| |||||| ||||||| |||||||||| ||||||||||| |||||||||| ||| |||||||||    
T  16803966 aaggaaaatgttacatgaacaccctttaatcatacaccctattgtacatcccatgcattagggacattttgataatttcatctca 16804050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 160 - 243
Target Start/End: Original strand, 16843248 - 16843332
Alignment:
Q  160 aaggaaaatgttacatgaacactctttaaccatacactctattgtaca-cccatgcattaaggacattttggtaaattcatctca 243  Q
    |||||||||||||||||||||| |||||| ||||||| |||||||||| ||||||||||| |||||||||| ||| |||||||||    
T  16843248 aaggaaaatgttacatgaacaccctttaatcatacaccctattgtacatcccatgcattagggacattttgataatttcatctca 16843332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 164 - 243
Target Start/End: Complemental strand, 41282072 - 41281992
Alignment:
Q  164 aaaatgttacatgaacactctttaaccatacactctattgtaca-cccatgcattaaggacattttggtaaattcatctca 243  Q
    |||||||||||||||||| |||||| ||||||| |||||||||| ||||||||||| |||||||||| ||| |||||||||    
T  41282072 aaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatgcattagggacattttgataatttcatctca 41281992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 162 - 243
Target Start/End: Complemental strand, 12415560 - 12415478
Alignment:
Q  162 ggaaaatgttacatgaacactctttaaccatacactctattgtaca-cccatgcattaaggacattttggtaaattcatctca 243  Q
    |||||||||||||||||||| |||||| |||||||  ||||||||| ||||||||||| |||||||||||||| || ||||||    
T  12415560 ggaaaatgttacatgaacaccctttaatcatacaccttattgtacaccccatgcattagggacattttggtaattttatctca 12415478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 162 - 243
Target Start/End: Complemental strand, 12427620 - 12427538
Alignment:
Q  162 ggaaaatgttacatgaacactctttaaccatacactctattgtaca-cccatgcattaaggacattttggtaaattcatctca 243  Q
    |||||||||||||||||||| |||||| |||||||  ||||||||| ||||||||||| |||||||||||||| || ||||||    
T  12427620 ggaaaatgttacatgaacaccctttaatcatacaccttattgtacaccccatgcattagggacattttggtaattttatctca 12427538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 159 - 243
Target Start/End: Complemental strand, 34895844 - 34895759
Alignment:
Q  159 aaaggaaaatgttacatgaacactctttaaccatacactctattgtacaccc-atgcattaaggacattttggtaaattcatctca 243  Q
    |||||||| ||||||||||||||  ||||| || |||| ||||||||||||| |||||||| |||||| |||||||||||||||||    
T  34895844 aaaggaaagtgttacatgaacaccatttaatcacacaccctattgtacaccccatgcattagggacatattggtaaattcatctca 34895759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 161 - 243
Target Start/End: Original strand, 14285675 - 14285758
Alignment:
Q  161 aggaaaatgttacatgaacactctttaaccatacactctattgtacaccc-atgcattaaggacattttggtaaattcatctca 243  Q
    |||||||| |||||  ||||| |||||| ||||||| ||||||||||||| ||  ||||| || ||||||||||||||||||||    
T  14285675 aggaaaatattacacaaacaccctttaatcatacaccctattgtacaccctatatattaaagatattttggtaaattcatctca 14285758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 163 - 243
Target Start/End: Original strand, 19047158 - 19047239
Alignment:
Q  163 gaaaatgttacatgaacactctttaaccatacactctattgtacaccc-atgcattaaggacattttggtaaattcatctca 243  Q
    ||||||||||||||||||| |||||  | |||| || ||||||||||| ||| |||| ||| |||||||||| |||||||||    
T  19047158 gaaaatgttacatgaacaccctttattcctacattccattgtacaccctatgtattagggatattttggtaagttcatctca 19047239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 163 - 243
Target Start/End: Complemental strand, 34817875 - 34817794
Alignment:
Q  163 gaaaatgttacatgaacactctttaaccatacactctattgtacaccc-atgcattaaggacattttggtaaattcatctca 243  Q
    ||||||||||||||||||| |||||  || ||||   ||||||||||| ||||| || | ||||||||||||||||||||||    
T  34817875 gaaaatgttacatgaacaccctttattcacacacctcattgtacaccccatgcactacgcacattttggtaaattcatctca 34817794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 243
Target Start/End: Original strand, 1750414 - 1750496
Alignment:
Q  162 ggaaaatgttacatgaacactctttaaccatacactctattgtacaccc-atgcattaaggacattttggtaaattcatctca 243  Q
    |||||||||||||||||||| |||||  | ||||| | ||||||||||| ||| |||| ||| ||||| |||| |||||||||    
T  1750414 ggaaaatgttacatgaacaccctttattcctacaccccattgtacaccctatgtattagggatatttttgtaagttcatctca 1750496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 158 - 243
Target Start/End: Complemental strand, 4764830 - 4764744
Alignment:
Q  158 aaaaggaaaatgttacatgaacactctttaaccatacactctattgtaca-cccatgcattaaggacattttggtaaattcatctca 243  Q
    |||||||||||||||||| |||||  ||||  | ||||| |||||||||| |||||| ||||   | ||||||||||||||||||||    
T  4764830 aaaaggaaaatgttacatcaacaccatttattcctacaccctattgtacaccccatgtattataaatattttggtaaattcatctca 4764744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 159 - 243
Target Start/End: Complemental strand, 12302356 - 12302271
Alignment:
Q  159 aaaggaaaatgttacatgaacactctttaaccatacactctattgtacaccc-atgcattaaggacattttggtaaattcatctca 243  Q
    ||||||||||||||||||||||| |||||    ||||| | ||||||||||| ||| |||| ||| ||||| |||| |||||||||    
T  12302356 aaaggaaaatgttacatgaacaccctttatttctacaccccattgtacaccctatgtattagggatatttttgtaagttcatctca 12302271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 243
Target Start/End: Complemental strand, 8896681 - 8896601
Alignment:
Q  164 aaaatgttacatgaacactctttaaccatacactctattgtacaccc-atgcattaaggacattttggtaaattcatctca 243  Q
    |||||||||||||||||| |||||  || ||| || ||||||||||| || || || | | ||||||||||||||||||||    
T  8896681 aaaatgttacatgaacaccctttattcacacattccattgtacaccctatacaataggaatattttggtaaattcatctca 8896601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 59; Significance: 4e-25; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 162 - 243
Target Start/End: Original strand, 31513287 - 31513369
Alignment:
Q  162 ggaaaatgttacatgaacactctttaaccatacactctattgtaca-cccatgcattaaggacattttggtaaattcatctca 243  Q
    ||||||||||||||||||||||||||| ||||||| |||||||| | ||||||||||||||| ||||||||||||||||||||    
T  31513287 ggaaaatgttacatgaacactctttaatcatacaccctattgtataccccatgcattaaggatattttggtaaattcatctca 31513369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 163 - 239
Target Start/End: Complemental strand, 31408732 - 31408655
Alignment:
Q  163 gaaaatgttacatgaacactctttaaccatacactctattgtaca-cccatgcattaaggacattttggtaaattcat 239  Q
    ||||||||||||||||||| |||||| |||||||||||||||||| ||||||||||||||| ||||||||||||||||    
T  31408732 gaaaatgttacatgaacaccctttaatcatacactctattgtacatcccatgcattaaggatattttggtaaattcat 31408655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 159 - 243
Target Start/End: Complemental strand, 27535334 - 27535249
Alignment:
Q  159 aaaggaaaatgttacatgaacactctttaaccatacactctattgtacac-ccatgcattaaggacattttggtaaattcatctca 243  Q
    ||||||||||||||||||||||| |||||| ||||||||||||||||||| |||||  |||| ||||||||||||| |||||||||    
T  27535334 aaaggaaaatgttacatgaacaccctttaatcatacactctattgtacactccatgtgttaaagacattttggtaatttcatctca 27535249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 159 - 243
Target Start/End: Original strand, 40236916 - 40237001
Alignment:
Q  159 aaaggaaaatgttacatgaacactctttaaccatacactctattgtaca-cccatgcattaaggacattttggtaaattcatctca 243  Q
    ||||||||||||||||||||||| |||||| ||||||  |||||||||| ||||||||||| |||||||||||||| |||||||||    
T  40236916 aaaggaaaatgttacatgaacaccctttaatcatacatcctattgtacaccccatgcattagggacattttggtaatttcatctca 40237001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 152 - 243
Target Start/End: Original strand, 33384860 - 33384953
Alignment:
Q  152 attttcaaaaggaaaatgttacatgaacactctttaaccatacactc-tattgtacac-ccatgcattaaggacattttggtaaattcatctca 243  Q
    ||||| |||||||||||||||||||||||   ||||| ||||||| | ||||||| || |||||||||| ||||||||||||||||||||||||    
T  33384860 attttgaaaaggaaaatgttacatgaacatcatttaatcatacacccctattgtatactccatgcattagggacattttggtaaattcatctca 33384953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 158 - 243
Target Start/End: Original strand, 5015391 - 5015477
Alignment:
Q  158 aaaaggaaaatgttacatgaacactctttaaccatacactctattgtacacc-catgcattaaggacattttggtaaattcatctca 243  Q
    ||||||||||||||||||||||||||||||    ||||||| |||||||||| |||| |||| ||| |||||||||| |||||||||    
T  5015391 aaaaggaaaatgttacatgaacactctttatttctacactccattgtacacctcatgtattagggatattttggtaagttcatctca 5015477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 161 - 243
Target Start/End: Original strand, 9216301 - 9216383
Alignment:
Q  161 aggaaaatgttacatgaacactctttaaccatacactctattgtacacccatgcattaaggacattttggtaaattcatctca 243  Q
    ||||||||||||||||||||| |||||  | || |  |||||||||||||||||||||  || |||||||||| |||||||||    
T  9216301 aggaaaatgttacatgaacaccctttattcctatatcctattgtacacccatgcattagagatattttggtaagttcatctca 9216383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 161 - 243
Target Start/End: Original strand, 35069720 - 35069803
Alignment:
Q  161 aggaaaatgttacatgaacactctttaaccatacactctattgtacacc-catgcattaaggacattttggtaaattcatctca 243  Q
    |||||||||||||||||||||||||||  | |||||   |||||||||| |||| |||| ||| |||||||||| |||||||||    
T  35069720 aggaaaatgttacatgaacactctttattcctacacctcattgtacacctcatgtattagggatattttggtaagttcatctca 35069803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 164 - 243
Target Start/End: Complemental strand, 4638297 - 4638217
Alignment:
Q  164 aaaatgttacatgaacactctttaaccatacactctattgtaca-cccatgcattaaggacattttggtaaattcatctca 243  Q
    ||||||||||||||||||  ||||  ||||||||| |||||||| |||||  |||| ||| |||||||||| |||||||||    
T  4638297 aaaatgttacatgaacaccttttattcatacactcaattgtacaccccatatattatggatattttggtaagttcatctca 4638217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 164 - 243
Target Start/End: Original strand, 10573751 - 10573831
Alignment:
Q  164 aaaatgttacatgaacactctttaaccatacactctattgtaca-cccatgcattaaggacattttggtaaattcatctca 243  Q
    |||||||||||| ||||| |||||  ||||||  |||||||||| |||||| |||| | | ||||||||||||||||||||    
T  10573751 aaaatgttacataaacaccctttattcatacatcctattgtacaccccatgtattaggaatattttggtaaattcatctca 10573831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 161 - 243
Target Start/End: Complemental strand, 5194332 - 5194249
Alignment:
Q  161 aggaaaatgttacatgaacactctttaaccatacactctattgtacaccc-atgcattaaggacattttggtaaattcatctca 243  Q
    |||||||||||||||||||||  ||||  |||||||   ||||||||||| |||  ||||||| |||||| |||||||||||||    
T  5194332 aggaaaatgttacatgaacaccatttattcatacacctcattgtacaccctatgttttaaggatattttgataaattcatctca 5194249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 161 - 243
Target Start/End: Complemental strand, 24280697 - 24280614
Alignment:
Q  161 aggaaaatgttacatgaacactctttaaccatacactctattgtaca-cccatgcattaaggacattttggtaaattcatctca 243  Q
    ||||||||||||| ||||||| |||||  ||||||| ||||| |||| |||||||| ||   | ||||||||||||||||||||    
T  24280697 aggaaaatgttacgtgaacaccctttattcatacaccctattctacatcccatgcactagaaatattttggtaaattcatctca 24280614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 243
Target Start/End: Complemental strand, 24001112 - 24001030
Alignment:
Q  162 ggaaaatgttacatgaacactctttaaccatacactctattgtacaccc-atgcattaaggacattttggtaaattcatctca 243  Q
    |||||||||||||||||||| |||||  | ||||  | ||||||||||| ||| |||| ||| |||||||||| |||||||||    
T  24001112 ggaaaatgttacatgaacaccctttattcctacatcccattgtacaccctatgtattagggatattttggtaagttcatctca 24001030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 243
Target Start/End: Complemental strand, 42538531 - 42538449
Alignment:
Q  162 ggaaaatgttacatgaacactctttaaccatacactctattgtacaccc-atgcattaaggacattttggtaaattcatctca 243  Q
    |||||||||||||||||||| |||||  | ||||  | ||||||||||| ||| |||| ||| |||||||||| |||||||||    
T  42538531 ggaaaatgttacatgaacaccctttattcctacatcccattgtacaccctatgtattagggatattttggtaagttcatctca 42538449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 243
Target Start/End: Original strand, 42972852 - 42972934
Alignment:
Q  162 ggaaaatgttacatgaacactctttaaccatacactctattgtacacc-catgcattaaggacattttggtaaattcatctca 243  Q
    |||||||||||| ||||||  |||||  | ||||||| |||||||||| |||| |||| ||| |||||||||| |||||||||    
T  42972852 ggaaaatgttacctgaacatcctttattcctacactccattgtacacctcatgtattagggatattttggtaagttcatctca 42972934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 210
Target Start/End: Original strand, 39998408 - 39998456
Alignment:
Q  162 ggaaaatgttacatgaacactctttaaccatacactctattgtacaccc 210  Q
    ||||||||||||||||||||  ||||| ||||||  |||||||||||||    
T  39998408 ggaaaatgttacatgaacacattttaatcatacatcctattgtacaccc 39998456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 59; Significance: 4e-25; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 162 - 243
Target Start/End: Original strand, 48119628 - 48119710
Alignment:
Q  162 ggaaaatgttacatgaacactctttaaccatacactctattgtaca-cccatgcattaaggacattttggtaaattcatctca 243  Q
    |||||||||||||||||||| |||||| ||||||| |||||||||| ||||||||||||||| ||||||||||||||||||||    
T  48119628 ggaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatgcattaaggatattttggtaaattcatctca 48119710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 160 - 243
Target Start/End: Original strand, 44112675 - 44112759
Alignment:
Q  160 aaggaaaatgttacatgaacactctttaaccatacactctattgtaca-cccatgcattaaggacattttggtaaattcatctca 243  Q
    |||||||||||||||||||||| |||||| ||||||| |||||||||| ||||||||||| |||||||||||||| |||||||||    
T  44112675 aaggaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatgcattagggacattttggtaatttcatctca 44112759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 160 - 243
Target Start/End: Complemental strand, 45639834 - 45639750
Alignment:
Q  160 aaggaaaatgttacatgaacactctttaaccatacactctattgtaca-cccatgcattaaggacattttggtaaattcatctca 243  Q
    ||||||||||||||||||||||||||||| ||||||  |||||||||| ||||| ||||||||| ||||||||||||||||||||    
T  45639834 aaggaaaatgttacatgaacactctttaatcatacatcctattgtacaccccatacattaaggatattttggtaaattcatctca 45639750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 161 - 243
Target Start/End: Complemental strand, 38113296 - 38113213
Alignment:
Q  161 aggaaaatgttacatgaacactctttaaccatacactctattgtaca-cccatgcattaaggacattttggtaaattcatctca 243  Q
    |||||||||||| |||||||| |||||| ||||||| |||||||||| |||||||||||| |||||||||||||||||||||||    
T  38113296 aggaaaatgttatatgaacaccctttaatcatacaccctattgtacaccccatgcattaatgacattttggtaaattcatctca 38113213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 162 - 243
Target Start/End: Original strand, 35003294 - 35003376
Alignment:
Q  162 ggaaaatgttacatgaacactctttaaccatacactctattgtaca-cccatgcattaaggacattttggtaaattcatctca 243  Q
    |||||||||||||||||||| |||||| ||||||| |||||||||| ||||| ||||||||| ||||||||||||||||||||    
T  35003294 ggaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatacattaaggatattttggtaaattcatctca 35003376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 162 - 243
Target Start/End: Original strand, 38335918 - 38336000
Alignment:
Q  162 ggaaaatgttacatgaacactctttaaccatacactctattgtaca-cccatgcattaaggacattttggtaaattcatctca 243  Q
    |||||||||||||||||||| |||||| |||||||  ||||||||| ||||||||||||||| ||||||||||||||||||||    
T  38335918 ggaaaatgttacatgaacaccctttaatcatacaccttattgtacatcccatgcattaaggatattttggtaaattcatctca 38336000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 160 - 242
Target Start/End: Original strand, 26585460 - 26585543
Alignment:
Q  160 aaggaaaatgttacatgaacactctttaaccatacactctattgtaca-cccatgcattaaggacattttggtaaattcatctc 242  Q
    ||||||||||||| ||||||| ||||||| |||||||| ||||||||| ||||||||||||||| ||||| |||||||||||||    
T  26585460 aaggaaaatgttagatgaacattctttaatcatacactatattgtacaccccatgcattaaggatattttagtaaattcatctc 26585543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 161 - 243
Target Start/End: Original strand, 45705824 - 45705907
Alignment:
Q  161 aggaaaatgttacatgaacactctttaaccatacactctattgtacac-ccatgcattaaggacattttggtaaattcatctca 243  Q
    |||||||||||| |||||||| |||||| |||||| |||||||||||| |||||||||| |||||||||| |||||||||||||    
T  45705824 aggaaaatgttatatgaacaccctttaatcatacattctattgtacactccatgcattatggacattttgataaattcatctca 45705907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 162 - 243
Target Start/End: Original strand, 46168383 - 46168465
Alignment:
Q  162 ggaaaatgttacatgaacactctttaaccatacactctattgtacaccc-atgcattaaggacattttggtaaattcatctca 243  Q
    |||||||||||||||||||| |||||| |||| |  ||||||||||||| |||||||||||| ||||||||||||||||||||    
T  46168383 ggaaaatgttacatgaacaccctttaatcatatatcctattgtacacccaatgcattaaggatattttggtaaattcatctca 46168465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 161 - 243
Target Start/End: Original strand, 41065152 - 41065235
Alignment:
Q  161 aggaaaatgttacatgaacactctttaaccatacactctattgtaca-cccatgcattaaggacattttggtaaattcatctca 243  Q
    ||||||||||||||||||||| |||||| ||||||| || ||||||| ||||||||||| || ||||||||||| |||||||||    
T  41065152 aggaaaatgttacatgaacaccctttaatcatacaccctgttgtacaccccatgcattaggggcattttggtaatttcatctca 41065235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 161 - 243
Target Start/End: Complemental strand, 45427846 - 45427763
Alignment:
Q  161 aggaaaatgttacatgaacactctttaaccatacactctattgtacac-ccatgcattaaggacattttggtaaattcatctca 243  Q
    |||||||||||||||||| ||  ||||| ||||||| ||||||||||| |||||||||| |||||||||||||| |||||||||    
T  45427846 aggaaaatgttacatgaataccttttaatcatacaccctattgtacactccatgcattagggacattttggtaatttcatctca 45427763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 160 - 243
Target Start/End: Complemental strand, 48499064 - 48498980
Alignment:
Q  160 aaggaaaatgttacatgaacactctttaaccatacactctattgtacacc-catgcattaaggacattttggtaaattcatctca 243  Q
    ||||||||||||||||||||||||||||    ||||||| |||||||||| |||| |||| ||| |||||||||| |||||||||    
T  48499064 aaggaaaatgttacatgaacactctttatttctacactccattgtacacctcatgtattagggatattttggtaagttcatctca 48498980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 160 - 218
Target Start/End: Original strand, 14427345 - 14427404
Alignment:
Q  160 aaggaaaatgttacatgaacactctttaaccatacactctattgtacacc-catgcatta 218  Q
    |||||||||||||||||||||| |||||| ||||||| |||||||||||| |||||||||    
T  14427345 aaggaaaatgttacatgaacaccctttaatcatacaccctattgtacacctcatgcatta 14427404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 162 - 243
Target Start/End: Complemental strand, 35000213 - 35000131
Alignment:
Q  162 ggaaaatgttacatgaacactctttaaccatacactctattgtacac-ccatgcattaaggacattttggtaaattcatctca 243  Q
    ||||||||||||||||||||  ||||| |||||||||||||||| ||  |||| |||| |||||||||| |||||| ||||||    
T  35000213 ggaaaatgttacatgaacaccttttaatcatacactctattgtatacttcatgtattagggacattttgataaatttatctca 35000131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 158 - 243
Target Start/End: Original strand, 5489772 - 5489858
Alignment:
Q  158 aaaaggaaaatgttacatgaacactctttaaccatacactctattgtacaccc-atgcattaaggacattttggtaaattcatctca 243  Q
    |||||||||||||||||||||||| |||||  | ||||  | ||||||||||| ||| |||| ||| |||||||||| |||||||||    
T  5489772 aaaaggaaaatgttacatgaacaccctttattcctacatcccattgtacaccctatgtattagggatattttggtaagttcatctca 5489858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 159 - 243
Target Start/End: Complemental strand, 23989627 - 23989541
Alignment:
Q  159 aaaggaaaatgttacatgaacactc-tttaaccatacactctattgtacaccc-atgcattaaggacattttggtaaattcatctca 243  Q
    ||||||||||||||||||||||| | ||||  ||||||||| |||||| |||| ||| |||| ||| ||||||||||||| ||||||    
T  23989627 aaaggaaaatgttacatgaacacccttttattcatacactcaattgtataccctatgtattagggatattttggtaaatttatctca 23989541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 162 - 239
Target Start/End: Original strand, 37814778 - 37814856
Alignment:
Q  162 ggaaaatgttacatgaacactctttaaccatacactct-attgtacaccc-atgcattaaggacattttggtaaattcat 239  Q
    |||||||||||||| ||||| |||||  |||||| ||| ||||||||||| ||| |||||||| ||||||||||||||||    
T  37814778 ggaaaatgttacataaacaccctttattcataca-tctcattgtacaccccatgtattaaggatattttggtaaattcat 37814856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 243
Target Start/End: Complemental strand, 43571186 - 43571104
Alignment:
Q  162 ggaaaatgttacatgaacactctttaaccatacactctattgtaca-cccatgcattaaggacattttggtaaattcatctca 243  Q
    |||||||||||||||||||| |||||  | |||||   |||||||| |||||| |||| ||| |||||||||| |||||||||    
T  43571186 ggaaaatgttacatgaacaccctttattcctacacctcattgtacaccccatgtattagggatattttggtaagttcatctca 43571104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 243
Target Start/End: Complemental strand, 2497660 - 2497580
Alignment:
Q  164 aaaatgttacatgaacactctttaaccatacactctattgtaca-cccatgcattaaggacattttggtaaattcatctca 243  Q
    |||||||||||| |||||  ||||  |||||| || |||||||| |||||  |||||||| |||||||||| |||||||||    
T  2497660 aaaatgttacataaacaccatttattcatacattccattgtacaccccatatattaaggatattttggtaagttcatctca 2497580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 241
Target Start/End: Complemental strand, 50448360 - 50448280
Alignment:
Q  162 ggaaaatgttacatgaacactctttaaccatacactctattgtacacc-catgcattaaggacattttggtaaattcatct 241  Q
    ||||||||||||||||||||||||||    ||||||| ||||||||||  ||| |||| ||| ||||| |||| |||||||    
T  50448360 ggaaaatgttacatgaacactctttatttctacactccattgtacaccttatgtattagggatatttttgtaagttcatct 50448280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 58; Significance: 2e-24; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 159 - 243
Target Start/End: Original strand, 35181513 - 35181598
Alignment:
Q  159 aaaggaaaatgttacatgaacactctttaaccatacactctattgtaca-cccatgcattaaggacattttggtaaattcatctca 243  Q
    ||||||||||||||||||||||| |||||| ||||||| |||||||||| ||||||||||| |||||||||||||| |||||||||    
T  35181513 aaaggaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatgcattagggacattttggtaatttcatctca 35181598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 160 - 243
Target Start/End: Original strand, 34304786 - 34304870
Alignment:
Q  160 aaggaaaatgttacatgaacactctttaaccatacactctattgtaca-cccatgcattaaggacattttggtaaattcatctca 243  Q
    |||||||||||||||||||||  |||||| ||||||| |||||||||| ||||||||||| |||||||||||||| |||||||||    
T  34304786 aaggaaaatgttacatgaacatcctttaatcatacaccctattgtacaccccatgcattagggacattttggtaatttcatctca 34304870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 161 - 243
Target Start/End: Complemental strand, 16603727 - 16603644
Alignment:
Q  161 aggaaaatgttacatgaacactctttaaccatacactctattgtacaccc-atgcattaaggacattttggtaaattcatctca 243  Q
    |||||||||||||||| |||| |||||| |||||||  |||| ||||||| ||||||||| |||||||||||||||||||||||    
T  16603727 aggaaaatgttacatgcacaccctttaatcatacaccttattatacaccccatgcattaaagacattttggtaaattcatctca 16603644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 161 - 243
Target Start/End: Complemental strand, 18066819 - 18066736
Alignment:
Q  161 aggaaaatgttacatgaacactctttaaccatacactctattgtaca-cccatgcattaaggacattttggtaaattcatctca 243  Q
    ||||||||||||||||||||| |||||| |||||| ||||||||||| |||||| |||| ||| ||||| |||| |||||||||    
T  18066819 aggaaaatgttacatgaacaccctttaatcatacattctattgtacatcccatgtattagggatattttagtaatttcatctca 18066736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 158 - 243
Target Start/End: Complemental strand, 16358938 - 16358851
Alignment:
Q  158 aaaaggaaaatgttacat-gaacactctttaaccatacactctattgtaca-cccatgcattaaggacattttggtaaattcatctca 243  Q
    |||| ||||||||||||| ||| || |||||| ||||||| |||||||||| ||||||||||||| | |||||| |||||||||||||    
T  16358938 aaaaagaaaatgttacattgaagaccctttaatcatacaccctattgtacatcccatgcattaagaatattttgataaattcatctca 16358851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 158 - 243
Target Start/End: Complemental strand, 33630097 - 33630011
Alignment:
Q  158 aaaaggaaaatgttacatgaacactctttaaccatacactctattgtacaccc-atgcattaaggacattttggtaaattcatctca 243  Q
    ||||| ||||||||||| |||||| |||||| |||||||   ||||||||||| |||||||| ||||||||| |||| |||||||||    
T  33630097 aaaagaaaaatgttacacgaacaccctttaatcatacacctcattgtacaccctatgcattagggacattttagtaatttcatctca 33630011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 161 - 243
Target Start/End: Original strand, 2546995 - 2547078
Alignment:
Q  161 aggaaaatgttacatgaacactctttaaccatacactctattgtacacc-catgcattaaggacattttggtaaattcatctca 243  Q
    |||||||||||||||||||||||||||    ||||||| |||||||||| |||| |||| ||| ||||| |||| |||||||||    
T  2546995 aggaaaatgttacatgaacactctttatttctacactccattgtacacctcatgtattagggatattttagtaagttcatctca 2547078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 158 - 243
Target Start/End: Complemental strand, 36743587 - 36743501
Alignment:
Q  158 aaaaggaaaatgttacatgaacactctttaaccatacactctattgtacaccc-atgcattaaggacattttggtaaattcatctca 243  Q
    |||||||||||||||||||||||| |||||  | ||||  | ||||||||||| ||| |||| ||| |||||||||| |||||||||    
T  36743587 aaaaggaaaatgttacatgaacaccctttattcctacatcccattgtacaccctatgtattagggatattttggtaagttcatctca 36743501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 158 - 202
Target Start/End: Complemental strand, 19386674 - 19386630
Alignment:
Q  158 aaaaggaaaatgttacatgaacactctttaaccatacactctatt 202  Q
    |||||||||||||||||||||||| |||||| ||||||| |||||    
T  19386674 aaaaggaaaatgttacatgaacaccctttaatcatacaccctatt 19386630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 164 - 243
Target Start/End: Original strand, 26125637 - 26125717
Alignment:
Q  164 aaaatgttacatgaacactctttaaccatacactctattgtacaccc-atgcattaaggacattttggtaaattcatctca 243  Q
    |||||||||||| ||||| |||||  |||||| || ||||||||||| ||| |||| ||| |||||||||| |||||||||    
T  26125637 aaaatgttacataaacaccctttattcatacattccattgtacaccctatgtattagggatattttggtaagttcatctca 26125717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 243
Target Start/End: Original strand, 11582766 - 11582848
Alignment:
Q  162 ggaaaatgttacatgaacactctttaaccatacactctattgtacaccc-atgcattaaggacattttggtaaattcatctca 243  Q
    |||||||||||||||||||| |||||  | ||||  | ||||||||||| ||| |||| ||| |||||||||| |||||||||    
T  11582766 ggaaaatgttacatgaacaccctttattcctacatcccattgtacaccctatgtattagggatattttggtaagttcatctca 11582848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 158 - 243
Target Start/End: Original strand, 42295191 - 42295277
Alignment:
Q  158 aaaaggaaaatgttacatgaacactctttaaccatacactctattgtacac-ccatgcattaaggacattttggtaaattcatctca 243  Q
    ||||| |||||||||||||||||| |||||  | |||||   ||||||||| ||||| |||| ||| |||||||||| |||||||||    
T  42295191 aaaagaaaaatgttacatgaacaccctttattcctacacctcattgtacactccatgtattagggatattttggtaagttcatctca 42295277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 215 - 243
Target Start/End: Complemental strand, 10678198 - 10678170
Alignment:
Q  215 attaaggacattttggtaaattcatctca 243  Q
    |||||||||||||||||||||||||||||    
T  10678198 attaaggacattttggtaaattcatctca 10678170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 53; Significance: 2e-21; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 160 - 243
Target Start/End: Original strand, 33242401 - 33242485
Alignment:
Q  160 aaggaaaatgttacatgaacactctttaaccatacactctattgtacaccc-atgcattaaggacattttggtaaattcatctca 243  Q
    ||||||||||||||||||||||  ||||| |||||||  |||||||||||| ||| |||||||||||||||||||||||||||||    
T  33242401 aaggaaaatgttacatgaacaccatttaatcatacaccttattgtacaccccatgtattaaggacattttggtaaattcatctca 33242485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 164 - 243
Target Start/End: Original strand, 27441544 - 27441624
Alignment:
Q  164 aaaatgttacatgaacactctttaaccatacactctattgtaca-cccatgcattaaggacattttggtaaattcatctca 243  Q
    |||||||||||||||||| |||||| ||||||| |||||||||| || ||| |||||||| ||||||||||||||||||||    
T  27441544 aaaatgttacatgaacaccctttaatcatacaccctattgtacatcctatgtattaaggatattttggtaaattcatctca 27441624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 162 - 243
Target Start/End: Original strand, 33253913 - 33253995
Alignment:
Q  162 ggaaaatgttacatgaacactctttaaccatacactctattgtaca-cccatgcattaaggacattttggtaaattcatctca 243  Q
    ||||||||||||||||||||  ||||| || |||| |||||||||| ||||||||||| |||||| |||||||||||||||||    
T  33253913 ggaaaatgttacatgaacaccatttaatcacacaccctattgtacaccccatgcattagggacatattggtaaattcatctca 33253995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 150 - 243
Target Start/End: Complemental strand, 26670121 - 26670027
Alignment:
Q  150 taattttcaaaaggaaaatgttacatgaacactctttaaccatacactctattgtacacc-catgcattaaggacattttggtaaattcatctca 243  Q
    ||||||| |||||||||||||||||||||||| |||||  | |||||   |||||||||| |||| |||| ||| |||||||||| |||||||||    
T  26670121 taattttaaaaaggaaaatgttacatgaacaccctttattcctacacctcattgtacacctcatgtattagggatattttggtaagttcatctca 26670027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 159 - 239
Target Start/End: Original strand, 3213397 - 3213478
Alignment:
Q  159 aaaggaaaatgttacatgaacactctttaaccatacactct-attgtacaccc-atgcattaaggacattttggtaaattcat 239  Q
    ||||||||||||||||| ||||| |||||  |||||| ||| ||||||||||| ||| |||||||| ||||||||||||||||    
T  3213397 aaaggaaaatgttacataaacaccctttattcataca-tctcattgtacaccccatgtattaaggatattttggtaaattcat 3213478  T

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Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 159 - 243
Target Start/End: Complemental strand, 7273438 - 7273353
Alignment:
Q  159 aaaggaaaatgttacatgaacactctttaaccatacactctattgtaca-cccatgcattaaggacattttggtaaattcatctca 243  Q
    ||||||||||||||||||||||| |||||  | |||||  ||||||||| |||||| ||||  || |||||||||| |||||||||    
T  7273438 aaaggaaaatgttacatgaacaccctttattcctacaccttattgtacaccccatgtattagagatattttggtaagttcatctca 7273353  T

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Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 164 - 243
Target Start/End: Complemental strand, 24204085 - 24204005
Alignment:
Q  164 aaaatgttacatgaacactctttaaccatacactctattgtacac-ccatgcattaaggacattttggtaaattcatctca 243  Q
    ||||||||||||||||||  ||||  | ||||| ||||||||||| ||||| |||| ||| |||||||||| |||||||||    
T  24204085 aaaatgttacatgaacaccatttattcctacaccctattgtacactccatgtattagggatattttggtaagttcatctca 24204005  T

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Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 161 - 243
Target Start/End: Complemental strand, 9698434 - 9698351
Alignment:
Q  161 aggaaaatgttacatgaacactctttaaccatacactctattgtacaccc-atgcattaaggacattttggtaaattcatctca 243  Q
    ||||||||||||||||||||| |||||  | ||||  | ||||||||||| ||| |||| ||| |||||||||| |||||||||    
T  9698434 aggaaaatgttacatgaacaccctttattcctacatcccattgtacaccctatgtattagggatattttggtaagttcatctca 9698351  T

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Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 161 - 243
Target Start/End: Original strand, 21279928 - 21280011
Alignment:
Q  161 aggaaaatgttacatgaacactctttaaccatacactctattgtaca-cccatgcattaaggacattttggtaaattcatctca 243  Q
    ||||||||||||||||||||| |||||    |||| || |||| ||| |||||| |||| ||| ||||||||||||||||||||    
T  21279928 aggaaaatgttacatgaacaccctttatttctacattccattgcacatcccatgtattagggatattttggtaaattcatctca 21280011  T

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Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 161 - 239
Target Start/End: Complemental strand, 21293778 - 21293699
Alignment:
Q  161 aggaaaatgttacatgaacactctttaaccatacactctattgtacaccc-atgcattaaggacattttggtaaattcat 239  Q
    ||||||||||||||| ||||| |||||  |||||| |  | ||||||||| ||| |||||||| ||||||||||||||||    
T  21293778 aggaaaatgttacataaacaccctttattcatacatttcactgtacaccccatgtattaaggatattttggtaaattcat 21293699  T

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Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 157 - 243
Target Start/End: Original strand, 26466794 - 26466881
Alignment:
Q  157 caaaaggaaaatgttacatgaacactctttaaccatacactctattgtacac-ccatgcattaaggacattttggtaaattcatctca 243  Q
    ||||||||||||||||||| ||||| |||||  | ||||| | ||||||||| ||||| |||| ||  |||||||||| |||||||||    
T  26466794 caaaaggaaaatgttacataaacaccctttattcctacaccccattgtacactccatgtattagggttattttggtaagttcatctca 26466881  T

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Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 243
Target Start/End: Complemental strand, 13743321 - 13743239
Alignment:
Q  162 ggaaaatgttacatgaacactctttaaccatacactctattgtaca-cccatgcattaaggacattttggtaaattcatctca 243  Q
    ||||||||||||||||||||  ||||  ||||||  | |||||||| |||||| |||| ||| |||||||||| |||||||||    
T  13743321 ggaaaatgttacatgaacaccttttattcatacatccaattgtacaccccatgtattagggatattttggtaagttcatctca 13743239  T

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Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 243
Target Start/End: Complemental strand, 13748821 - 13748739
Alignment:
Q  162 ggaaaatgttacatgaacactctttaaccatacactctattgtaca-cccatgcattaaggacattttggtaaattcatctca 243  Q
    ||||||||||||||||||||  ||||  ||||||  | |||||||| |||||| |||| ||| |||||||||| |||||||||    
T  13748821 ggaaaatgttacatgaacaccttttattcatacatccaattgtacaccccatgtattagggatattttggtaagttcatctca 13748739  T

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Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 238
Target Start/End: Complemental strand, 31109323 - 31109245
Alignment:
Q  161 aggaaaatgttacatgaacactctttaaccatacactctattgtaca-cccatgcattaaggacattttggtaaattca 238  Q
    ||||||||||||||||||||| |||||| ||||||  | ||| |||| |||||||| || ||| |||||| ||||||||    
T  31109323 aggaaaatgttacatgaacaccctttaatcatacatcccattatacaccccatgcactagggatattttgataaattca 31109245  T

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Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 243
Target Start/End: Original strand, 30735984 - 30736064
Alignment:
Q  164 aaaatgttacatgaacactctttaaccatacactctattgtacacc-catgcattaaggacattttggtaaattcatctca 243  Q
    ||||||||||||||||||| ||||  | ||||| | |||||||||| |||| ||||  || |||||||||| |||||||||    
T  30735984 aaaatgttacatgaacactttttattcctacaccccattgtacacctcatgtattagtgatattttggtaagttcatctca 30736064  T

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Target: scaffold0003 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 164 - 243
Target Start/End: Complemental strand, 45817 - 45737
Alignment:
Q  164 aaaatgttacatgaacactctttaaccatacactctattgtaca-cccatgcattaaggacattttggtaaattcatctca 243  Q
    |||||||||||||||||| |||||| ||||||| |||||||||| || ||| |||||||| ||||||||||||||||||||    
T  45817 aaaatgttacatgaacaccctttaatcatacaccctattgtacatcctatgtattaaggatattttggtaaattcatctca 45737  T

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Target: scaffold0100 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0100
Description:

Target: scaffold0100; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 162 - 243
Target Start/End: Complemental strand, 35556 - 35474
Alignment:
Q  162 ggaaaatgttacatgaacactctttaaccatacactctattgtacaccc-atgcattaaggacattttggtaaattcatctca 243  Q
    |||||||||||||| |||||  ||||| |||||||  |||||||||||| |||||||| |||||| |||||||||||||||||    
T  35556 ggaaaatgttacataaacaccatttaatcatacaccatattgtacaccccatgcattagggacatattggtaaattcatctca 35474  T

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Target: scaffold0119 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 150 - 243
Target Start/End: Original strand, 673 - 767
Alignment:
Q  150 taattttcaaaaggaaaatgttacatgaacactctttaaccatacactctattgtacacc-catgcattaaggacattttggtaaattcatctca 243  Q
    ||||||| |||||||||||||||||||||||| |||||  | |||||   |||||||||| |||| |||| ||| |||||||||| |||||||||    
T  673 taattttaaaaaggaaaatgttacatgaacaccctttattcctacacctcattgtacacctcatgtattagggatattttggtaagttcatctca 767  T

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Target: scaffold0038 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 163 - 243
Target Start/End: Original strand, 112656 - 112737
Alignment:
Q  163 gaaaatgttacatgaacactctttaaccatacactctattgtacaccc-atgcattaaggacattttggtaaattcatctca 243  Q
    ||||||||||||||||||| |||||  | |||| || ||||||||||| ||| |||| ||| |||||||||| |||||||||    
T  112656 gaaaatgttacatgaacaccctttattcctacattccattgtacaccctatgtattagggatattttggtaagttcatctca 112737  T

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Target: scaffold0385 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0385
Description:

Target: scaffold0385; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 160 - 243
Target Start/End: Original strand, 11249 - 11333
Alignment:
Q  160 aaggaaaatgttacatgaacactctttaaccatacactctattgtaca-cccatgcattaaggacattttggtaaattcatctca 243  Q
    ||||||||||| |||||||||| |||||  ||||||| | |||||||| |||||  |||| ||| |||||||||| |||||||||    
T  11249 aaggaaaatgtcacatgaacacactttattcatacaccccattgtacaccccatatattagggatattttggtaagttcatctca 11333  T

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Target: scaffold0157 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0157
Description:

Target: scaffold0157; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 241
Target Start/End: Complemental strand, 23521 - 23441
Alignment:
Q  162 ggaaaatgttacatgaacactctttaaccatacactctattgtaca-cccatgcattaaggacattttggtaaattcatct 241  Q
    ||||||||||| |||||||| |||||  | ||||||| |||||||| |||||| ||||  || |||||||||| |||||||    
T  23521 ggaaaatgttatatgaacaccctttattcctacactccattgtacatcccatgtattagagatattttggtaagttcatct 23441  T

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